data_8H85 # _model_server_result.job_id e0egjspAI8TozdFbYmRgiw _model_server_result.datetime_utc '2024-11-15 02:44:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8H85 # _exptl.entry_id 8H85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-HYDROXYPROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H85 _cell.length_a 75.39 _cell.length_b 75.39 _cell.length_c 143.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O3' _chem_comp.formula_weight 131.13 _chem_comp.id HY3 _chem_comp.mon_nstd_flag n _chem_comp.name 3-HYDROXYPROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms '(2S,3S)-3-hydroxypyrrolidine-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O HY3 doub 152 n n C CA HY3 sing 153 n n C OXT HY3 sing 154 n n N CA HY3 sing 155 n n N C5 HY3 sing 156 n n N H HY3 sing 157 n n CA C3 HY3 sing 158 n n CA HA HY3 sing 159 n n C3 C4 HY3 sing 160 n n C3 O2 HY3 sing 161 n n C3 HB HY3 sing 162 n n C4 C5 HY3 sing 163 n n C4 HG HY3 sing 164 n n C4 HGA HY3 sing 165 n n C5 HD HY3 sing 166 n n C5 HDA HY3 sing 167 n n O2 HO1 HY3 sing 168 n n OXT HXT HY3 sing 169 n n # _atom_sites.entry_id 8H85 _atom_sites.fract_transf_matrix[1][1] 0.013264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HY3 A 1 301 301 HY3 HY3 . C 3 HOH A 1 401 48 HOH HOH . C 3 HOH A 2 402 19 HOH HOH . C 3 HOH A 3 403 7 HOH HOH . C 3 HOH A 4 404 33 HOH HOH . C 3 HOH A 5 405 45 HOH HOH . C 3 HOH A 6 406 404 HOH HOH . C 3 HOH A 7 407 26 HOH HOH . C 3 HOH A 8 408 4 HOH HOH . C 3 HOH A 9 409 32 HOH HOH . C 3 HOH A 10 410 402 HOH HOH . C 3 HOH A 11 411 401 HOH HOH . C 3 HOH A 12 412 15 HOH HOH . C 3 HOH A 13 413 12 HOH HOH . C 3 HOH A 14 414 28 HOH HOH . C 3 HOH A 15 415 50 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 403 HOH HOH . C 3 HOH A 18 418 409 HOH HOH . C 3 HOH A 19 419 6 HOH HOH . C 3 HOH A 20 420 413 HOH HOH . C 3 HOH A 21 421 44 HOH HOH . C 3 HOH A 22 422 1 HOH HOH . C 3 HOH A 23 423 405 HOH HOH . C 3 HOH A 24 424 22 HOH HOH . C 3 HOH A 25 425 49 HOH HOH . C 3 HOH A 26 426 20 HOH HOH . C 3 HOH A 27 427 2 HOH HOH . C 3 HOH A 28 428 21 HOH HOH . C 3 HOH A 29 429 406 HOH HOH . C 3 HOH A 30 430 411 HOH HOH . C 3 HOH A 31 431 35 HOH HOH . C 3 HOH A 32 432 408 HOH HOH . C 3 HOH A 33 433 10 HOH HOH . C 3 HOH A 34 434 412 HOH HOH . C 3 HOH A 35 435 407 HOH HOH . C 3 HOH A 36 436 37 HOH HOH . C 3 HOH A 37 437 423 HOH HOH . C 3 HOH A 38 438 31 HOH HOH . C 3 HOH A 39 439 415 HOH HOH . C 3 HOH A 40 440 11 HOH HOH . C 3 HOH A 41 441 16 HOH HOH . C 3 HOH A 42 442 25 HOH HOH . C 3 HOH A 43 443 414 HOH HOH . C 3 HOH A 44 444 5 HOH HOH . C 3 HOH A 45 445 13 HOH HOH . C 3 HOH A 46 446 3 HOH HOH . C 3 HOH A 47 447 9 HOH HOH . C 3 HOH A 48 448 17 HOH HOH . C 3 HOH A 49 449 421 HOH HOH . C 3 HOH A 50 450 27 HOH HOH . C 3 HOH A 51 451 419 HOH HOH . C 3 HOH A 52 452 416 HOH HOH . C 3 HOH A 53 453 422 HOH HOH . C 3 HOH A 54 454 46 HOH HOH . C 3 HOH A 55 455 36 HOH HOH . C 3 HOH A 56 456 43 HOH HOH . C 3 HOH A 57 457 8 HOH HOH . C 3 HOH A 58 458 47 HOH HOH . C 3 HOH A 59 459 41 HOH HOH . C 3 HOH A 60 460 39 HOH HOH . C 3 HOH A 61 461 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C HY3 . . . B 2 -22.053 14.234 -13.507 1 67.89 ? C HY3 301 A 1 HETATM 2 O O HY3 . . . B 2 -21.168 13.884 -14.232 1 55.84 ? O HY3 301 A 1 HETATM 3 N N HY3 . . . B 2 -23.355 13.834 -11.32 1 78.42 ? N HY3 301 A 1 HETATM 4 C CA HY3 . . . B 2 -22.477 13.27 -12.378 1 78.76 ? CA HY3 301 A 1 HETATM 5 C C3 HY3 . . . B 2 -23.309 12.126 -12.988 1 75.36 ? C3 HY3 301 A 1 HETATM 6 C C4 HY3 . . . B 2 -24.754 12.598 -12.831 1 70.8 ? C4 HY3 301 A 1 HETATM 7 C C5 HY3 . . . B 2 -24.746 13.407 -11.537 1 70.88 ? C5 HY3 301 A 1 HETATM 8 O O2 HY3 . . . B 2 -23.003 10.93 -12.285 1 68.89 ? O2 HY3 301 A 1 HETATM 9 O OXT HY3 . . . B 2 -22.657 15.249 -13.623 1 74.87 ? OXT HY3 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #