data_8H9S
#
_model_server_result.job_id            HeFHpj_Hofk2D-Kz8uF14g 
_model_server_result.datetime_utc      '2025-07-30 17:46:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":601}' 
#
_entry.id    8H9S 
#
_exptl.entry_id    8H9S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          19 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H9S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 19 DA N N 
? 19 FA N N 
? 19 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OG1 THR 176 A THR 176 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc2 DA O3G ATP . A ATP 601 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc3 DA O1B ATP . A ATP 601 1_555 EA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc4 E OG1 THR 176 B THR 176 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc5 FA O3G ATP . B ATP 601 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 FA O1B ATP . B ATP 601 1_555 GA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc7 F OG1 THR 176 C THR 176 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc8 HA O1G ATP . C ATP 601 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc9 HA O1B ATP . C ATP 601 1_555 IA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc10 H OG1 THR 166 F THR 166 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc11 JA O3B ADP . F ADP 501 1_555 KA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc12 I OG1 THR 166 D THR 166 1_555 MA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc13 LA O1B ADP . D ADP 501 1_555 MA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 238 n n 
PG O2G ATP sing 239 n n 
PG O3G ATP sing 240 n n 
PG O3B ATP sing 241 n n 
O2G HOG2 ATP sing 242 n n 
O3G HOG3 ATP sing 243 n n 
PB O1B ATP doub 244 n n 
PB O2B ATP sing 245 n n 
PB O3B ATP sing 246 n n 
PB O3A ATP sing 247 n n 
O2B HOB2 ATP sing 248 n n 
PA O1A ATP doub 249 n n 
PA O2A ATP sing 250 n n 
PA O3A ATP sing 251 n n 
PA O5' ATP sing 252 n n 
O2A HOA2 ATP sing 253 n n 
O5' C5' ATP sing 254 n n 
C5' C4' ATP sing 255 n n 
C5' "H5'1" ATP sing 256 n n 
C5' "H5'2" ATP sing 257 n n 
C4' O4' ATP sing 258 n n 
C4' C3' ATP sing 259 n n 
C4' H4' ATP sing 260 n n 
O4' C1' ATP sing 261 n n 
C3' O3' ATP sing 262 n n 
C3' C2' ATP sing 263 n n 
C3' H3' ATP sing 264 n n 
O3' HO3' ATP sing 265 n n 
C2' O2' ATP sing 266 n n 
C2' C1' ATP sing 267 n n 
C2' H2' ATP sing 268 n n 
O2' HO2' ATP sing 269 n n 
C1' N9 ATP sing 270 n n 
C1' H1' ATP sing 271 n n 
N9 C8 ATP sing 272 n y 
N9 C4 ATP sing 273 n y 
C8 N7 ATP doub 274 n y 
C8 H8 ATP sing 275 n n 
N7 C5 ATP sing 276 n y 
C5 C6 ATP sing 277 n y 
C5 C4 ATP doub 278 n y 
C6 N6 ATP sing 279 n n 
C6 N1 ATP doub 280 n y 
N6 HN61 ATP sing 281 n n 
N6 HN62 ATP sing 282 n n 
N1 C2 ATP sing 283 n y 
C2 N3 ATP doub 284 n y 
C2 H2 ATP sing 285 n n 
N3 C4 ATP sing 286 n y 
#
_atom_sites.entry_id                     8H9S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 18 CDL K 1 301 551 CDL CDL . 
DA 19 ATP A 1 601 551 ATP ATP . 
EA 20 MG A 1 602 552 MG MG . 
FA 19 ATP B 1 601 551 ATP ATP . 
GA 20 MG B 1 602 552 MG MG . 
HA 19 ATP C 1 601 551 ATP ATP . 
IA 20 MG C 1 602 552 MG MG . 
JA 21 ADP F 1 501 551 ADP ADP . 
KA 20 MG F 1 502 552 MG MG . 
LA 21 ADP D 1 501 551 ADP ADP . 
MA 20 MG D 1 502 552 MG MG . 
NA 22 3PH Q 1 101 552 3PH 3PH . 
OA 18 CDL R 1 101 553 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . FA 19 161.735 203.065 138.519 1 14.08 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . FA 19 162.894 202.167 138.806 1 14.08 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . FA 19 160.554 202.249 138.045 1 14.08 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . FA 19 162.125 204.048 137.441 1 14.08 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . FA 19 162.06 205.307 140.313 1 14.08 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . FA 19 162.217 206.179 139.111 1 14.08 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . FA 19 163.394 205.013 140.912 1 14.08 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . FA 19 161.327 203.905 139.877 1 14.08 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . FA 19 159.571 206.543 141.308 1 14.08 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . FA 19 158.92 205.861 140.135 1 14.08 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . FA 19 159.48 208.032 141.118 1 14.08 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . FA 19 161.159 206.106 141.448 1 14.08 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . FA 19 158.824 206.131 142.712 1 14.08 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . FA 19 158.182 204.867 142.829 1 14.08 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . FA 19 156.948 205.074 143.631 1 14.08 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . FA 19 157.328 205.53 145.005 1 14.08 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . FA 19 156.152 206.158 143.025 1 14.08 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . FA 19 155.1 205.593 142.175 1 14.08 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . FA 19 155.546 206.894 144.11 1 14.08 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . FA 19 154.186 206.403 144.306 1 14.08 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . FA 19 156.326 206.62 145.323 1 14.08 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . FA 19 156.998 207.795 145.734 1 14.08 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . FA 19 158.022 208.24 145.134 1 14.08 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . FA 19 158.414 209.342 145.756 1 14.08 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . FA 19 157.555 209.559 146.801 1 14.08 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . FA 19 157.408 210.504 147.809 1 14.08 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . FA 19 158.34 211.624 147.914 1 14.08 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . FA 19 156.426 210.382 148.665 1 14.08 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . FA 19 155.567 209.368 148.584 1 14.08 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . FA 19 155.654 208.443 147.65 1 14.08 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . FA 19 156.618 208.493 146.747 1 14.08 ? C4 ATP 601 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#