data_8H86 # _model_server_result.job_id 2i55Wsg4wvtuk-GF9EZZFQ _model_server_result.datetime_utc '2024-11-26 00:56:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":311}' # _entry.id 8H86 # _exptl.entry_id 8H86 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 759.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H86 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 (1-3) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.056154 -0.998422 0 0.998422 0.056154 0 0 0 1 67.25908 -75.27564 -78.97076 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 168.88687 45.2531 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.2531 168.88687 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 235 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H81 N O8 P 1' _chem_comp.formula_weight 759.068 _chem_comp.id PSC _chem_comp.mon_nstd_flag . _chem_comp.name '(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLCHOLINE;2-LINOLEOYL-1-PALMITOYL-SN-GYCEROL-3-PHOSPHOCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O11 PSC sing 326 n n P O12 PSC sing 327 n n P O13 PSC sing 328 n n P O14 PSC doub 329 n n N C05 PSC sing 330 n n N C06 PSC sing 331 n n N C07 PSC sing 332 n n N C08 PSC sing 333 n n C01 C02 PSC sing 334 n n C01 O03 PSC sing 335 n n C01 H011 PSC sing 336 n n C01 H012 PSC sing 337 n n C02 C03 PSC sing 338 n n C02 O01 PSC sing 339 n n C02 H02 PSC sing 340 n n C03 O11 PSC sing 341 n n C03 H031 PSC sing 342 n n C03 H032 PSC sing 343 n n C04 C05 PSC sing 344 n n C04 O12 PSC sing 345 n n C04 H041 PSC sing 346 n n C04 H042 PSC sing 347 n n C05 H051 PSC sing 348 n n C05 H052 PSC sing 349 n n C06 H061 PSC sing 350 n n C06 H062 PSC sing 351 n n C06 H063 PSC sing 352 n n C07 H071 PSC sing 353 n n C07 H072 PSC sing 354 n n C07 H073 PSC sing 355 n n C08 H081 PSC sing 356 n n C08 H082 PSC sing 357 n n C08 H083 PSC sing 358 n n O01 C1 PSC sing 359 n n O02 C1 PSC doub 360 n n O03 C19 PSC sing 361 n n O04 C19 PSC doub 362 n n O13 H13 PSC sing 363 n n C1 C2 PSC sing 364 n n C2 C3 PSC sing 365 n n C2 H21 PSC sing 366 n n C2 H22 PSC sing 367 n n C3 C4 PSC sing 368 n n C3 H31 PSC sing 369 n n C3 H32 PSC sing 370 n n C4 C5 PSC sing 371 n n C4 H41 PSC sing 372 n n C4 H42 PSC sing 373 n n C5 C6 PSC sing 374 n n C5 H51 PSC sing 375 n n C5 H52 PSC sing 376 n n C6 C7 PSC sing 377 n n C6 H61 PSC sing 378 n n C6 H62 PSC sing 379 n n C7 C8 PSC sing 380 n n C7 H71 PSC sing 381 n n C7 H72 PSC sing 382 n n C8 C9 PSC sing 383 n n C8 H81 PSC sing 384 n n C8 H82 PSC sing 385 n n C9 C10 PSC doub 386 z n C9 H9 PSC sing 387 n n C10 C11 PSC sing 388 n n C10 H10 PSC sing 389 n n C11 C12 PSC sing 390 n n C11 H111 PSC sing 391 n n C11 H112 PSC sing 392 n n C12 C13 PSC doub 393 e n C12 H12 PSC sing 394 n n C13 C14 PSC sing 395 n n C13 H1 PSC sing 396 n n C14 C15 PSC sing 397 n n C14 H141 PSC sing 398 n n C14 H142 PSC sing 399 n n C15 C16 PSC sing 400 n n C15 H151 PSC sing 401 n n C15 H152 PSC sing 402 n n C16 C17 PSC sing 403 n n C16 H161 PSC sing 404 n n C16 H162 PSC sing 405 n n C17 C18 PSC sing 406 n n C17 H171 PSC sing 407 n n C17 H172 PSC sing 408 n n C18 H181 PSC sing 409 n n C18 H182 PSC sing 410 n n C18 H183 PSC sing 411 n n C19 C20 PSC sing 412 n n C20 C21 PSC sing 413 n n C20 H201 PSC sing 414 n n C20 H202 PSC sing 415 n n C21 C22 PSC sing 416 n n C21 H211 PSC sing 417 n n C21 H212 PSC sing 418 n n C22 C23 PSC sing 419 n n C22 H221 PSC sing 420 n n C22 H222 PSC sing 421 n n C23 C24 PSC sing 422 n n C23 H231 PSC sing 423 n n C23 H232 PSC sing 424 n n C24 C25 PSC sing 425 n n C24 H241 PSC sing 426 n n C24 H242 PSC sing 427 n n C25 C26 PSC sing 428 n n C25 H251 PSC sing 429 n n C25 H252 PSC sing 430 n n C26 C27 PSC sing 431 n n C26 H261 PSC sing 432 n n C26 H262 PSC sing 433 n n C27 C28 PSC sing 434 n n C27 H271 PSC sing 435 n n C27 H272 PSC sing 436 n n C28 C29 PSC sing 437 n n C28 H281 PSC sing 438 n n C28 H282 PSC sing 439 n n C29 C30 PSC sing 440 n n C29 H291 PSC sing 441 n n C29 H292 PSC sing 442 n n C30 C31 PSC sing 443 n n C30 H301 PSC sing 444 n n C30 H302 PSC sing 445 n n C31 C32 PSC sing 446 n n C31 H311 PSC sing 447 n n C31 H312 PSC sing 448 n n C32 C33 PSC sing 449 n n C32 H321 PSC sing 450 n n C32 H322 PSC sing 451 n n C33 C34 PSC sing 452 n n C33 H331 PSC sing 453 n n C33 H332 PSC sing 454 n n C34 H341 PSC sing 455 n n C34 H342 PSC sing 456 n n C34 H343 PSC sing 457 n n # _atom_sites.entry_id 8H86 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 PSC A 1 302 401 PSC PSC . D 3 PSC A 1 303 402 PSC PSC . E 4 PLM A 1 304 403 PLM PLM . F 4 PLM A 1 305 404 PLM PLM . G 3 PSC A 1 306 405 PSC PSC . H 4 PLM A 1 307 406 PLM PLM . I 4 PLM A 1 308 407 PLM PLM . J 4 PLM A 1 309 408 PLM PLM . K 3 PSC A 1 310 409 PSC PSC . L 3 PSC A 1 311 410 PSC PSC . M 3 PSC A 1 312 411 PSC PSC . N 3 PSC A 1 313 412 PSC PSC . O 3 PSC A 1 314 413 PSC PSC . P 3 PSC A 1 315 414 PSC PSC . Q 3 PSC A 1 316 415 PSC PSC . R 5 HOH A 1 401 502 HOH HOH . R 5 HOH A 2 402 506 HOH HOH . R 5 HOH A 3 403 513 HOH HOH . R 5 HOH A 4 404 515 HOH HOH . R 5 HOH A 5 405 510 HOH HOH . R 5 HOH A 6 406 504 HOH HOH . R 5 HOH A 7 407 511 HOH HOH . R 5 HOH A 8 408 516 HOH HOH . R 5 HOH A 9 409 507 HOH HOH . R 5 HOH A 10 410 512 HOH HOH . R 5 HOH A 11 411 514 HOH HOH . R 5 HOH A 12 412 501 HOH HOH . R 5 HOH A 13 413 503 HOH HOH . R 5 HOH A 14 414 519 HOH HOH . R 5 HOH A 15 415 505 HOH HOH . R 5 HOH A 16 416 521 HOH HOH . R 5 HOH A 17 417 508 HOH HOH . R 5 HOH A 18 418 518 HOH HOH . R 5 HOH A 19 419 520 HOH HOH . R 5 HOH A 20 420 517 HOH HOH . R 5 HOH A 21 421 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PSC . . . L 3 67.288 64.892 62.69 1 115.49 ? C1 PSC 311 A 1 HETATM 2 C C2 PSC . . . L 3 67.806 65.54 63.958 1 122.9 ? C2 PSC 311 A 1 HETATM 3 C C3 PSC . . . L 3 67.572 64.736 65.225 1 108.44 ? C3 PSC 311 A 1 HETATM 4 C C4 PSC . . . L 3 66.848 65.505 66.295 1 117.07 ? C4 PSC 311 A 1 HETATM 5 C C5 PSC . . . L 3 67.672 65.753 67.55 1 114.57 ? C5 PSC 311 A 1 HETATM 6 C C6 PSC . . . L 3 67.281 64.924 68.724 1 112.11 ? C6 PSC 311 A 1 HETATM 7 C C7 PSC . . . L 3 67.274 65.695 70.009 1 128.91 ? C7 PSC 311 A 1 HETATM 8 C C8 PSC . . . L 3 66.441 65.529 71.022 1 145.91 ? C8 PSC 311 A 1 HETATM 9 C C9 PSC . . . L 3 66.752 64.834 72.322 1 143.41 ? C9 PSC 311 A 1 HETATM 10 C C10 PSC . . . L 3 65.553 64.62 73.196 1 145.89 ? C10 PSC 311 A 1 HETATM 11 C C11 PSC . . . L 3 64.802 63.527 73.239 1 129.71 ? C11 PSC 311 A 1 HETATM 12 C C12 PSC . . . L 3 63.372 63.429 72.807 1 110.21 ? C12 PSC 311 A 1 HETATM 13 C C13 PSC . . . L 3 63.222 62.971 71.388 1 103.54 ? C13 PSC 311 A 1 HETATM 14 C C14 PSC . . . L 3 62.23 61.861 71.179 1 100.55 ? C14 PSC 311 A 1 HETATM 15 C C15 PSC . . . L 3 60.812 62.316 71.139 1 91.59 ? C15 PSC 311 A 1 HETATM 16 C C16 PSC . . . L 3 60.412 62.692 69.778 1 86.75 ? C16 PSC 311 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #