data_8H8P # _model_server_result.job_id pu_9UGGEpeVttEvlRDQ_2g _model_server_result.datetime_utc '2025-09-12 20:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":409}' # _entry.id 8H8P # _exptl.entry_id 8H8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H8P _cell.length_a 84.755 _cell.length_b 92.553 _cell.length_c 169.864 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 V N N ? 5 CA N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id CA _struct_conn.ptnr1_label_atom_id MG _struct_conn.ptnr1_label_comp_id MG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id MG _struct_conn.ptnr1_auth_seq_id 407 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id MA _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 510 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.054 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8H8P _atom_sites.fract_transf_matrix[1][1] 0.011799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO B 1 401 402 EDO EDO . F 2 EDO B 1 402 403 EDO EDO . G 2 EDO B 1 403 404 EDO EDO . H 2 EDO B 1 404 405 EDO EDO . I 2 EDO B 1 405 406 EDO EDO . J 2 EDO B 1 406 407 EDO EDO . K 2 EDO B 1 407 408 EDO EDO . L 3 NA B 1 408 501 NA NA . M 4 CL B 1 409 601 CL CL . N 2 EDO A 1 401 401 EDO EDO . O 2 EDO A 1 402 402 EDO EDO . P 2 EDO A 1 403 403 EDO EDO . Q 3 NA A 1 404 501 NA NA . R 3 NA A 1 405 502 NA NA . S 3 NA A 1 406 503 NA NA . T 4 CL A 1 407 601 CL CL . U 4 CL A 1 408 602 CL CL . V 5 MG A 1 409 701 MG MG . W 2 EDO C 1 401 401 EDO EDO . X 2 EDO C 1 402 402 EDO EDO . Y 2 EDO C 1 403 403 EDO EDO . Z 2 EDO C 1 404 404 EDO EDO . AA 2 EDO C 1 405 405 EDO EDO . BA 2 EDO C 1 406 406 EDO EDO . CA 5 MG C 1 407 501 MG MG . DA 4 CL C 1 408 601 CL CL . EA 2 EDO C 1 409 406 EDO EDO . FA 2 EDO D 1 401 401 EDO EDO . GA 2 EDO D 1 402 402 EDO EDO . HA 2 EDO D 1 403 403 EDO EDO . IA 2 EDO D 1 404 404 EDO EDO . JA 2 EDO D 1 405 405 EDO EDO . KA 6 HOH B 1 501 4 HOH HOH . KA 6 HOH B 2 502 14 HOH HOH . KA 6 HOH B 3 503 6 HOH HOH . KA 6 HOH B 4 504 47 HOH HOH . KA 6 HOH B 5 505 7 HOH HOH . KA 6 HOH B 6 506 20 HOH HOH . KA 6 HOH B 7 507 49 HOH HOH . KA 6 HOH B 8 508 28 HOH HOH . KA 6 HOH B 9 509 25 HOH HOH . KA 6 HOH B 10 510 3 HOH HOH . KA 6 HOH B 11 511 30 HOH HOH . KA 6 HOH B 12 512 29 HOH HOH . KA 6 HOH B 13 513 13 HOH HOH . KA 6 HOH B 14 514 37 HOH HOH . KA 6 HOH B 15 515 32 HOH HOH . KA 6 HOH B 16 516 46 HOH HOH . KA 6 HOH B 17 517 34 HOH HOH . KA 6 HOH B 18 518 51 HOH HOH . KA 6 HOH B 19 519 33 HOH HOH . LA 6 HOH A 1 501 16 HOH HOH . LA 6 HOH A 2 502 27 HOH HOH . LA 6 HOH A 3 503 5 HOH HOH . LA 6 HOH A 4 504 11 HOH HOH . LA 6 HOH A 5 505 12 HOH HOH . LA 6 HOH A 6 506 9 HOH HOH . LA 6 HOH A 7 507 19 HOH HOH . LA 6 HOH A 8 508 10 HOH HOH . LA 6 HOH A 9 509 39 HOH HOH . LA 6 HOH A 10 510 26 HOH HOH . LA 6 HOH A 11 511 41 HOH HOH . LA 6 HOH A 12 512 44 HOH HOH . LA 6 HOH A 13 513 38 HOH HOH . LA 6 HOH A 14 514 48 HOH HOH . MA 6 HOH C 1 501 15 HOH HOH . MA 6 HOH C 2 502 23 HOH HOH . MA 6 HOH C 3 503 21 HOH HOH . MA 6 HOH C 4 504 43 HOH HOH . MA 6 HOH C 5 505 42 HOH HOH . MA 6 HOH C 6 506 40 HOH HOH . MA 6 HOH C 7 507 45 HOH HOH . MA 6 HOH C 8 508 22 HOH HOH . MA 6 HOH C 9 509 36 HOH HOH . MA 6 HOH C 10 510 1 HOH HOH . NA 6 HOH D 1 501 24 HOH HOH . NA 6 HOH D 2 502 17 HOH HOH . NA 6 HOH D 3 503 2 HOH HOH . NA 6 HOH D 4 504 18 HOH HOH . NA 6 HOH D 5 505 31 HOH HOH . NA 6 HOH D 6 506 8 HOH HOH . NA 6 HOH D 7 507 35 HOH HOH . NA 6 HOH D 8 508 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 5 _atom_site.Cartn_x -16.241 _atom_site.Cartn_y -1.36 _atom_site.Cartn_z -79.968 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 409 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #