data_8H75 # _model_server_result.job_id CyIRNuN8jQ74BOQ5yBLrpQ _model_server_result.datetime_utc '2025-07-05 02:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 8H75 # _exptl.entry_id 8H75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.857 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tinengotinib _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 8H75 _cell.length_a 43.022 _cell.length_b 198.595 _cell.length_c 67.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 199 A ASP 655 1_555 A N PTR 200 A PTR 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 200 A PTR 656 1_555 A N TYR 201 A TYR 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ASP 199 B ASP 655 1_555 B N PTR 200 B PTR 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C PTR 200 B PTR 656 1_555 B N TYR 201 B TYR 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C20 H19 Cl N6 O' _chem_comp.formula_weight 394.857 _chem_comp.id KX0 _chem_comp.mon_nstd_flag . _chem_comp.name Tinengotinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-[9-(2-chlorophenyl)-6-methyl-2,4,5,8,12-pentazatricyclo[8.4.0.0^{3,7}]tetradeca-1(10),3,6,8,11,13-hexaen-13-yl]morpholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C10 KX0 sing 173 n y C09 C08 KX0 doub 174 n y C10 C11 KX0 doub 175 n y C08 C07 KX0 sing 176 n y C11 CL1 KX0 sing 177 n n C11 C06 KX0 sing 178 n y C07 C06 KX0 doub 179 n y C06 C05 KX0 sing 180 n n C22 N21 KX0 doub 181 n y C22 C13 KX0 sing 182 n y N21 C20 KX0 sing 183 n y O26 C27 KX0 sing 184 n n O26 C25 KX0 sing 185 n n C28 C27 KX0 sing 186 n n C28 N23 KX0 sing 187 n n C05 C13 KX0 sing 188 n n C05 N04 KX0 doub 189 n n C24 C25 KX0 sing 190 n n C24 N23 KX0 sing 191 n n C13 C14 KX0 doub 192 n y C20 N23 KX0 sing 193 n n C20 C19 KX0 doub 194 n y N04 C03 KX0 sing 195 n n C14 C19 KX0 sing 196 n y C14 N15 KX0 sing 197 n n C03 C02 KX0 doub 198 n y C03 C16 KX0 sing 199 n y C01 C02 KX0 sing 200 n n N15 C16 KX0 sing 201 n n C02 N18 KX0 sing 202 n y C16 N17 KX0 doub 203 n y N18 N17 KX0 sing 204 n y C10 H1 KX0 sing 205 n n C22 H2 KX0 sing 206 n n C24 H3 KX0 sing 207 n n C24 H4 KX0 sing 208 n n C28 H5 KX0 sing 209 n n C28 H6 KX0 sing 210 n n C01 H7 KX0 sing 211 n n C01 H8 KX0 sing 212 n n C01 H9 KX0 sing 213 n n C07 H11 KX0 sing 214 n n C08 H12 KX0 sing 215 n n C09 H13 KX0 sing 216 n n C19 H14 KX0 sing 217 n n C25 H15 KX0 sing 218 n n C25 H16 KX0 sing 219 n n C27 H17 KX0 sing 220 n n C27 H18 KX0 sing 221 n n N15 H20 KX0 sing 222 n n N18 H10 KX0 sing 223 n n # _atom_sites.entry_id 8H75 _atom_sites.fract_transf_matrix[1][1] 0.023244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KX0 A 1 1001 1001 KX0 LIG . F 3 CL A 1 1002 1 CL CL . G 2 KX0 B 1 1001 1001 KX0 LIG . H 2 KX0 C 1 1001 1001 KX0 LIG . I 2 KX0 D 1 1001 1001 KX0 LIG . J 4 HOH A 1 1101 7 HOH HOH . J 4 HOH A 2 1102 38 HOH HOH . J 4 HOH A 3 1103 36 HOH HOH . J 4 HOH A 4 1104 5 HOH HOH . K 4 HOH B 1 1101 34 HOH HOH . K 4 HOH B 2 1102 8 HOH HOH . K 4 HOH B 3 1103 42 HOH HOH . K 4 HOH B 4 1104 35 HOH HOH . K 4 HOH B 5 1105 14 HOH HOH . K 4 HOH B 6 1106 17 HOH HOH . L 4 HOH C 1 1101 23 HOH HOH . L 4 HOH C 2 1102 4 HOH HOH . L 4 HOH C 3 1103 46 HOH HOH . L 4 HOH C 4 1104 48 HOH HOH . L 4 HOH C 5 1105 43 HOH HOH . L 4 HOH C 6 1106 22 HOH HOH . M 4 HOH D 1 1101 40 HOH HOH . M 4 HOH D 2 1102 49 HOH HOH . M 4 HOH D 3 1103 27 HOH HOH . M 4 HOH D 4 1104 2 HOH HOH . M 4 HOH D 5 1105 1 HOH HOH . M 4 HOH D 6 1106 21 HOH HOH . M 4 HOH D 7 1107 25 HOH HOH . M 4 HOH D 8 1108 31 HOH HOH . M 4 HOH D 9 1109 15 HOH HOH . M 4 HOH D 10 1110 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KX0 . . . E 2 -2.029 -5.741 24.061 1 64.18 ? C10 KX0 1001 A 1 HETATM 2 C C13 KX0 . . . E 2 -4.483 -8.792 27.089 1 61.22 ? C13 KX0 1001 A 1 HETATM 3 C C20 KX0 . . . E 2 -6.945 -9.969 27.313 1 61.3 ? C20 KX0 1001 A 1 HETATM 4 C C22 KX0 . . . E 2 -5.355 -8.966 25.996 1 65.06 ? C22 KX0 1001 A 1 HETATM 5 C C24 KX0 . . . E 2 -8.341 -11.98 26.99 1 59.26 ? C24 KX0 1001 A 1 HETATM 6 C C28 KX0 . . . E 2 -9.331 -9.89 26.704 1 60.03 ? C28 KX0 1001 A 1 HETATM 7 C C01 KX0 . . . E 2 0.868 -8.124 29.041 1 61.04 ? C01 KX0 1001 A 1 HETATM 8 C C02 KX0 . . . E 2 -0.491 -8.443 29.64 1 47.27 ? C02 KX0 1001 A 1 HETATM 9 C C03 KX0 . . . E 2 -1.684 -8.589 28.928 1 45.69 ? C03 KX0 1001 A 1 HETATM 10 C C05 KX0 . . . E 2 -3.139 -8.121 26.796 1 58.45 ? C05 KX0 1001 A 1 HETATM 11 C C06 KX0 . . . E 2 -3.135 -7.041 25.728 1 58.44 ? C06 KX0 1001 A 1 HETATM 12 C C07 KX0 . . . E 2 -4.309 -6.362 25.47 1 54.73 ? C07 KX0 1001 A 1 HETATM 13 C C08 KX0 . . . E 2 -4.352 -5.372 24.509 1 52.17 ? C08 KX0 1001 A 1 HETATM 14 C C09 KX0 . . . E 2 -3.206 -5.061 23.802 1 60.32 ? C09 KX0 1001 A 1 HETATM 15 C C11 KX0 . . . E 2 -1.993 -6.732 25.022 1 63.29 ? C11 KX0 1001 A 1 HETATM 16 C C14 KX0 . . . E 2 -4.871 -9.234 28.328 1 58.04 ? C14 KX0 1001 A 1 HETATM 17 C C16 KX0 . . . E 2 -2.651 -8.874 29.846 1 45.24 ? C16 KX0 1001 A 1 HETATM 18 C C19 KX0 . . . E 2 -6.152 -9.837 28.439 1 59.29 ? C19 KX0 1001 A 1 HETATM 19 C C25 KX0 . . . E 2 -9.725 -12.567 27.229 1 70.55 ? C25 KX0 1001 A 1 HETATM 20 C C27 KX0 . . . E 2 -10.693 -10.512 26.975 1 69.61 ? C27 KX0 1001 A 1 HETATM 21 N N04 KX0 . . . E 2 -1.941 -8.479 27.498 1 54.16 ? N04 KX0 1001 A 1 HETATM 22 N N15 KX0 . . . E 2 -4.077 -9.115 29.571 1 52.26 ? N15 KX0 1001 A 1 HETATM 23 N N17 KX0 . . . E 2 -2.079 -8.899 31.081 1 42.23 ? N17 KX0 1001 A 1 HETATM 24 N N18 KX0 . . . E 2 -0.748 -8.629 30.916 1 39.71 ? N18 KX0 1001 A 1 HETATM 25 N N21 KX0 . . . E 2 -6.538 -9.535 26.136 1 65.87 ? N21 KX0 1001 A 1 HETATM 26 N N23 KX0 . . . E 2 -8.241 -10.58 27.382 1 57.73 ? N23 KX0 1001 A 1 HETATM 27 O O26 KX0 . . . E 2 -10.724 -11.841 26.61 1 76.3 ? O26 KX0 1001 A 1 HETATM 28 CL CL1 KX0 . . . E 2 -0.467 -7.588 25.328 1 69.04 ? CL1 KX0 1001 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #