data_8H9P
#
_model_server_result.job_id            R-IVbedEhx1kbNer-ySGIg 
_model_server_result.datetime_utc      '2025-07-03 15:08:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    8H9P 
#
_exptl.entry_id    8H9P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H9P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 K N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 J MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc2 I O3G ATP . A ATP 601 1_555 J MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc3 I O1B ATP . A ATP 601 1_555 J MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc4 I O3B ATP . A ATP 601 1_555 J MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc5 B OG1 THR 176 B THR 176 1_555 L MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc6 K O3G ATP . B ATP 601 1_555 L MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc7 K O1B ATP . B ATP 601 1_555 L MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc8 C OG1 THR 176 C THR 176 1_555 N MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc9 M O1G ATP . C ATP 601 1_555 N MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc10 M O1B ATP . C ATP 601 1_555 N MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc11 E OG1 THR 166 F THR 166 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc12 O O3B ADP . F ADP 501 1_555 P MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc13 Q O2A ADP . D ADP 501 1_555 R MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8H9P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 ATP A 1 601 551 ATP ATP . 
J 6 MG A 1 602 552 MG MG . 
K 5 ATP B 1 601 551 ATP ATP . 
L 6 MG B 1 602 552 MG MG . 
M 5 ATP C 1 601 551 ATP ATP . 
N 6 MG C 1 602 552 MG MG . 
O 7 ADP F 1 501 551 ADP ADP . 
P 6 MG F 1 502 552 MG MG . 
Q 7 ADP D 1 501 551 ADP ADP . 
R 6 MG D 1 502 552 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 5 205.836 209.494 234.995 1 59.23 ? PG ATP 601 C 1 
HETATM 2 O O1G ATP . . . M 5 205.319 210.612 235.849 1 59.23 ? O1G ATP 601 C 1 
HETATM 3 O O2G ATP . . . M 5 205.139 208.201 235.365 1 59.23 ? O2G ATP 601 C 1 
HETATM 4 O O3G ATP . . . M 5 207.327 209.346 235.219 1 59.23 ? O3G ATP 601 C 1 
HETATM 5 P PB ATP . . . M 5 204.913 211.189 232.783 1 59.23 ? PB ATP 601 C 1 
HETATM 6 O O1B ATP . . . M 5 204.907 212.269 233.818 1 59.23 ? O1B ATP 601 C 1 
HETATM 7 O O2B ATP . . . M 5 203.517 210.92 232.317 1 59.23 ? O2B ATP 601 C 1 
HETATM 8 O O3B ATP . . . M 5 205.56 209.806 233.397 1 59.23 ? O3B ATP 601 C 1 
HETATM 9 P PA ATP . . . M 5 207.049 212.796 231.614 1 59.23 ? PA ATP 601 C 1 
HETATM 10 O O1A ATP . . . M 5 206.585 214.122 231.07 1 59.23 ? O1A ATP 601 C 1 
HETATM 11 O O2A ATP . . . M 5 207.445 212.97 233.057 1 59.23 ? O2A ATP 601 C 1 
HETATM 12 O O3A ATP . . . M 5 205.834 211.677 231.49 1 59.23 ? O3A ATP 601 C 1 
HETATM 13 O O5' ATP . . . M 5 208.354 212.278 230.762 1 59.23 ? O5' ATP 601 C 1 
HETATM 14 C C5' ATP . . . M 5 208.141 211.495 229.59 1 59.23 ? C5' ATP 601 C 1 
HETATM 15 C C4' ATP . . . M 5 209.344 211.6 228.719 1 59.23 ? C4' ATP 601 C 1 
HETATM 16 O O4' ATP . . . M 5 208.903 211.96 227.331 1 59.23 ? O4' ATP 601 C 1 
HETATM 17 C C3' ATP . . . M 5 210.221 212.682 229.215 1 59.23 ? C3' ATP 601 C 1 
HETATM 18 O O3' ATP . . . M 5 211.627 212.288 229.074 1 59.23 ? O3' ATP 601 C 1 
HETATM 19 C C2' ATP . . . M 5 209.966 213.834 228.383 1 59.23 ? C2' ATP 601 C 1 
HETATM 20 O O2' ATP . . . M 5 211.192 214.614 228.245 1 59.23 ? O2' ATP 601 C 1 
HETATM 21 C C1' ATP . . . M 5 209.549 213.303 227.08 1 59.23 ? C1' ATP 601 C 1 
HETATM 22 N N9 ATP . . . M 5 208.608 214.173 226.492 1 59.23 ? N9 ATP 601 C 1 
HETATM 23 C C8 ATP . . . M 5 207.504 214.456 227.047 1 59.23 ? C8 ATP 601 C 1 
HETATM 24 N N7 ATP . . . M 5 206.848 215.291 226.251 1 59.23 ? N7 ATP 601 C 1 
HETATM 25 C C5 ATP . . . M 5 207.631 215.509 225.149 1 59.23 ? C5 ATP 601 C 1 
HETATM 26 C C6 ATP . . . M 5 207.539 216.251 223.984 1 59.23 ? C6 ATP 601 C 1 
HETATM 27 N N6 ATP . . . M 5 206.353 217.063 223.724 1 59.23 ? N6 ATP 601 C 1 
HETATM 28 N N1 ATP . . . M 5 208.52 216.216 223.121 1 59.23 ? N1 ATP 601 C 1 
HETATM 29 C C2 ATP . . . M 5 209.606 215.48 223.345 1 59.23 ? C2 ATP 601 C 1 
HETATM 30 N N3 ATP . . . M 5 209.75 214.755 224.435 1 59.23 ? N3 ATP 601 C 1 
HETATM 31 C C4 ATP . . . M 5 208.802 214.736 225.353 1 59.23 ? C4 ATP 601 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#