data_8H86 # _model_server_result.job_id qlVKbSlQnJ07zPeu9FIksg _model_server_result.datetime_utc '2024-11-26 00:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 8H86 # _exptl.entry_id 8H86 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H86 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 (1-3) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.056154 -0.998422 0 0.998422 0.056154 0 0 0 1 67.25908 -75.27564 -78.97076 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 168.88687 45.2531 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.2531 168.88687 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 235 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 260 n n C1 O2 PLM doub 261 n n C1 C2 PLM sing 262 n n O1 H PLM sing 263 n n C2 C3 PLM sing 264 n n C2 H21 PLM sing 265 n n C2 H22 PLM sing 266 n n C3 C4 PLM sing 267 n n C3 H31 PLM sing 268 n n C3 H32 PLM sing 269 n n C4 C5 PLM sing 270 n n C4 H41 PLM sing 271 n n C4 H42 PLM sing 272 n n C5 C6 PLM sing 273 n n C5 H51 PLM sing 274 n n C5 H52 PLM sing 275 n n C6 C7 PLM sing 276 n n C6 H61 PLM sing 277 n n C6 H62 PLM sing 278 n n C7 C8 PLM sing 279 n n C7 H71 PLM sing 280 n n C7 H72 PLM sing 281 n n C8 C9 PLM sing 282 n n C8 H81 PLM sing 283 n n C8 H82 PLM sing 284 n n C9 CA PLM sing 285 n n C9 H91 PLM sing 286 n n C9 H92 PLM sing 287 n n CA CB PLM sing 288 n n CA HA1 PLM sing 289 n n CA HA2 PLM sing 290 n n CB CC PLM sing 291 n n CB HB1 PLM sing 292 n n CB HB2 PLM sing 293 n n CC CD PLM sing 294 n n CC HC1 PLM sing 295 n n CC HC2 PLM sing 296 n n CD CE PLM sing 297 n n CD HD1 PLM sing 298 n n CD HD2 PLM sing 299 n n CE CF PLM sing 300 n n CE HE1 PLM sing 301 n n CE HE2 PLM sing 302 n n CF CG PLM sing 303 n n CF HF1 PLM sing 304 n n CF HF2 PLM sing 305 n n CG HG1 PLM sing 306 n n CG HG2 PLM sing 307 n n CG HG3 PLM sing 308 n n # _atom_sites.entry_id 8H86 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 PSC A 1 302 401 PSC PSC . D 3 PSC A 1 303 402 PSC PSC . E 4 PLM A 1 304 403 PLM PLM . F 4 PLM A 1 305 404 PLM PLM . G 3 PSC A 1 306 405 PSC PSC . H 4 PLM A 1 307 406 PLM PLM . I 4 PLM A 1 308 407 PLM PLM . J 4 PLM A 1 309 408 PLM PLM . K 3 PSC A 1 310 409 PSC PSC . L 3 PSC A 1 311 410 PSC PSC . M 3 PSC A 1 312 411 PSC PSC . N 3 PSC A 1 313 412 PSC PSC . O 3 PSC A 1 314 413 PSC PSC . P 3 PSC A 1 315 414 PSC PSC . Q 3 PSC A 1 316 415 PSC PSC . R 5 HOH A 1 401 502 HOH HOH . R 5 HOH A 2 402 506 HOH HOH . R 5 HOH A 3 403 513 HOH HOH . R 5 HOH A 4 404 515 HOH HOH . R 5 HOH A 5 405 510 HOH HOH . R 5 HOH A 6 406 504 HOH HOH . R 5 HOH A 7 407 511 HOH HOH . R 5 HOH A 8 408 516 HOH HOH . R 5 HOH A 9 409 507 HOH HOH . R 5 HOH A 10 410 512 HOH HOH . R 5 HOH A 11 411 514 HOH HOH . R 5 HOH A 12 412 501 HOH HOH . R 5 HOH A 13 413 503 HOH HOH . R 5 HOH A 14 414 519 HOH HOH . R 5 HOH A 15 415 505 HOH HOH . R 5 HOH A 16 416 521 HOH HOH . R 5 HOH A 17 417 508 HOH HOH . R 5 HOH A 18 418 518 HOH HOH . R 5 HOH A 19 419 520 HOH HOH . R 5 HOH A 20 420 517 HOH HOH . R 5 HOH A 21 421 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 4 90.477 50.423 57.532 1 163.12 ? C1 PLM 308 A 1 HETATM 2 C C2 PLM . . . I 4 90.359 50.82 58.995 1 153.32 ? C2 PLM 308 A 1 HETATM 3 C C3 PLM . . . I 4 90.793 49.768 59.978 1 150.11 ? C3 PLM 308 A 1 HETATM 4 C C4 PLM . . . I 4 90.146 49.924 61.348 1 139.39 ? C4 PLM 308 A 1 HETATM 5 C C5 PLM . . . I 4 90.877 50.846 62.292 1 141.62 ? C5 PLM 308 A 1 HETATM 6 C C6 PLM . . . I 4 90.775 50.456 63.756 1 151.87 ? C6 PLM 308 A 1 HETATM 7 C C7 PLM . . . I 4 91.011 51.592 64.734 1 148.78 ? C7 PLM 308 A 1 HETATM 8 C C8 PLM . . . I 4 92.433 52.113 64.779 1 149.86 ? C8 PLM 308 A 1 HETATM 9 C C9 PLM . . . I 4 92.612 53.405 65.553 1 151.57 ? C9 PLM 308 A 1 HETATM 10 C CA PLM . . . I 4 92.318 53.291 67.035 1 150.02 ? CA PLM 308 A 1 HETATM 11 C CB PLM . . . I 4 92.984 54.336 67.903 1 143.27 ? CB PLM 308 A 1 HETATM 12 C CC PLM . . . I 4 92.93 54.033 69.4 1 151.4 ? CC PLM 308 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #