data_8H7N # _model_server_result.job_id 6iwDomYxZAc9fPaBbD4ETw _model_server_result.datetime_utc '2025-10-01 09:29:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8H7N # _exptl.entry_id 8H7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.313 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description triazophos _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8H7N _cell.length_a 84.386 _cell.length_b 84.386 _cell.length_c 32.988 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OG SER 21 A SER 21 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? # _chem_comp.formula 'C12 H16 N3 O3 P S' _chem_comp.formula_weight 313.313 _chem_comp.id WYW _chem_comp.mon_nstd_flag ? _chem_comp.name triazophos _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'O,O-diethyl O-(1-phenyl-1H-1,2,4-triazol-3-yl) phosphorothioate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N3 WYW doub 385 n y C6 N2 WYW sing 386 n y C8 C9 WYW doub 387 n y C8 C7 WYW sing 388 n y C9 C10 WYW sing 389 n y N3 C5 WYW sing 390 n y N2 C7 WYW sing 391 n n N2 N1 WYW sing 392 n y C7 C12 WYW doub 393 n y S1 P1 WYW doub 394 n n C10 C11 WYW doub 395 n y C5 N1 WYW doub 396 n y C5 O3 WYW sing 397 n n O3 P1 WYW sing 398 n n C12 C11 WYW sing 399 n y C3 O2 WYW sing 400 n n C3 C4 WYW sing 401 n n P1 O2 WYW sing 402 n n P1 O1 WYW sing 403 n n O1 C2 WYW sing 404 n n C2 C1 WYW sing 405 n n C4 H1 WYW sing 406 n n C4 H2 WYW sing 407 n n C4 H3 WYW sing 408 n n C6 H4 WYW sing 409 n n C8 H5 WYW sing 410 n n C10 H6 WYW sing 411 n n C1 H7 WYW sing 412 n n C1 H8 WYW sing 413 n n C1 H9 WYW sing 414 n n C11 H10 WYW sing 415 n n C12 H11 WYW sing 416 n n C2 H12 WYW sing 417 n n C2 H13 WYW sing 418 n n C3 H14 WYW sing 419 n n C3 H15 WYW sing 420 n n C9 H16 WYW sing 421 n n # _atom_sites.entry_id 8H7N _atom_sites.fract_transf_matrix[1][1] 0.01185 _atom_sites.fract_transf_matrix[1][2] 0.006842 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 204 EDO EDO ? C 2 EDO A 1 202 205 EDO EDO ? D 2 EDO A 1 203 206 EDO EDO ? E 3 WYW A 1 204 207 WYW LIG ? F 4 NA A 1 205 1 NA NA ? G 5 HOH A 1 301 46 HOH HOH ? G 5 HOH A 2 302 18 HOH HOH ? G 5 HOH A 3 303 30 HOH HOH ? G 5 HOH A 4 304 35 HOH HOH ? G 5 HOH A 5 305 12 HOH HOH ? G 5 HOH A 6 306 2 HOH HOH ? G 5 HOH A 7 307 1 HOH HOH ? G 5 HOH A 8 308 10 HOH HOH ? G 5 HOH A 9 309 3 HOH HOH ? G 5 HOH A 10 310 20 HOH HOH ? G 5 HOH A 11 311 36 HOH HOH ? G 5 HOH A 12 312 19 HOH HOH ? G 5 HOH A 13 313 52 HOH HOH ? G 5 HOH A 14 314 17 HOH HOH ? G 5 HOH A 15 315 8 HOH HOH ? G 5 HOH A 16 316 9 HOH HOH ? G 5 HOH A 17 317 50 HOH HOH ? G 5 HOH A 18 318 7 HOH HOH ? G 5 HOH A 19 319 4 HOH HOH ? G 5 HOH A 20 320 5 HOH HOH ? G 5 HOH A 21 321 15 HOH HOH ? G 5 HOH A 22 322 33 HOH HOH ? G 5 HOH A 23 323 14 HOH HOH ? G 5 HOH A 24 324 32 HOH HOH ? G 5 HOH A 25 325 26 HOH HOH ? G 5 HOH A 26 326 38 HOH HOH ? G 5 HOH A 27 327 53 HOH HOH ? G 5 HOH A 28 328 11 HOH HOH ? G 5 HOH A 29 329 34 HOH HOH ? G 5 HOH A 30 330 13 HOH HOH ? G 5 HOH A 31 331 21 HOH HOH ? G 5 HOH A 32 332 22 HOH HOH ? G 5 HOH A 33 333 23 HOH HOH ? G 5 HOH A 34 334 39 HOH HOH ? G 5 HOH A 35 335 16 HOH HOH ? G 5 HOH A 36 336 44 HOH HOH ? G 5 HOH A 37 337 48 HOH HOH ? G 5 HOH A 38 338 45 HOH HOH ? G 5 HOH A 39 339 25 HOH HOH ? G 5 HOH A 40 340 24 HOH HOH ? G 5 HOH A 41 341 42 HOH HOH ? G 5 HOH A 42 342 43 HOH HOH ? G 5 HOH A 43 343 41 HOH HOH ? G 5 HOH A 44 344 54 HOH HOH ? G 5 HOH A 45 345 55 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 WYW . . . E 3 18.948 -13.307 -7.619 1 41.55 ? N1 WYW 204 A 1 HETATM 2 N N3 WYW . . . E 3 19.751 -14.426 -9.338 1 41.43 ? N3 WYW 204 A 1 HETATM 3 C C4 WYW . . . E 3 24.898 -15.664 -6.02 1 36.14 ? C4 WYW 204 A 1 HETATM 4 C C5 WYW . . . E 3 19.974 -14.013 -8.072 1 39.5 ? C5 WYW 204 A 1 HETATM 5 C C6 WYW . . . E 3 18.563 -13.989 -9.674 1 42.39 ? C6 WYW 204 A 1 HETATM 6 C C7 WYW . . . E 3 16.779 -12.637 -8.516 1 44.1 ? C7 WYW 204 A 1 HETATM 7 C C8 WYW . . . E 3 16.053 -12.312 -9.652 1 47.17 ? C8 WYW 204 A 1 HETATM 8 C C10 WYW . . . E 3 14.328 -11.397 -8.261 1 49.59 ? C10 WYW 204 A 1 HETATM 9 C C1 WYW . . . E 3 20.957 -10.911 -3.935 1 36.33 ? C1 WYW 204 A 1 HETATM 10 C C11 WYW . . . E 3 15.048 -11.736 -7.138 1 45.69 ? C11 WYW 204 A 1 HETATM 11 C C12 WYW . . . E 3 16.279 -12.361 -7.253 1 42.8 ? C12 WYW 204 A 1 HETATM 12 C C2 WYW . . . E 3 21.865 -11.332 -5.019 1 36.48 ? C2 WYW 204 A 1 HETATM 13 C C3 WYW . . . E 3 24.04 -14.889 -6.937 1 31.55 ? C3 WYW 204 A 1 HETATM 14 C C9 WYW . . . E 3 14.827 -11.682 -9.511 1 44.86 ? C9 WYW 204 A 1 HETATM 15 N N2 WYW . . . E 3 18.037 -13.293 -8.651 1 43.51 ? N2 WYW 204 A 1 HETATM 16 O O1 WYW . . . E 3 21.312 -12.47 -5.737 1 40.43 ? O1 WYW 204 A 1 HETATM 17 O O2 WYW . . . E 3 23.172 -13.995 -6.187 1 36.66 ? O2 WYW 204 A 1 HETATM 18 O O3 WYW . . . E 3 21.12 -14.274 -7.411 1 40.04 ? O3 WYW 204 A 1 HETATM 19 P P1 WYW . . . E 3 22.093 -13.132 -6.92 1 40.07 ? P1 WYW 204 A 1 HETATM 20 S S1 WYW . . . E 3 22.691 -11.971 -8.308 1 36.16 ? S1 WYW 204 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 204 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #