data_8H6I # _model_server_result.job_id amL9Ksa7LTeuH977BMfZbQ _model_server_result.datetime_utc '2024-10-15 16:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8H6I # _exptl.entry_id 8H6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.93 _cell.angle_gamma 90 _cell.entry_id 8H6I _cell.length_a 115.038 _cell.length_b 53.703 _cell.length_c 44.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id ODN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ODN _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.754 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H30 O6' _chem_comp.formula_weight 366.449 _chem_comp.id ODN _chem_comp.mon_nstd_flag . _chem_comp.name (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 ODN sing 237 n n C13 C12 ODN sing 238 n n C13 C17 ODN sing 239 n n O2 C11 ODN sing 240 n n C12 C11 ODN sing 241 n n C12 C15 ODN sing 242 n n C11 C10 ODN sing 243 n n C15 C16 ODN sing 244 n n C17 O3 ODN doub 245 n n C17 C10 ODN sing 246 n n O4 C18 ODN sing 247 n n C10 C18 ODN sing 248 n n C10 C9 ODN sing 249 n n C16 C9 ODN sing 250 n n C18 O1 ODN sing 251 n n C18 C19 ODN sing 252 n n O1 C8 ODN sing 253 n n C9 C7 ODN sing 254 n n O5 C19 ODN sing 255 n n C8 C7 ODN sing 256 n n C19 C6 ODN sing 257 n n C7 C6 ODN sing 258 n n C7 C ODN sing 259 n n C6 C3 ODN sing 260 n n O C ODN sing 261 n n C C1 ODN sing 262 n n C3 C4 ODN sing 263 n n C3 C5 ODN sing 264 n n C3 C2 ODN sing 265 n n C1 C2 ODN sing 266 n n O4 H1 ODN sing 267 n n C8 H2 ODN sing 268 n n C8 H3 ODN sing 269 n n C19 H4 ODN sing 270 n n O5 H5 ODN sing 271 n n C6 H6 ODN sing 272 n n C5 H7 ODN sing 273 n n C5 H8 ODN sing 274 n n C5 H9 ODN sing 275 n n C4 H10 ODN sing 276 n n C4 H11 ODN sing 277 n n C4 H12 ODN sing 278 n n C2 H13 ODN sing 279 n n C2 H14 ODN sing 280 n n C1 H15 ODN sing 281 n n C1 H16 ODN sing 282 n n C13 H17 ODN sing 283 n n C14 H18 ODN sing 284 n n C14 H19 ODN sing 285 n n C14 H20 ODN sing 286 n n C12 H21 ODN sing 287 n n C11 H22 ODN sing 288 n n O2 H23 ODN sing 289 n n C15 H24 ODN sing 290 n n C15 H25 ODN sing 291 n n C16 H26 ODN sing 292 n n C16 H27 ODN sing 293 n n C9 H28 ODN sing 294 n n C H29 ODN sing 295 n n O H30 ODN sing 296 n n # _atom_sites.entry_id 8H6I _atom_sites.fract_transf_matrix[1][1] 0.008693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001996 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ODN A 1 401 401 ODN ODN . C 3 HOH A 1 501 58 HOH HOH . C 3 HOH A 2 502 34 HOH HOH . C 3 HOH A 3 503 128 HOH HOH . C 3 HOH A 4 504 127 HOH HOH . C 3 HOH A 5 505 8 HOH HOH . C 3 HOH A 6 506 106 HOH HOH . C 3 HOH A 7 507 33 HOH HOH . C 3 HOH A 8 508 17 HOH HOH . C 3 HOH A 9 509 91 HOH HOH . C 3 HOH A 10 510 36 HOH HOH . C 3 HOH A 11 511 116 HOH HOH . C 3 HOH A 12 512 6 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 133 HOH HOH . C 3 HOH A 15 515 30 HOH HOH . C 3 HOH A 16 516 80 HOH HOH . C 3 HOH A 17 517 94 HOH HOH . C 3 HOH A 18 518 47 HOH HOH . C 3 HOH A 19 519 62 HOH HOH . C 3 HOH A 20 520 18 HOH HOH . C 3 HOH A 21 521 25 HOH HOH . C 3 HOH A 22 522 13 HOH HOH . C 3 HOH A 23 523 43 HOH HOH . C 3 HOH A 24 524 105 HOH HOH . C 3 HOH A 25 525 86 HOH HOH . C 3 HOH A 26 526 32 HOH HOH . C 3 HOH A 27 527 5 HOH HOH . C 3 HOH A 28 528 24 HOH HOH . C 3 HOH A 29 529 95 HOH HOH . C 3 HOH A 30 530 23 HOH HOH . C 3 HOH A 31 531 72 HOH HOH . C 3 HOH A 32 532 45 HOH HOH . C 3 HOH A 33 533 12 HOH HOH . C 3 HOH A 34 534 28 HOH HOH . C 3 HOH A 35 535 121 HOH HOH . C 3 HOH A 36 536 4 HOH HOH . C 3 HOH A 37 537 123 HOH HOH . C 3 HOH A 38 538 78 HOH HOH . C 3 HOH A 39 539 41 HOH HOH . C 3 HOH A 40 540 27 HOH HOH . C 3 HOH A 41 541 20 HOH HOH . C 3 HOH A 42 542 22 HOH HOH . C 3 HOH A 43 543 2 HOH HOH . C 3 HOH A 44 544 15 HOH HOH . C 3 HOH A 45 545 63 HOH HOH . C 3 HOH A 46 546 10 HOH HOH . C 3 HOH A 47 547 117 HOH HOH . C 3 HOH A 48 548 51 HOH HOH . C 3 HOH A 49 549 118 HOH HOH . C 3 HOH A 50 550 40 HOH HOH . C 3 HOH A 51 551 14 HOH HOH . C 3 HOH A 52 552 134 HOH HOH . C 3 HOH A 53 553 135 HOH HOH . C 3 HOH A 54 554 74 HOH HOH . C 3 HOH A 55 555 48 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 87 HOH HOH . C 3 HOH A 58 558 103 HOH HOH . C 3 HOH A 59 559 9 HOH HOH . C 3 HOH A 60 560 11 HOH HOH . C 3 HOH A 61 561 76 HOH HOH . C 3 HOH A 62 562 139 HOH HOH . C 3 HOH A 63 563 16 HOH HOH . C 3 HOH A 64 564 73 HOH HOH . C 3 HOH A 65 565 19 HOH HOH . C 3 HOH A 66 566 108 HOH HOH . C 3 HOH A 67 567 64 HOH HOH . C 3 HOH A 68 568 92 HOH HOH . C 3 HOH A 69 569 113 HOH HOH . C 3 HOH A 70 570 52 HOH HOH . C 3 HOH A 71 571 75 HOH HOH . C 3 HOH A 72 572 44 HOH HOH . C 3 HOH A 73 573 69 HOH HOH . C 3 HOH A 74 574 49 HOH HOH . C 3 HOH A 75 575 1 HOH HOH . C 3 HOH A 76 576 56 HOH HOH . C 3 HOH A 77 577 38 HOH HOH . C 3 HOH A 78 578 101 HOH HOH . C 3 HOH A 79 579 29 HOH HOH . C 3 HOH A 80 580 79 HOH HOH . C 3 HOH A 81 581 98 HOH HOH . C 3 HOH A 82 582 146 HOH HOH . C 3 HOH A 83 583 129 HOH HOH . C 3 HOH A 84 584 102 HOH HOH . C 3 HOH A 85 585 115 HOH HOH . C 3 HOH A 86 586 143 HOH HOH . C 3 HOH A 87 587 39 HOH HOH . C 3 HOH A 88 588 93 HOH HOH . C 3 HOH A 89 589 85 HOH HOH . C 3 HOH A 90 590 54 HOH HOH . C 3 HOH A 91 591 83 HOH HOH . C 3 HOH A 92 592 42 HOH HOH . C 3 HOH A 93 593 60 HOH HOH . C 3 HOH A 94 594 46 HOH HOH . C 3 HOH A 95 595 84 HOH HOH . C 3 HOH A 96 596 3 HOH HOH . C 3 HOH A 97 597 107 HOH HOH . C 3 HOH A 98 598 122 HOH HOH . C 3 HOH A 99 599 31 HOH HOH . C 3 HOH A 100 600 137 HOH HOH . C 3 HOH A 101 601 130 HOH HOH . C 3 HOH A 102 602 68 HOH HOH . C 3 HOH A 103 603 59 HOH HOH . C 3 HOH A 104 604 65 HOH HOH . C 3 HOH A 105 605 109 HOH HOH . C 3 HOH A 106 606 90 HOH HOH . C 3 HOH A 107 607 89 HOH HOH . C 3 HOH A 108 608 35 HOH HOH . C 3 HOH A 109 609 71 HOH HOH . C 3 HOH A 110 610 114 HOH HOH . C 3 HOH A 111 611 70 HOH HOH . C 3 HOH A 112 612 125 HOH HOH . C 3 HOH A 113 613 97 HOH HOH . C 3 HOH A 114 614 67 HOH HOH . C 3 HOH A 115 615 141 HOH HOH . C 3 HOH A 116 616 120 HOH HOH . C 3 HOH A 117 617 88 HOH HOH . C 3 HOH A 118 618 55 HOH HOH . C 3 HOH A 119 619 81 HOH HOH . C 3 HOH A 120 620 61 HOH HOH . C 3 HOH A 121 621 66 HOH HOH . C 3 HOH A 122 622 50 HOH HOH . C 3 HOH A 123 623 53 HOH HOH . C 3 HOH A 124 624 142 HOH HOH . C 3 HOH A 125 625 111 HOH HOH . C 3 HOH A 126 626 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 ODN . . . B 2 6.788 -0.827 21.064 1 71.46 ? O3 ODN 401 A 1 HETATM 2 C C17 ODN . . . B 2 7.946 -0.653 21.344 1 70.84 ? C17 ODN 401 A 1 HETATM 3 C C10 ODN . . . B 2 8.478 0.057 22.584 1 70.49 ? C10 ODN 401 A 1 HETATM 4 C C18 ODN . . . B 2 7.719 1.329 23.041 1 70.27 ? C18 ODN 401 A 1 HETATM 5 O O4 ODN . . . B 2 7.649 2.325 22.085 1 69.24 ? O4 ODN 401 A 1 HETATM 6 O O1 ODN . . . B 2 8.453 1.863 24.158 1 69.88 ? O1 ODN 401 A 1 HETATM 7 C C8 ODN . . . B 2 8.659 0.912 25.23 1 70.12 ? C8 ODN 401 A 1 HETATM 8 C C19 ODN . . . B 2 6.314 1.072 23.594 1 70.82 ? C19 ODN 401 A 1 HETATM 9 O O5 ODN . . . B 2 5.35 0.782 22.582 1 70.07 ? O5 ODN 401 A 1 HETATM 10 C C6 ODN . . . B 2 6.357 0.016 24.711 1 71.16 ? C6 ODN 401 A 1 HETATM 11 C C3 ODN . . . B 2 5.444 0.385 25.922 1 71.14 ? C3 ODN 401 A 1 HETATM 12 C C5 ODN . . . B 2 3.982 0.436 25.444 1 71.11 ? C5 ODN 401 A 1 HETATM 13 C C4 ODN . . . B 2 5.801 1.75 26.535 1 70.27 ? C4 ODN 401 A 1 HETATM 14 C C2 ODN . . . B 2 5.592 -0.703 26.985 1 71.51 ? C2 ODN 401 A 1 HETATM 15 C C1 ODN . . . B 2 7.035 -0.936 27.392 1 71.43 ? C1 ODN 401 A 1 HETATM 16 C C13 ODN . . . B 2 9.125 -1.212 20.558 1 70 ? C13 ODN 401 A 1 HETATM 17 C C14 ODN . . . B 2 8.909 -2.64 20.099 1 70.13 ? C14 ODN 401 A 1 HETATM 18 C C12 ODN . . . B 2 10.304 -1.014 21.504 1 70.22 ? C12 ODN 401 A 1 HETATM 19 C C11 ODN . . . B 2 9.954 0.308 22.183 1 70.37 ? C11 ODN 401 A 1 HETATM 20 O O2 ODN . . . B 2 10.141 1.393 21.293 1 69.61 ? O2 ODN 401 A 1 HETATM 21 C C15 ODN . . . B 2 10.418 -2.107 22.561 1 70.54 ? C15 ODN 401 A 1 HETATM 22 C C16 ODN . . . B 2 9.766 -1.717 23.882 1 70.47 ? C16 ODN 401 A 1 HETATM 23 C C9 ODN . . . B 2 8.41 -1.036 23.724 1 70.82 ? C9 ODN 401 A 1 HETATM 24 C C7 ODN . . . B 2 7.845 -0.373 25.019 1 70.9 ? C7 ODN 401 A 1 HETATM 25 C C ODN . . . B 2 7.911 -1.339 26.222 1 70.9 ? C ODN 401 A 1 HETATM 26 O O ODN . . . B 2 9.252 -1.49 26.712 1 70.73 ? O ODN 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #