data_8H9C # _model_server_result.job_id jtPmuZ7NNKIjYDAD2leMjQ _model_server_result.datetime_utc '2024-10-11 08:25:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8H9C # _exptl.entry_id 8H9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.318 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8H9C _cell.length_a 92.18 _cell.length_b 92.18 _cell.length_c 120.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 40.226667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 222 A ARG 462 1_555 B C7 X5V . A X5V 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? metalc ? metalc1 A SG CYS 94 A CYS 334 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 A NE2 HIS 145 A HIS 385 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A ND1 HIS 271 A HIS 511 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 B O1 X5V . A X5V 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 B O7 X5V . A X5V 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C17 H16 N2 O8' _chem_comp.formula_weight 376.318 _chem_comp.id X5V _chem_comp.mon_nstd_flag n _chem_comp.name N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine _chem_comp.type 'l-peptide nh3 amino terminus' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 X5V doub 376 n y C1 C6 X5V sing 377 n y C2 C3 X5V sing 378 n y O1 C6 X5V sing 379 n n C6 C16 X5V doub 380 n y C3 C4 X5V doub 381 n y C16 C4 X5V sing 382 n y C16 O7 X5V sing 383 n n C4 C5 X5V sing 384 n n C5 O6 X5V doub 385 n n C5 N1 X5V sing 386 n n N1 C61 X5V sing 387 n n O2 C7 X5V doub 388 n n C61 C7 X5V sing 389 n n C61 C8 X5V sing 390 n n O5 C8 X5V sing 391 n n C8 C9 X5V sing 392 n n C9 C10 X5V sing 393 n n C10 C15 X5V doub 394 n y C10 C11 X5V sing 395 n y C15 C14 X5V sing 396 n y C11 C12 X5V doub 397 n y C14 C13 X5V doub 398 n y C12 C13 X5V sing 399 n y C13 N11 X5V sing 400 n n N11 O4 X5V doub 401 n n N11 O3 X5V doub 402 n n N1 H1 X5V sing 403 n n C1 H2 X5V sing 404 n n O1 H3 X5V sing 405 n n C2 H4 X5V sing 406 n n C3 H5 X5V sing 407 n n C8 H7 X5V sing 408 n n C9 H8 X5V sing 409 n n C9 H9 X5V sing 410 n n C11 H10 X5V sing 411 n n C12 H11 X5V sing 412 n n C14 H12 X5V sing 413 n n C15 H13 X5V sing 414 n n C61 H14 X5V sing 415 n n O5 H15 X5V sing 416 n n O7 H16 X5V sing 417 n n C7 O8 X5V sing 418 n n O8 H6 X5V sing 419 n n # _atom_sites.entry_id 8H9C _atom_sites.fract_transf_matrix[1][1] 0.010848 _atom_sites.fract_transf_matrix[1][2] 0.006263 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X5V A 1 701 462 X5V OBR . C 3 ZN A 1 702 1 ZN ZN . D 4 HOH A 1 801 94 HOH HOH . D 4 HOH A 2 802 203 HOH HOH . D 4 HOH A 3 803 34 HOH HOH . D 4 HOH A 4 804 64 HOH HOH . D 4 HOH A 5 805 133 HOH HOH . D 4 HOH A 6 806 27 HOH HOH . D 4 HOH A 7 807 84 HOH HOH . D 4 HOH A 8 808 68 HOH HOH . D 4 HOH A 9 809 58 HOH HOH . D 4 HOH A 10 810 155 HOH HOH . D 4 HOH A 11 811 11 HOH HOH . D 4 HOH A 12 812 33 HOH HOH . D 4 HOH A 13 813 42 HOH HOH . D 4 HOH A 14 814 18 HOH HOH . D 4 HOH A 15 815 31 HOH HOH . D 4 HOH A 16 816 3 HOH HOH . D 4 HOH A 17 817 173 HOH HOH . D 4 HOH A 18 818 112 HOH HOH . D 4 HOH A 19 819 144 HOH HOH . D 4 HOH A 20 820 2 HOH HOH . D 4 HOH A 21 821 59 HOH HOH . D 4 HOH A 22 822 7 HOH HOH . D 4 HOH A 23 823 17 HOH HOH . D 4 HOH A 24 824 98 HOH HOH . D 4 HOH A 25 825 151 HOH HOH . D 4 HOH A 26 826 131 HOH HOH . D 4 HOH A 27 827 35 HOH HOH . D 4 HOH A 28 828 115 HOH HOH . D 4 HOH A 29 829 67 HOH HOH . D 4 HOH A 30 830 63 HOH HOH . D 4 HOH A 31 831 158 HOH HOH . D 4 HOH A 32 832 30 HOH HOH . D 4 HOH A 33 833 25 HOH HOH . D 4 HOH A 34 834 5 HOH HOH . D 4 HOH A 35 835 166 HOH HOH . D 4 HOH A 36 836 47 HOH HOH . D 4 HOH A 37 837 53 HOH HOH . D 4 HOH A 38 838 6 HOH HOH . D 4 HOH A 39 839 10 HOH HOH . D 4 HOH A 40 840 79 HOH HOH . D 4 HOH A 41 841 21 HOH HOH . D 4 HOH A 42 842 1 HOH HOH . D 4 HOH A 43 843 178 HOH HOH . D 4 HOH A 44 844 198 HOH HOH . D 4 HOH A 45 845 180 HOH HOH . D 4 HOH A 46 846 70 HOH HOH . D 4 HOH A 47 847 92 HOH HOH . D 4 HOH A 48 848 138 HOH HOH . D 4 HOH A 49 849 48 HOH HOH . D 4 HOH A 50 850 57 HOH HOH . D 4 HOH A 51 851 13 HOH HOH . D 4 HOH A 52 852 9 HOH HOH . D 4 HOH A 53 853 56 HOH HOH . D 4 HOH A 54 854 78 HOH HOH . D 4 HOH A 55 855 43 HOH HOH . D 4 HOH A 56 856 72 HOH HOH . D 4 HOH A 57 857 8 HOH HOH . D 4 HOH A 58 858 176 HOH HOH . D 4 HOH A 59 859 119 HOH HOH . D 4 HOH A 60 860 60 HOH HOH . D 4 HOH A 61 861 23 HOH HOH . D 4 HOH A 62 862 71 HOH HOH . D 4 HOH A 63 863 12 HOH HOH . D 4 HOH A 64 864 82 HOH HOH . D 4 HOH A 65 865 22 HOH HOH . D 4 HOH A 66 866 117 HOH HOH . D 4 HOH A 67 867 26 HOH HOH . D 4 HOH A 68 868 44 HOH HOH . D 4 HOH A 69 869 142 HOH HOH . D 4 HOH A 70 870 41 HOH HOH . D 4 HOH A 71 871 73 HOH HOH . D 4 HOH A 72 872 39 HOH HOH . D 4 HOH A 73 873 167 HOH HOH . D 4 HOH A 74 874 15 HOH HOH . D 4 HOH A 75 875 141 HOH HOH . D 4 HOH A 76 876 170 HOH HOH . D 4 HOH A 77 877 102 HOH HOH . D 4 HOH A 78 878 89 HOH HOH . D 4 HOH A 79 879 76 HOH HOH . D 4 HOH A 80 880 96 HOH HOH . D 4 HOH A 81 881 45 HOH HOH . D 4 HOH A 82 882 100 HOH HOH . D 4 HOH A 83 883 90 HOH HOH . D 4 HOH A 84 884 196 HOH HOH . D 4 HOH A 85 885 28 HOH HOH . D 4 HOH A 86 886 197 HOH HOH . D 4 HOH A 87 887 24 HOH HOH . D 4 HOH A 88 888 113 HOH HOH . D 4 HOH A 89 889 164 HOH HOH . D 4 HOH A 90 890 66 HOH HOH . D 4 HOH A 91 891 110 HOH HOH . D 4 HOH A 92 892 97 HOH HOH . D 4 HOH A 93 893 159 HOH HOH . D 4 HOH A 94 894 74 HOH HOH . D 4 HOH A 95 895 19 HOH HOH . D 4 HOH A 96 896 49 HOH HOH . D 4 HOH A 97 897 20 HOH HOH . D 4 HOH A 98 898 126 HOH HOH . D 4 HOH A 99 899 105 HOH HOH . D 4 HOH A 100 900 50 HOH HOH . D 4 HOH A 101 901 181 HOH HOH . D 4 HOH A 102 902 118 HOH HOH . D 4 HOH A 103 903 46 HOH HOH . D 4 HOH A 104 904 134 HOH HOH . D 4 HOH A 105 905 16 HOH HOH . D 4 HOH A 106 906 129 HOH HOH . D 4 HOH A 107 907 121 HOH HOH . D 4 HOH A 108 908 40 HOH HOH . D 4 HOH A 109 909 75 HOH HOH . D 4 HOH A 110 910 137 HOH HOH . D 4 HOH A 111 911 55 HOH HOH . D 4 HOH A 112 912 37 HOH HOH . D 4 HOH A 113 913 145 HOH HOH . D 4 HOH A 114 914 146 HOH HOH . D 4 HOH A 115 915 147 HOH HOH . D 4 HOH A 116 916 135 HOH HOH . D 4 HOH A 117 917 83 HOH HOH . D 4 HOH A 118 918 157 HOH HOH . D 4 HOH A 119 919 109 HOH HOH . D 4 HOH A 120 920 91 HOH HOH . D 4 HOH A 121 921 14 HOH HOH . D 4 HOH A 122 922 29 HOH HOH . D 4 HOH A 123 923 69 HOH HOH . D 4 HOH A 124 924 122 HOH HOH . D 4 HOH A 125 925 65 HOH HOH . D 4 HOH A 126 926 182 HOH HOH . D 4 HOH A 127 927 192 HOH HOH . D 4 HOH A 128 928 116 HOH HOH . D 4 HOH A 129 929 195 HOH HOH . D 4 HOH A 130 930 152 HOH HOH . D 4 HOH A 131 931 177 HOH HOH . D 4 HOH A 132 932 154 HOH HOH . D 4 HOH A 133 933 38 HOH HOH . D 4 HOH A 134 934 168 HOH HOH . D 4 HOH A 135 935 54 HOH HOH . D 4 HOH A 136 936 80 HOH HOH . D 4 HOH A 137 937 88 HOH HOH . D 4 HOH A 138 938 81 HOH HOH . D 4 HOH A 139 939 174 HOH HOH . D 4 HOH A 140 940 202 HOH HOH . D 4 HOH A 141 941 120 HOH HOH . D 4 HOH A 142 942 125 HOH HOH . D 4 HOH A 143 943 172 HOH HOH . D 4 HOH A 144 944 188 HOH HOH . D 4 HOH A 145 945 179 HOH HOH . D 4 HOH A 146 946 62 HOH HOH . D 4 HOH A 147 947 183 HOH HOH . D 4 HOH A 148 948 175 HOH HOH . D 4 HOH A 149 949 200 HOH HOH . D 4 HOH A 150 950 107 HOH HOH . D 4 HOH A 151 951 148 HOH HOH . D 4 HOH A 152 952 130 HOH HOH . D 4 HOH A 153 953 190 HOH HOH . D 4 HOH A 154 954 156 HOH HOH . D 4 HOH A 155 955 199 HOH HOH . D 4 HOH A 156 956 191 HOH HOH . D 4 HOH A 157 957 194 HOH HOH . D 4 HOH A 158 958 4 HOH HOH . D 4 HOH A 159 959 136 HOH HOH . D 4 HOH A 160 960 153 HOH HOH . D 4 HOH A 161 961 127 HOH HOH . D 4 HOH A 162 962 108 HOH HOH . D 4 HOH A 163 963 104 HOH HOH . D 4 HOH A 164 964 171 HOH HOH . D 4 HOH A 165 965 52 HOH HOH . D 4 HOH A 166 966 36 HOH HOH . D 4 HOH A 167 967 124 HOH HOH . D 4 HOH A 168 968 99 HOH HOH . D 4 HOH A 169 969 169 HOH HOH . D 4 HOH A 170 970 165 HOH HOH . D 4 HOH A 171 971 163 HOH HOH . D 4 HOH A 172 972 149 HOH HOH . D 4 HOH A 173 973 185 HOH HOH . D 4 HOH A 174 974 101 HOH HOH . D 4 HOH A 175 975 161 HOH HOH . D 4 HOH A 176 976 93 HOH HOH . D 4 HOH A 177 977 85 HOH HOH . D 4 HOH A 178 978 189 HOH HOH . D 4 HOH A 179 979 123 HOH HOH . D 4 HOH A 180 980 150 HOH HOH . D 4 HOH A 181 981 87 HOH HOH . D 4 HOH A 182 982 186 HOH HOH . D 4 HOH A 183 983 77 HOH HOH . D 4 HOH A 184 984 160 HOH HOH . D 4 HOH A 185 985 201 HOH HOH . D 4 HOH A 186 986 193 HOH HOH . D 4 HOH A 187 987 162 HOH HOH . D 4 HOH A 188 988 184 HOH HOH . D 4 HOH A 189 989 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X5V . . . B 2 29.749 11.859 5.026 1 30.06 ? N1 X5V 701 A 1 HETATM 2 C C1 X5V . . . B 2 34.436 10.175 6.827 1 27.89 ? C1 X5V 701 A 1 HETATM 3 O O1 X5V . . . B 2 33.652 11.508 8.687 1 28.64 ? O1 X5V 701 A 1 HETATM 4 C C2 X5V . . . B 2 34.254 9.691 5.546 1 27.48 ? C2 X5V 701 A 1 HETATM 5 C C3 X5V . . . B 2 33.116 10.048 4.843 1 28 ? C3 X5V 701 A 1 HETATM 6 C C4 X5V . . . B 2 32.156 10.878 5.405 1 28.56 ? C4 X5V 701 A 1 HETATM 7 C C5 X5V . . . B 2 30.942 11.2 4.53 1 29.25 ? C5 X5V 701 A 1 HETATM 8 C C6 X5V . . . B 2 33.483 11.006 7.393 1 28.37 ? C6 X5V 701 A 1 HETATM 9 C C7 X5V . . . B 2 28.163 13.534 4.194 1 31.81 ? C7 X5V 701 A 1 HETATM 10 C C8 X5V . . . B 2 27.524 11.118 4.279 1 31.8 ? C8 X5V 701 A 1 HETATM 11 C C9 X5V . . . B 2 28.04 9.68 4.334 1 31.43 ? C9 X5V 701 A 1 HETATM 12 C C10 X5V . . . B 2 26.933 8.724 4.77 1 32.01 ? C10 X5V 701 A 1 HETATM 13 C C11 X5V . . . B 2 26.748 8.475 6.12 1 32.19 ? C11 X5V 701 A 1 HETATM 14 C C12 X5V . . . B 2 25.745 7.618 6.536 1 32.19 ? C12 X5V 701 A 1 HETATM 15 C C13 X5V . . . B 2 24.927 7.009 5.601 1 32.25 ? C13 X5V 701 A 1 HETATM 16 C C14 X5V . . . B 2 25.108 7.258 4.249 1 32.4 ? C14 X5V 701 A 1 HETATM 17 C C15 X5V . . . B 2 26.111 8.117 3.832 1 32.2 ? C15 X5V 701 A 1 HETATM 18 C C16 X5V . . . B 2 32.344 11.359 6.701 1 28.86 ? C16 X5V 701 A 1 HETATM 19 O O2 X5V . . . B 2 28.269 14.102 5.229 1 32.73 ? O2 X5V 701 A 1 HETATM 20 C C61 X5V . . . B 2 28.674 12.1 4.073 1 30.82 ? C61 X5V 701 A 1 HETATM 21 N N11 X5V . . . B 2 23.877 6.114 6.046 1 32.27 ? N11 X5V 701 A 1 HETATM 22 O O3 X5V . . . B 2 23.455 5.055 5.227 1 31.62 ? O3 X5V 701 A 1 HETATM 23 O O4 X5V . . . B 2 23.283 6.317 7.303 1 32.82 ? O4 X5V 701 A 1 HETATM 24 O O5 X5V . . . B 2 26.854 11.429 5.47 1 32.9 ? O5 X5V 701 A 1 HETATM 25 O O6 X5V . . . B 2 30.97 10.888 3.387 1 29.28 ? O6 X5V 701 A 1 HETATM 26 O O7 X5V . . . B 2 31.449 12.216 7.367 1 29.56 ? O7 X5V 701 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #