data_8H9X
#
_model_server_result.job_id            Mz-5v6xf0kb9fIkhYbNnlQ 
_model_server_result.datetime_utc      '2024-10-27 18:25:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8h9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1311}' 
#
_entry.id    8H9X 
#
_exptl.entry_id    8H9X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8H9X 
_cell.length_a            127.28 
_cell.length_b            127.28 
_cell.length_c            202.76 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8H9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 451 n n 
O1 H1P PX4 sing 452 n n 
O2 P1 PX4 doub 453 n n 
P1 O3 PX4 sing 454 n n 
P1 O4 PX4 sing 455 n n 
O3 C1 PX4 sing 456 n n 
C1 C2 PX4 sing 457 n n 
C1 H1 PX4 sing 458 n n 
C1 H2 PX4 sing 459 n n 
C2 N1 PX4 sing 460 n n 
C2 H3 PX4 sing 461 n n 
C2 H4 PX4 sing 462 n n 
N1 C3 PX4 sing 463 n n 
N1 C4 PX4 sing 464 n n 
N1 C5 PX4 sing 465 n n 
C3 H5 PX4 sing 466 n n 
C3 H6 PX4 sing 467 n n 
C3 H7 PX4 sing 468 n n 
C4 H8 PX4 sing 469 n n 
C4 H9 PX4 sing 470 n n 
C4 H10 PX4 sing 471 n n 
C5 H11 PX4 sing 472 n n 
C5 H12 PX4 sing 473 n n 
C5 H13 PX4 sing 474 n n 
O4 C6 PX4 sing 475 n n 
C6 C7 PX4 sing 476 n n 
C6 H14 PX4 sing 477 n n 
C6 H15 PX4 sing 478 n n 
C7 C8 PX4 sing 479 n n 
C7 O7 PX4 sing 480 n n 
C7 H16 PX4 sing 481 n n 
C8 O5 PX4 sing 482 n n 
C8 H17 PX4 sing 483 n n 
C8 H18 PX4 sing 484 n n 
O5 C9 PX4 sing 485 n n 
C9 O6 PX4 doub 486 n n 
C9 C10 PX4 sing 487 n n 
C10 C11 PX4 sing 488 n n 
C10 H19 PX4 sing 489 n n 
C10 H20 PX4 sing 490 n n 
C11 C12 PX4 sing 491 n n 
C11 H21 PX4 sing 492 n n 
C11 H22 PX4 sing 493 n n 
C12 C13 PX4 sing 494 n n 
C12 H23 PX4 sing 495 n n 
C12 H24 PX4 sing 496 n n 
C13 C14 PX4 sing 497 n n 
C13 H25 PX4 sing 498 n n 
C13 H26 PX4 sing 499 n n 
C14 C15 PX4 sing 500 n n 
C14 H27 PX4 sing 501 n n 
C14 H28 PX4 sing 502 n n 
C15 C16 PX4 sing 503 n n 
C15 H29 PX4 sing 504 n n 
C15 H30 PX4 sing 505 n n 
C16 C17 PX4 sing 506 n n 
C16 H31 PX4 sing 507 n n 
C16 H32 PX4 sing 508 n n 
C17 C18 PX4 sing 509 n n 
C17 H33 PX4 sing 510 n n 
C17 H34 PX4 sing 511 n n 
C18 C19 PX4 sing 512 n n 
C18 H35 PX4 sing 513 n n 
C18 H36 PX4 sing 514 n n 
C19 C20 PX4 sing 515 n n 
C19 H37 PX4 sing 516 n n 
C19 H38 PX4 sing 517 n n 
C20 C21 PX4 sing 518 n n 
C20 H39 PX4 sing 519 n n 
C20 H40 PX4 sing 520 n n 
C21 C22 PX4 sing 521 n n 
C21 H41 PX4 sing 522 n n 
C21 H42 PX4 sing 523 n n 
C22 H43 PX4 sing 524 n n 
C22 H44 PX4 sing 525 n n 
C22 H45 PX4 sing 526 n n 
O7 C23 PX4 sing 527 n n 
C23 O8 PX4 doub 528 n n 
C23 C24 PX4 sing 529 n n 
C24 C25 PX4 sing 530 n n 
C24 H46 PX4 sing 531 n n 
C24 H47 PX4 sing 532 n n 
C25 C26 PX4 sing 533 n n 
C25 H48 PX4 sing 534 n n 
C25 H49 PX4 sing 535 n n 
C26 C27 PX4 sing 536 n n 
C26 H50 PX4 sing 537 n n 
C26 H51 PX4 sing 538 n n 
C27 C28 PX4 sing 539 n n 
C27 H52 PX4 sing 540 n n 
C27 H53 PX4 sing 541 n n 
C28 C29 PX4 sing 542 n n 
C28 H54 PX4 sing 543 n n 
C28 H55 PX4 sing 544 n n 
C29 C30 PX4 sing 545 n n 
C29 H56 PX4 sing 546 n n 
C29 H57 PX4 sing 547 n n 
C30 C31 PX4 sing 548 n n 
C30 H58 PX4 sing 549 n n 
C30 H59 PX4 sing 550 n n 
C31 C32 PX4 sing 551 n n 
C31 H60 PX4 sing 552 n n 
C31 H61 PX4 sing 553 n n 
C32 C33 PX4 sing 554 n n 
C32 H62 PX4 sing 555 n n 
C32 H63 PX4 sing 556 n n 
C33 C34 PX4 sing 557 n n 
C33 H64 PX4 sing 558 n n 
C33 H65 PX4 sing 559 n n 
C34 C35 PX4 sing 560 n n 
C34 H66 PX4 sing 561 n n 
C34 H67 PX4 sing 562 n n 
C35 C36 PX4 sing 563 n n 
C35 H68 PX4 sing 564 n n 
C35 H69 PX4 sing 565 n n 
C36 H70 PX4 sing 566 n n 
C36 H71 PX4 sing 567 n n 
C36 H72 PX4 sing 568 n n 
#
_atom_sites.entry_id                     8H9X 
_atom_sites.fract_transf_matrix[1][1]    0.007857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LMT A 1 1301 1301 LMT LMT . 
C 2 LMT A 1 1302 1303 LMT LMT . 
D 3 1N7 A 1 1303 1304 1N7 1N7 . 
E 4 PX4 A 1 1304 1305 PX4 PX4 . 
F 4 PX4 A 1 1305 1306 PX4 PX4 . 
G 4 PX4 A 1 1306 1 PX4 PX4 . 
H 4 PX4 A 1 1307 2 PX4 PX4 . 
I 4 PX4 A 1 1308 3 PX4 PX4 . 
J 4 PX4 A 1 1309 4 PX4 PX4 . 
K 4 PX4 A 1 1310 5 PX4 PX4 . 
L 4 PX4 A 1 1311 6 PX4 PX4 . 
M 5 NA A 1 1312 1 NA NA . 
N 5 NA A 1 1313 2 NA NA . 
O 6 HOH A 1 1401 28 HOH HOH . 
O 6 HOH A 2 1402 2 HOH HOH . 
O 6 HOH A 3 1403 4 HOH HOH . 
O 6 HOH A 4 1404 1 HOH HOH . 
O 6 HOH A 5 1405 25 HOH HOH . 
O 6 HOH A 6 1406 10 HOH HOH . 
O 6 HOH A 7 1407 3 HOH HOH . 
O 6 HOH A 8 1408 27 HOH HOH . 
O 6 HOH A 9 1409 12 HOH HOH . 
O 6 HOH A 10 1410 26 HOH HOH . 
O 6 HOH A 11 1411 5 HOH HOH . 
O 6 HOH A 12 1412 20 HOH HOH . 
O 6 HOH A 13 1413 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . L 4 32.529 -3.069 6.15 1 135.84 ? O1 PX4 1311 A 1 
HETATM 2 O O2 PX4 . . . L 4 30.131 -2.398 5.358 1 130.22 ? O2 PX4 1311 A 1 
HETATM 3 P P1 PX4 . . . L 4 31.636 -2.19 5.291 1 173.33 ? P1 PX4 1311 A 1 
HETATM 4 O O3 PX4 . . . L 4 32.118 -2.336 3.739 1 142.93 ? O3 PX4 1311 A 1 
HETATM 5 C C1 PX4 . . . L 4 32.792 -3.498 3.212 1 126.7 ? C1 PX4 1311 A 1 
HETATM 6 C C2 PX4 . . . L 4 33.265 -3.225 1.778 1 126.77 ? C2 PX4 1311 A 1 
HETATM 7 N N1 PX4 . . . L 4 34.399 -4.072 1.348 1 126.79 ? N1 PX4 1311 A 1 
HETATM 8 C C3 PX4 . . . L 4 34.022 -5.493 1.345 1 119.8 ? C3 PX4 1311 A 1 
HETATM 9 C C4 PX4 . . . L 4 34.779 -3.665 -0.014 1 116.06 ? C4 PX4 1311 A 1 
HETATM 10 C C5 PX4 . . . L 4 35.558 -3.881 2.235 1 109.23 ? C5 PX4 1311 A 1 
HETATM 11 O O4 PX4 . . . L 4 31.971 -0.631 5.651 1 156.46 ? O4 PX4 1311 A 1 
HETATM 12 C C6 PX4 . . . L 4 32.092 -0.151 7.008 1 134.79 ? C6 PX4 1311 A 1 
HETATM 13 C C7 PX4 . . . L 4 32.837 1.192 7.12 1 125.17 ? C7 PX4 1311 A 1 
HETATM 14 C C8 PX4 . . . L 4 31.845 2.329 7.427 1 122.39 ? C8 PX4 1311 A 1 
HETATM 15 O O5 PX4 . . . L 4 30.958 1.982 8.51 1 125.17 ? O5 PX4 1311 A 1 
HETATM 16 C C9 PX4 . . . L 4 29.982 2.939 9.043 1 114.71 ? C9 PX4 1311 A 1 
HETATM 17 O O6 PX4 . . . L 4 30.148 4.128 8.774 1 112.6 ? O6 PX4 1311 A 1 
HETATM 18 C C10 PX4 . . . L 4 28.793 2.478 9.888 1 91.92 ? C10 PX4 1311 A 1 
HETATM 19 C C11 PX4 . . . L 4 29.081 2.276 11.387 1 78.79 ? C11 PX4 1311 A 1 
HETATM 20 C C12 PX4 . . . L 4 27.901 2.692 12.287 1 71.44 ? C12 PX4 1311 A 1 
HETATM 21 C C13 PX4 . . . L 4 28.027 2.227 13.746 1 74.81 ? C13 PX4 1311 A 1 
HETATM 22 C C14 PX4 . . . L 4 26.911 2.68 14.711 1 72.79 ? C14 PX4 1311 A 1 
HETATM 23 C C15 PX4 . . . L 4 27.062 1.974 16.072 1 83.86 ? C15 PX4 1311 A 1 
HETATM 24 C C16 PX4 . . . L 4 26.297 2.581 17.259 1 79.83 ? C16 PX4 1311 A 1 
HETATM 25 C C17 PX4 . . . L 4 26.789 2.056 18.624 1 79.62 ? C17 PX4 1311 A 1 
HETATM 26 C C18 PX4 . . . L 4 28.277 2.352 18.901 1 79.22 ? C18 PX4 1311 A 1 
HETATM 27 C C19 PX4 . . . L 4 28.722 2.193 20.367 1 81.95 ? C19 PX4 1311 A 1 
HETATM 28 C C20 PX4 . . . L 4 30.252 2.249 20.501 1 82.14 ? C20 PX4 1311 A 1 
HETATM 29 C C21 PX4 . . . L 4 30.787 1.929 21.905 1 74.13 ? C21 PX4 1311 A 1 
HETATM 30 C C22 PX4 . . . L 4 32.306 1.863 21.951 1 74.55 ? C22 PX4 1311 A 1 
HETATM 31 O O7 PX4 . . . L 4 33.806 1.116 8.18 1 119.7 ? O7 PX4 1311 A 1 
HETATM 32 C C23 PX4 . . . L 4 35.159 0.66 7.834 1 117.62 ? C23 PX4 1311 A 1 
HETATM 33 O O8 PX4 . . . L 4 35.823 1.277 7.004 1 116.85 ? O8 PX4 1311 A 1 
HETATM 34 C C24 PX4 . . . L 4 35.741 -0.574 8.506 1 107.77 ? C24 PX4 1311 A 1 
HETATM 35 C C25 PX4 . . . L 4 35.315 -0.674 9.973 1 96.62 ? C25 PX4 1311 A 1 
HETATM 36 C C26 PX4 . . . L 4 33.894 -1.225 10.155 1 107.92 ? C26 PX4 1311 A 1 
HETATM 37 C C27 PX4 . . . L 4 33.078 -0.372 11.133 1 104.97 ? C27 PX4 1311 A 1 
HETATM 38 C C28 PX4 . . . L 4 31.633 -0.84 11.346 1 91.41 ? C28 PX4 1311 A 1 
HETATM 39 C C29 PX4 . . . L 4 31.451 -1.629 12.648 1 74.48 ? C29 PX4 1311 A 1 
HETATM 40 C C30 PX4 . . . L 4 30.654 -0.88 13.721 1 70.67 ? C30 PX4 1311 A 1 
HETATM 41 C C31 PX4 . . . L 4 30.662 -1.63 15.061 1 68.57 ? C31 PX4 1311 A 1 
HETATM 42 C C32 PX4 . . . L 4 30 -0.877 16.232 1 66.55 ? C32 PX4 1311 A 1 
HETATM 43 C C33 PX4 . . . L 4 30.277 -1.542 17.594 1 66.95 ? C33 PX4 1311 A 1 
HETATM 44 C C34 PX4 . . . L 4 29.557 -0.905 18.792 1 69.18 ? C34 PX4 1311 A 1 
HETATM 45 C C35 PX4 . . . L 4 29.843 -1.641 20.104 1 65.24 ? C35 PX4 1311 A 1 
HETATM 46 C C36 PX4 . . . L 4 28.98 -1.141 21.243 1 61.15 ? C36 PX4 1311 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#