data_8H9O
#
_model_server_result.job_id            VCBOxrd4wrREZ_Ad46bRuw 
_model_server_result.datetime_utc      '2024-11-24 08:45:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h9o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1307}' 
#
_entry.id    8H9O 
#
_exptl.entry_id    8H9O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H9O 
_cell.length_a            127.83 
_cell.length_b            127.83 
_cell.length_c            200.91 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H9O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 451 n n 
O1 H1P PX4 sing 452 n n 
O2 P1 PX4 doub 453 n n 
P1 O3 PX4 sing 454 n n 
P1 O4 PX4 sing 455 n n 
O3 C1 PX4 sing 456 n n 
C1 C2 PX4 sing 457 n n 
C1 H1 PX4 sing 458 n n 
C1 H2 PX4 sing 459 n n 
C2 N1 PX4 sing 460 n n 
C2 H3 PX4 sing 461 n n 
C2 H4 PX4 sing 462 n n 
N1 C3 PX4 sing 463 n n 
N1 C4 PX4 sing 464 n n 
N1 C5 PX4 sing 465 n n 
C3 H5 PX4 sing 466 n n 
C3 H6 PX4 sing 467 n n 
C3 H7 PX4 sing 468 n n 
C4 H8 PX4 sing 469 n n 
C4 H9 PX4 sing 470 n n 
C4 H10 PX4 sing 471 n n 
C5 H11 PX4 sing 472 n n 
C5 H12 PX4 sing 473 n n 
C5 H13 PX4 sing 474 n n 
O4 C6 PX4 sing 475 n n 
C6 C7 PX4 sing 476 n n 
C6 H14 PX4 sing 477 n n 
C6 H15 PX4 sing 478 n n 
C7 C8 PX4 sing 479 n n 
C7 O7 PX4 sing 480 n n 
C7 H16 PX4 sing 481 n n 
C8 O5 PX4 sing 482 n n 
C8 H17 PX4 sing 483 n n 
C8 H18 PX4 sing 484 n n 
O5 C9 PX4 sing 485 n n 
C9 O6 PX4 doub 486 n n 
C9 C10 PX4 sing 487 n n 
C10 C11 PX4 sing 488 n n 
C10 H19 PX4 sing 489 n n 
C10 H20 PX4 sing 490 n n 
C11 C12 PX4 sing 491 n n 
C11 H21 PX4 sing 492 n n 
C11 H22 PX4 sing 493 n n 
C12 C13 PX4 sing 494 n n 
C12 H23 PX4 sing 495 n n 
C12 H24 PX4 sing 496 n n 
C13 C14 PX4 sing 497 n n 
C13 H25 PX4 sing 498 n n 
C13 H26 PX4 sing 499 n n 
C14 C15 PX4 sing 500 n n 
C14 H27 PX4 sing 501 n n 
C14 H28 PX4 sing 502 n n 
C15 C16 PX4 sing 503 n n 
C15 H29 PX4 sing 504 n n 
C15 H30 PX4 sing 505 n n 
C16 C17 PX4 sing 506 n n 
C16 H31 PX4 sing 507 n n 
C16 H32 PX4 sing 508 n n 
C17 C18 PX4 sing 509 n n 
C17 H33 PX4 sing 510 n n 
C17 H34 PX4 sing 511 n n 
C18 C19 PX4 sing 512 n n 
C18 H35 PX4 sing 513 n n 
C18 H36 PX4 sing 514 n n 
C19 C20 PX4 sing 515 n n 
C19 H37 PX4 sing 516 n n 
C19 H38 PX4 sing 517 n n 
C20 C21 PX4 sing 518 n n 
C20 H39 PX4 sing 519 n n 
C20 H40 PX4 sing 520 n n 
C21 C22 PX4 sing 521 n n 
C21 H41 PX4 sing 522 n n 
C21 H42 PX4 sing 523 n n 
C22 H43 PX4 sing 524 n n 
C22 H44 PX4 sing 525 n n 
C22 H45 PX4 sing 526 n n 
O7 C23 PX4 sing 527 n n 
C23 O8 PX4 doub 528 n n 
C23 C24 PX4 sing 529 n n 
C24 C25 PX4 sing 530 n n 
C24 H46 PX4 sing 531 n n 
C24 H47 PX4 sing 532 n n 
C25 C26 PX4 sing 533 n n 
C25 H48 PX4 sing 534 n n 
C25 H49 PX4 sing 535 n n 
C26 C27 PX4 sing 536 n n 
C26 H50 PX4 sing 537 n n 
C26 H51 PX4 sing 538 n n 
C27 C28 PX4 sing 539 n n 
C27 H52 PX4 sing 540 n n 
C27 H53 PX4 sing 541 n n 
C28 C29 PX4 sing 542 n n 
C28 H54 PX4 sing 543 n n 
C28 H55 PX4 sing 544 n n 
C29 C30 PX4 sing 545 n n 
C29 H56 PX4 sing 546 n n 
C29 H57 PX4 sing 547 n n 
C30 C31 PX4 sing 548 n n 
C30 H58 PX4 sing 549 n n 
C30 H59 PX4 sing 550 n n 
C31 C32 PX4 sing 551 n n 
C31 H60 PX4 sing 552 n n 
C31 H61 PX4 sing 553 n n 
C32 C33 PX4 sing 554 n n 
C32 H62 PX4 sing 555 n n 
C32 H63 PX4 sing 556 n n 
C33 C34 PX4 sing 557 n n 
C33 H64 PX4 sing 558 n n 
C33 H65 PX4 sing 559 n n 
C34 C35 PX4 sing 560 n n 
C34 H66 PX4 sing 561 n n 
C34 H67 PX4 sing 562 n n 
C35 C36 PX4 sing 563 n n 
C35 H68 PX4 sing 564 n n 
C35 H69 PX4 sing 565 n n 
C36 H70 PX4 sing 566 n n 
C36 H71 PX4 sing 567 n n 
C36 H72 PX4 sing 568 n n 
#
_atom_sites.entry_id                     8H9O 
_atom_sites.fract_transf_matrix[1][1]    0.007823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004977 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LMT A 1 1301 1301 LMT LMT . 
C 2 LMT A 1 1302 1303 LMT LMT . 
D 3 1N7 A 1 1303 1304 1N7 1N7 . 
E 4 PX4 A 1 1304 1305 PX4 PX4 . 
F 4 PX4 A 1 1305 1306 PX4 PX4 . 
G 4 PX4 A 1 1306 1 PX4 PX4 . 
H 4 PX4 A 1 1307 2 PX4 PX4 . 
I 4 PX4 A 1 1308 3 PX4 PX4 . 
J 4 PX4 A 1 1309 4 PX4 PX4 . 
K 4 PX4 A 1 1310 5 PX4 PX4 . 
L 4 PX4 A 1 1311 6 PX4 PX4 . 
M 4 PX4 A 1 1312 7 PX4 PX4 . 
N 5 NA A 1 1313 1 NA NA . 
O 6 HOH A 1 1401 1 HOH HOH . 
O 6 HOH A 2 1402 12 HOH HOH . 
O 6 HOH A 3 1403 13 HOH HOH . 
O 6 HOH A 4 1404 23 HOH HOH . 
O 6 HOH A 5 1405 4 HOH HOH . 
O 6 HOH A 6 1406 25 HOH HOH . 
O 6 HOH A 7 1407 5 HOH HOH . 
O 6 HOH A 8 1408 2 HOH HOH . 
O 6 HOH A 9 1409 3 HOH HOH . 
O 6 HOH A 10 1410 27 HOH HOH . 
O 6 HOH A 11 1411 29 HOH HOH . 
O 6 HOH A 12 1412 11 HOH HOH . 
O 6 HOH A 13 1413 30 HOH HOH . 
O 6 HOH A 14 1414 31 HOH HOH . 
O 6 HOH A 15 1416 10 HOH HOH . 
O 6 HOH A 16 1417 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . H 4 10.122 -28.395 5.205 1 187.02 ? O1 PX4 1307 A 1 
HETATM 2 O O2 PX4 . . . H 4 11.554 -26.953 6.848 1 172.43 ? O2 PX4 1307 A 1 
HETATM 3 P P1 PX4 . . . H 4 11.161 -28.318 6.308 1 196.44 ? P1 PX4 1307 A 1 
HETATM 4 O O3 PX4 . . . H 4 12.517 -29.03 5.795 1 195.12 ? O3 PX4 1307 A 1 
HETATM 5 C C1 PX4 . . . H 4 13.705 -28.266 5.566 1 190.28 ? C1 PX4 1307 A 1 
HETATM 6 C C2 PX4 . . . H 4 14.743 -29.133 4.855 1 195.46 ? C2 PX4 1307 A 1 
HETATM 7 N N1 PX4 . . . H 4 15.61 -29.857 5.804 1 205.61 ? N1 PX4 1307 A 1 
HETATM 8 C C3 PX4 . . . H 4 14.879 -30.915 6.521 1 204.19 ? C3 PX4 1307 A 1 
HETATM 9 C C4 PX4 . . . H 4 16.701 -30.477 5.039 1 206.48 ? C4 PX4 1307 A 1 
HETATM 10 C C5 PX4 . . . H 4 16.156 -28.899 6.778 1 205.3 ? C5 PX4 1307 A 1 
HETATM 11 O O4 PX4 . . . H 4 10.645 -29.266 7.528 1 179.38 ? O4 PX4 1307 A 1 
HETATM 12 C C6 PX4 . . . H 4 11.433 -29.496 8.707 1 169.6 ? C6 PX4 1307 A 1 
HETATM 13 C C7 PX4 . . . H 4 10.98 -28.591 9.862 1 159.01 ? C7 PX4 1307 A 1 
HETATM 14 C C8 PX4 . . . H 4 9.991 -29.304 10.814 1 146.22 ? C8 PX4 1307 A 1 
HETATM 15 O O5 PX4 . . . H 4 9.537 -28.31 11.747 1 140.38 ? O5 PX4 1307 A 1 
HETATM 16 C C9 PX4 . . . H 4 8.559 -28.415 12.848 1 142.19 ? C9 PX4 1307 A 1 
HETATM 17 O O6 PX4 . . . H 4 7.739 -29.329 12.834 1 150.67 ? O6 PX4 1307 A 1 
HETATM 18 C C10 PX4 . . . H 4 8.622 -27.333 13.95 1 128.36 ? C10 PX4 1307 A 1 
HETATM 19 C C11 PX4 . . . H 4 7.626 -27.297 15.134 1 122.2 ? C11 PX4 1307 A 1 
HETATM 20 C C12 PX4 . . . H 4 8.104 -26.288 16.201 1 103.75 ? C12 PX4 1307 A 1 
HETATM 21 C C13 PX4 . . . H 4 7.273 -26.213 17.491 1 103.53 ? C13 PX4 1307 A 1 
HETATM 22 C C14 PX4 . . . H 4 7.777 -25.186 18.53 1 101 ? C14 PX4 1307 A 1 
HETATM 23 C C15 PX4 . . . H 4 6.767 -24.968 19.679 1 114.22 ? C15 PX4 1307 A 1 
HETATM 24 C C16 PX4 . . . H 4 6.812 -23.59 20.37 1 116.31 ? C16 PX4 1307 A 1 
HETATM 25 C C17 PX4 . . . H 4 5.434 -22.901 20.518 1 112.54 ? C17 PX4 1307 A 1 
HETATM 26 C C18 PX4 . . . H 4 5.454 -21.503 21.188 1 113.6 ? C18 PX4 1307 A 1 
HETATM 27 C C19 PX4 . . . H 4 4.16 -20.667 21.04 1 100.52 ? C19 PX4 1307 A 1 
HETATM 28 C C20 PX4 . . . H 4 3.753 -19.856 22.288 1 94.54 ? C20 PX4 1307 A 1 
HETATM 29 C C21 PX4 . . . H 4 4.894 -19.025 22.909 1 92.85 ? C21 PX4 1307 A 1 
HETATM 30 C C22 PX4 . . . H 4 4.597 -18.425 24.282 1 87.98 ? C22 PX4 1307 A 1 
HETATM 31 O O7 PX4 . . . H 4 12.117 -28.051 10.588 1 163.33 ? O7 PX4 1307 A 1 
HETATM 32 C C23 PX4 . . . H 4 12.601 -26.702 10.2 1 151.95 ? C23 PX4 1307 A 1 
HETATM 33 O O8 PX4 . . . H 4 13.385 -26.567 9.253 1 150.56 ? O8 PX4 1307 A 1 
HETATM 34 C C24 PX4 . . . H 4 12.103 -25.458 10.935 1 129.94 ? C24 PX4 1307 A 1 
HETATM 35 C C25 PX4 . . . H 4 12.941 -25.031 12.14 1 117.85 ? C25 PX4 1307 A 1 
HETATM 36 C C26 PX4 . . . H 4 12.678 -25.925 13.354 1 118.93 ? C26 PX4 1307 A 1 
HETATM 37 C C27 PX4 . . . H 4 11.929 -25.274 14.521 1 109 ? C27 PX4 1307 A 1 
HETATM 38 C C28 PX4 . . . H 4 12.59 -25.581 15.873 1 109.05 ? C28 PX4 1307 A 1 
HETATM 39 C C29 PX4 . . . H 4 11.654 -25.366 17.064 1 107.94 ? C29 PX4 1307 A 1 
HETATM 40 C C30 PX4 . . . H 4 12.338 -24.714 18.271 1 100.33 ? C30 PX4 1307 A 1 
HETATM 41 C C31 PX4 . . . H 4 11.375 -24.652 19.465 1 113.26 ? C31 PX4 1307 A 1 
HETATM 42 C C32 PX4 . . . H 4 11.327 -23.286 20.174 1 115.13 ? C32 PX4 1307 A 1 
HETATM 43 C C33 PX4 . . . H 4 10.439 -23.255 21.434 1 106.96 ? C33 PX4 1307 A 1 
HETATM 44 C C34 PX4 . . . H 4 10.422 -21.878 22.106 1 97.97 ? C34 PX4 1307 A 1 
HETATM 45 C C35 PX4 . . . H 4 9.91 -21.931 23.542 1 109.68 ? C35 PX4 1307 A 1 
HETATM 46 C C36 PX4 . . . H 4 10.556 -20.837 24.374 1 115.86 ? C36 PX4 1307 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           46 
#