data_8H79 # _model_server_result.job_id ncdVHv0kbDk_0-5T9Lmu1g _model_server_result.datetime_utc '2025-10-01 05:54:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8H79 # _exptl.entry_id 8H79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8H79 _cell.length_a 63.15 _cell.length_b 63.15 _cell.length_c 117.76 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.575 54.689504 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.575 54.689504 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 222 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 215 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.431 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag ? _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 324 n n O1 HO1 PG4 sing 325 n n C1 C2 PG4 sing 326 n n C1 H11 PG4 sing 327 n n C1 H12 PG4 sing 328 n n C2 O2 PG4 sing 329 n n C2 H21 PG4 sing 330 n n C2 H22 PG4 sing 331 n n O2 C3 PG4 sing 332 n n C3 C4 PG4 sing 333 n n C3 H31 PG4 sing 334 n n C3 H32 PG4 sing 335 n n C4 O3 PG4 sing 336 n n C4 H41 PG4 sing 337 n n C4 H42 PG4 sing 338 n n O3 C5 PG4 sing 339 n n C5 C6 PG4 sing 340 n n C5 H51 PG4 sing 341 n n C5 H52 PG4 sing 342 n n C6 O4 PG4 sing 343 n n C6 H61 PG4 sing 344 n n C6 H62 PG4 sing 345 n n O4 C7 PG4 sing 346 n n C7 C8 PG4 sing 347 n n C7 H71 PG4 sing 348 n n C7 H72 PG4 sing 349 n n C8 O5 PG4 sing 350 n n C8 H81 PG4 sing 351 n n C8 H82 PG4 sing 352 n n O5 HO5 PG4 sing 353 n n # _atom_sites.entry_id 8H79 _atom_sites.fract_transf_matrix[1][1] 0.015835 _atom_sites.fract_transf_matrix[1][2] 0.009143 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET ? C 3 PG4 A 1 302 601 PG4 PG4 ? D 4 HEX A 1 303 1 HEX HEX ? E 4 HEX A 1 304 3 HEX HEX ? F 4 HEX A 1 305 4 HEX HEX ? G 5 OCT A 1 306 1 OCT OCT ? H 5 OCT A 1 307 2 OCT OCT ? I 5 OCT A 1 308 3 OCT OCT ? J 6 C14 A 1 309 1 C14 C14 ? K 6 C14 A 1 310 2 C14 C14 ? L 7 R16 A 1 311 1 R16 R16 ? M 8 SO4 A 1 312 1 SO4 SO4 ? N 9 CL A 1 313 1 CL CL ? O 10 HOH A 1 401 524 HOH HOH ? O 10 HOH A 2 402 402 HOH HOH ? O 10 HOH A 3 403 417 HOH HOH ? O 10 HOH A 4 404 518 HOH HOH ? O 10 HOH A 5 405 428 HOH HOH ? O 10 HOH A 6 406 403 HOH HOH ? O 10 HOH A 7 407 525 HOH HOH ? O 10 HOH A 8 408 401 HOH HOH ? O 10 HOH A 9 409 502 HOH HOH ? O 10 HOH A 10 410 519 HOH HOH ? O 10 HOH A 11 411 435 HOH HOH ? O 10 HOH A 12 412 429 HOH HOH ? O 10 HOH A 13 413 406 HOH HOH ? O 10 HOH A 14 414 517 HOH HOH ? O 10 HOH A 15 415 526 HOH HOH ? O 10 HOH A 16 416 423 HOH HOH ? O 10 HOH A 17 417 426 HOH HOH ? O 10 HOH A 18 418 512 HOH HOH ? O 10 HOH A 19 419 421 HOH HOH ? O 10 HOH A 20 420 433 HOH HOH ? O 10 HOH A 21 421 407 HOH HOH ? O 10 HOH A 22 422 430 HOH HOH ? O 10 HOH A 23 423 424 HOH HOH ? O 10 HOH A 24 424 420 HOH HOH ? O 10 HOH A 25 425 404 HOH HOH ? O 10 HOH A 26 426 440 HOH HOH ? O 10 HOH A 27 427 425 HOH HOH ? O 10 HOH A 28 428 436 HOH HOH ? O 10 HOH A 29 429 422 HOH HOH ? O 10 HOH A 30 430 414 HOH HOH ? O 10 HOH A 31 431 431 HOH HOH ? O 10 HOH A 32 432 521 HOH HOH ? O 10 HOH A 33 433 520 HOH HOH ? O 10 HOH A 34 434 503 HOH HOH ? O 10 HOH A 35 435 515 HOH HOH ? O 10 HOH A 36 436 513 HOH HOH ? O 10 HOH A 37 437 439 HOH HOH ? O 10 HOH A 38 438 516 HOH HOH ? O 10 HOH A 39 439 405 HOH HOH ? O 10 HOH A 40 440 434 HOH HOH ? O 10 HOH A 41 441 514 HOH HOH ? O 10 HOH A 42 442 427 HOH HOH ? O 10 HOH A 43 443 437 HOH HOH ? O 10 HOH A 44 444 523 HOH HOH ? O 10 HOH A 45 445 432 HOH HOH ? O 10 HOH A 46 446 522 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . C 3 11.215 8.555 9.145 1 41.29 ? O1 PG4 302 A 1 HETATM 2 C C1 PG4 . . . C 3 10.274 8.691 8.097 1 40.34 ? C1 PG4 302 A 1 HETATM 3 C C2 PG4 . . . C 3 8.891 8.383 8.581 1 47.86 ? C2 PG4 302 A 1 HETATM 4 O O2 PG4 . . . C 3 8.171 9.59 8.763 1 33.18 ? O2 PG4 302 A 1 HETATM 5 C C3 PG4 . . . C 3 7.414 9.928 7.612 1 44.66 ? C3 PG4 302 A 1 HETATM 6 C C4 PG4 . . . C 3 7.384 11.411 7.453 1 42.4 ? C4 PG4 302 A 1 HETATM 7 O O3 PG4 . . . C 3 6.94 11.779 6.152 1 47.62 ? O3 PG4 302 A 1 HETATM 8 C C5 PG4 . . . C 3 8.028 11.631 5.249 1 47.38 ? C5 PG4 302 A 1 HETATM 9 C C6 PG4 . . . C 3 9.14 12.587 5.557 1 54.63 ? C6 PG4 302 A 1 HETATM 10 O O4 PG4 . . . C 3 8.662 13.799 6.134 1 44.44 ? O4 PG4 302 A 1 HETATM 11 C C7 PG4 . . . C 3 8.825 14.822 5.168 1 44.97 ? C7 PG4 302 A 1 HETATM 12 C C8 PG4 . . . C 3 7.521 15.048 4.468 1 46.66 ? C8 PG4 302 A 1 HETATM 13 O O5 PG4 . . . C 3 7.72 15.968 3.41 1 51.99 ? O5 PG4 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 206 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #