data_8H87 # _model_server_result.job_id AVBXvK3awCASgBys0KeA4A _model_server_result.datetime_utc '2025-10-01 10:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 8H87 # _exptl.entry_id 8H87 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H87 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 (1-3) A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.992176 -0.124846 0 0.124846 -0.992176 0 0 0 1 78.80595 61.19011 -77.3462 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 166.92311 44.72691 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 44.72692 166.92311 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.267 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag ? _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 260 n n C1 O2 PLM doub 261 n n C1 C2 PLM sing 262 n n O1 H PLM sing 263 n n C2 C3 PLM sing 264 n n C2 H21 PLM sing 265 n n C2 H22 PLM sing 266 n n C3 C4 PLM sing 267 n n C3 H31 PLM sing 268 n n C3 H32 PLM sing 269 n n C4 C5 PLM sing 270 n n C4 H41 PLM sing 271 n n C4 H42 PLM sing 272 n n C5 C6 PLM sing 273 n n C5 H51 PLM sing 274 n n C5 H52 PLM sing 275 n n C6 C7 PLM sing 276 n n C6 H61 PLM sing 277 n n C6 H62 PLM sing 278 n n C7 C8 PLM sing 279 n n C7 H71 PLM sing 280 n n C7 H72 PLM sing 281 n n C8 C9 PLM sing 282 n n C8 H81 PLM sing 283 n n C8 H82 PLM sing 284 n n C9 CA PLM sing 285 n n C9 H91 PLM sing 286 n n C9 H92 PLM sing 287 n n CA CB PLM sing 288 n n CA HA1 PLM sing 289 n n CA HA2 PLM sing 290 n n CB CC PLM sing 291 n n CB HB1 PLM sing 292 n n CB HB2 PLM sing 293 n n CC CD PLM sing 294 n n CC HC1 PLM sing 295 n n CC HC2 PLM sing 296 n n CD CE PLM sing 297 n n CD HD1 PLM sing 298 n n CD HD2 PLM sing 299 n n CE CF PLM sing 300 n n CE HE1 PLM sing 301 n n CE HE2 PLM sing 302 n n CF CG PLM sing 303 n n CF HF1 PLM sing 304 n n CF HF2 PLM sing 305 n n CG HG1 PLM sing 306 n n CG HG2 PLM sing 307 n n CG HG3 PLM sing 308 n n # _atom_sites.entry_id 8H87 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 401 301 RET RET ? C 3 PSC A 1 402 401 PSC PSC ? D 3 PSC A 1 403 402 PSC PSC ? E 3 PSC A 1 404 403 PSC PSC ? F 3 PSC A 1 405 404 PSC PSC ? G 3 PSC A 1 406 405 PSC PSC ? H 3 PSC A 1 407 406 PSC PSC ? I 4 PLM A 1 408 407 PLM PLM ? J 4 PLM A 1 409 408 PLM PLM ? K 4 PLM A 1 410 409 PLM PLM ? L 4 PLM A 1 411 410 PLM PLM ? M 4 PLM A 1 412 411 PLM PLM ? N 4 PLM A 1 413 412 PLM PLM ? O 4 PLM A 1 414 413 PLM PLM ? P 4 PLM A 1 415 414 PLM PLM ? Q 4 PLM A 1 416 415 PLM PLM ? R 5 HOH A 1 501 516 HOH HOH ? R 5 HOH A 2 502 513 HOH HOH ? R 5 HOH A 3 503 535 HOH HOH ? R 5 HOH A 4 504 537 HOH HOH ? R 5 HOH A 5 505 542 HOH HOH ? R 5 HOH A 6 506 528 HOH HOH ? R 5 HOH A 7 507 532 HOH HOH ? R 5 HOH A 8 508 507 HOH HOH ? R 5 HOH A 9 509 545 HOH HOH ? R 5 HOH A 10 510 523 HOH HOH ? R 5 HOH A 11 511 536 HOH HOH ? R 5 HOH A 12 512 524 HOH HOH ? R 5 HOH A 13 513 522 HOH HOH ? R 5 HOH A 14 514 521 HOH HOH ? R 5 HOH A 15 515 530 HOH HOH ? R 5 HOH A 16 516 540 HOH HOH ? R 5 HOH A 17 517 541 HOH HOH ? R 5 HOH A 18 518 517 HOH HOH ? R 5 HOH A 19 519 515 HOH HOH ? R 5 HOH A 20 520 502 HOH HOH ? R 5 HOH A 21 521 505 HOH HOH ? R 5 HOH A 22 522 526 HOH HOH ? R 5 HOH A 23 523 519 HOH HOH ? R 5 HOH A 24 524 509 HOH HOH ? R 5 HOH A 25 525 504 HOH HOH ? R 5 HOH A 26 526 510 HOH HOH ? R 5 HOH A 27 527 503 HOH HOH ? R 5 HOH A 28 528 543 HOH HOH ? R 5 HOH A 29 529 533 HOH HOH ? R 5 HOH A 30 530 546 HOH HOH ? R 5 HOH A 31 531 501 HOH HOH ? R 5 HOH A 32 532 534 HOH HOH ? R 5 HOH A 33 533 529 HOH HOH ? R 5 HOH A 34 534 549 HOH HOH ? R 5 HOH A 35 535 539 HOH HOH ? R 5 HOH A 36 536 525 HOH HOH ? R 5 HOH A 37 537 514 HOH HOH ? R 5 HOH A 38 538 547 HOH HOH ? R 5 HOH A 39 539 512 HOH HOH ? R 5 HOH A 40 540 511 HOH HOH ? R 5 HOH A 41 541 508 HOH HOH ? R 5 HOH A 42 542 548 HOH HOH ? R 5 HOH A 43 543 506 HOH HOH ? R 5 HOH A 44 544 518 HOH HOH ? R 5 HOH A 45 545 538 HOH HOH ? R 5 HOH A 46 546 527 HOH HOH ? R 5 HOH A 47 547 520 HOH HOH ? R 5 HOH A 48 548 544 HOH HOH ? R 5 HOH A 49 549 531 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 PLM . . . N 4 62.062 45.395 56.527 1 83.41 ? C4 PLM 413 A 1 HETATM 2 C C5 PLM . . . N 4 62.397 46.365 57.631 1 81.49 ? C5 PLM 413 A 1 HETATM 3 C C6 PLM . . . N 4 62.262 45.824 59.03 1 77.05 ? C6 PLM 413 A 1 HETATM 4 C C7 PLM . . . N 4 62.513 46.864 60.091 1 85.11 ? C7 PLM 413 A 1 HETATM 5 C C8 PLM . . . N 4 61.307 47.19 60.931 1 92.68 ? C8 PLM 413 A 1 HETATM 6 C C9 PLM . . . N 4 60.997 46.148 61.989 1 91.33 ? C9 PLM 413 A 1 HETATM 7 C CA PLM . . . N 4 59.618 46.27 62.618 1 94.21 ? CA PLM 413 A 1 HETATM 8 C CB PLM . . . N 4 59.61 46.356 64.138 1 101.79 ? CB PLM 413 A 1 HETATM 9 C CC PLM . . . N 4 59.013 45.155 64.847 1 96.34 ? CC PLM 413 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #