data_8H9S
#
_model_server_result.job_id            6QN9CbmGp9khsKCkTIQPzw 
_model_server_result.datetime_utc      '2025-07-30 17:49:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":501}' 
#
_entry.id    8H9S 
#
_exptl.entry_id    8H9S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H9S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 21 JA N N 
? 21 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OG1 THR 176 A THR 176 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc2 DA O3G ATP . A ATP 601 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc3 DA O1B ATP . A ATP 601 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc4 E OG1 THR 176 B THR 176 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc5 FA O3G ATP . B ATP 601 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 FA O1B ATP . B ATP 601 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc7 F OG1 THR 176 C THR 176 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc8 HA O1G ATP . C ATP 601 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc9 HA O1B ATP . C ATP 601 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc10 H OG1 THR 166 F THR 166 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc11 JA O3B ADP . F ADP 501 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc12 I OG1 THR 166 D THR 166 1_555 MA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc13 LA O1B ADP . D ADP 501 1_555 MA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 125 n n 
PB O2B ADP sing 126 n n 
PB O3B ADP sing 127 n n 
PB O3A ADP sing 128 n n 
O2B HOB2 ADP sing 129 n n 
O3B HOB3 ADP sing 130 n n 
PA O1A ADP doub 131 n n 
PA O2A ADP sing 132 n n 
PA O3A ADP sing 133 n n 
PA O5' ADP sing 134 n n 
O2A HOA2 ADP sing 135 n n 
O5' C5' ADP sing 136 n n 
C5' C4' ADP sing 137 n n 
C5' "H5'1" ADP sing 138 n n 
C5' "H5'2" ADP sing 139 n n 
C4' O4' ADP sing 140 n n 
C4' C3' ADP sing 141 n n 
C4' H4' ADP sing 142 n n 
O4' C1' ADP sing 143 n n 
C3' O3' ADP sing 144 n n 
C3' C2' ADP sing 145 n n 
C3' H3' ADP sing 146 n n 
O3' HO3' ADP sing 147 n n 
C2' O2' ADP sing 148 n n 
C2' C1' ADP sing 149 n n 
C2' H2' ADP sing 150 n n 
O2' HO2' ADP sing 151 n n 
C1' N9 ADP sing 152 n n 
C1' H1' ADP sing 153 n n 
N9 C8 ADP sing 154 n y 
N9 C4 ADP sing 155 n y 
C8 N7 ADP doub 156 n y 
C8 H8 ADP sing 157 n n 
N7 C5 ADP sing 158 n y 
C5 C6 ADP sing 159 n y 
C5 C4 ADP doub 160 n y 
C6 N6 ADP sing 161 n n 
C6 N1 ADP doub 162 n y 
N6 HN61 ADP sing 163 n n 
N6 HN62 ADP sing 164 n n 
N1 C2 ADP sing 165 n y 
C2 N3 ADP doub 166 n y 
C2 H2 ADP sing 167 n n 
N3 C4 ADP sing 168 n y 
#
_atom_sites.entry_id                     8H9S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 18 CDL K 1 301 551 CDL CDL . 
DA 19 ATP A 1 601 551 ATP ATP . 
EA 20 MG A 1 602 552 MG MG . 
FA 19 ATP B 1 601 551 ATP ATP . 
GA 20 MG B 1 602 552 MG MG . 
HA 19 ATP C 1 601 551 ATP ATP . 
IA 20 MG C 1 602 552 MG MG . 
JA 21 ADP F 1 501 551 ADP ADP . 
KA 20 MG F 1 502 552 MG MG . 
LA 21 ADP D 1 501 551 ADP ADP . 
MA 20 MG D 1 502 552 MG MG . 
NA 22 3PH Q 1 101 552 3PH 3PH . 
OA 18 CDL R 1 101 553 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . JA 21 187.662 212.802 142.961 1 10.64 ? PB ADP 501 F 1 
HETATM 2 O O1B ADP . . . JA 21 186.904 212.204 141.825 1 10.64 ? O1B ADP 501 F 1 
HETATM 3 O O2B ADP . . . JA 21 188.34 211.689 143.758 1 10.64 ? O2B ADP 501 F 1 
HETATM 4 O O3B ADP . . . JA 21 188.698 213.742 142.432 1 10.64 ? O3B ADP 501 F 1 
HETATM 5 P PA ADP . . . JA 21 186.863 215.175 144.46 1 10.64 ? PA ADP 501 F 1 
HETATM 6 O O1A ADP . . . JA 21 186.507 216.161 143.33 1 10.64 ? O1A ADP 501 F 1 
HETATM 7 O O2A ADP . . . JA 21 188.33 215.401 144.896 1 10.64 ? O2A ADP 501 F 1 
HETATM 8 O O3A ADP . . . JA 21 186.641 213.619 143.941 1 10.64 ? O3A ADP 501 F 1 
HETATM 9 O O5' ADP . . . JA 21 185.852 215.433 145.77 1 10.64 ? O5' ADP 501 F 1 
HETATM 10 C C5' ADP . . . JA 21 184.708 214.605 145.877 1 10.64 ? C5' ADP 501 F 1 
HETATM 11 C C4' ADP . . . JA 21 183.995 214.912 147.123 1 10.64 ? C4' ADP 501 F 1 
HETATM 12 O O4' ADP . . . JA 21 184.597 214.111 148.269 1 10.64 ? O4' ADP 501 F 1 
HETATM 13 C C3' ADP . . . JA 21 184.153 216.316 147.485 1 10.64 ? C3' ADP 501 F 1 
HETATM 14 O O3' ADP . . . JA 21 183.12 217.132 146.861 1 10.64 ? O3' ADP 501 F 1 
HETATM 15 C C2' ADP . . . JA 21 183.971 216.326 148.924 1 10.64 ? C2' ADP 501 F 1 
HETATM 16 O O2' ADP . . . JA 21 182.547 216.285 149.215 1 10.64 ? O2' ADP 501 F 1 
HETATM 17 C C1' ADP . . . JA 21 184.583 215.082 149.408 1 10.64 ? C1' ADP 501 F 1 
HETATM 18 N N9 ADP . . . JA 21 185.934 215.356 149.819 1 10.64 ? N9 ADP 501 F 1 
HETATM 19 C C8 ADP . . . JA 21 186.949 215.024 149.114 1 10.64 ? C8 ADP 501 F 1 
HETATM 20 N N7 ADP . . . JA 21 188.05 215.421 149.769 1 10.64 ? N7 ADP 501 F 1 
HETATM 21 C C5 ADP . . . JA 21 187.65 216.022 150.919 1 10.64 ? C5 ADP 501 F 1 
HETATM 22 C C6 ADP . . . JA 21 188.253 216.613 151.975 1 10.64 ? C6 ADP 501 F 1 
HETATM 23 N N6 ADP . . . JA 21 189.749 216.708 152.035 1 10.64 ? N6 ADP 501 F 1 
HETATM 24 N N1 ADP . . . JA 21 187.502 217.106 152.96 1 10.64 ? N1 ADP 501 F 1 
HETATM 25 C C2 ADP . . . JA 21 186.157 217.028 152.922 1 10.64 ? C2 ADP 501 F 1 
HETATM 26 N N3 ADP . . . JA 21 185.525 216.471 151.931 1 10.64 ? N3 ADP 501 F 1 
HETATM 27 C C4 ADP . . . JA 21 186.202 215.956 150.91 1 10.64 ? C4 ADP 501 F 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#