data_8H9Y # _model_server_result.job_id iuufaBTGTsjegrxuCxJoaw _model_server_result.datetime_utc '2024-10-27 18:30:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8h9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 8H9Y # _exptl.entry_id 8H9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8H9Y _cell.length_a 127.94 _cell.length_b 127.94 _cell.length_c 201.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8H9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 179 A THR 1175 1_555 M CA CA . A CA 1312 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc2 A OE1 GLN 180 A GLN 1176 1_555 M CA CA . A CA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc3 B O6' LMT . A LMT 1301 1_555 M CA CA . A CA 1312 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 286 n n C1B O1B LMT sing 287 n n C1B O5B LMT sing 288 n n C1B H1B LMT sing 289 n n C2B C3B LMT sing 290 n n C2B O2B LMT sing 291 n n C2B H2B LMT sing 292 n n C3B C4B LMT sing 293 n n C3B O3B LMT sing 294 n n C3B H3B LMT sing 295 n n C4B C5B LMT sing 296 n n C4B O4' LMT sing 297 n n C4B H4B LMT sing 298 n n C5B C6B LMT sing 299 n n C5B O5B LMT sing 300 n n C5B H5B LMT sing 301 n n C6B O6B LMT sing 302 n n C6B "H6'2" LMT sing 303 n n C6B "H6'1" LMT sing 304 n n O1B C4' LMT sing 305 n n O2B H2O1 LMT sing 306 n n O3B H3O1 LMT sing 307 n n O4' H4O1 LMT sing 308 n n O6B H6B LMT sing 309 n n C1' C2' LMT sing 310 n n C1' O1' LMT sing 311 n n C1' O5' LMT sing 312 n n C1' H1' LMT sing 313 n n C2' C3' LMT sing 314 n n C2' O2' LMT sing 315 n n C2' H2' LMT sing 316 n n C3' C4' LMT sing 317 n n C3' O3' LMT sing 318 n n C3' H3' LMT sing 319 n n C4' C5' LMT sing 320 n n C4' H4' LMT sing 321 n n C5' C6' LMT sing 322 n n C5' O5' LMT sing 323 n n C5' H5' LMT sing 324 n n C6' O6' LMT sing 325 n n C6' H6D LMT sing 326 n n C6' H6E LMT sing 327 n n O1' C1 LMT sing 328 n n O2' H2O2 LMT sing 329 n n O3' H3O2 LMT sing 330 n n O6' H6' LMT sing 331 n n C1 C2 LMT sing 332 n n C1 H12 LMT sing 333 n n C1 H11 LMT sing 334 n n C2 C3 LMT sing 335 n n C2 H22 LMT sing 336 n n C2 H21 LMT sing 337 n n C3 C4 LMT sing 338 n n C3 H32 LMT sing 339 n n C3 H31 LMT sing 340 n n C4 C5 LMT sing 341 n n C4 H42 LMT sing 342 n n C4 H41 LMT sing 343 n n C5 C6 LMT sing 344 n n C5 H52 LMT sing 345 n n C5 H51 LMT sing 346 n n C6 C7 LMT sing 347 n n C6 H62 LMT sing 348 n n C6 H61 LMT sing 349 n n C7 C8 LMT sing 350 n n C7 H72 LMT sing 351 n n C7 H71 LMT sing 352 n n C8 C9 LMT sing 353 n n C8 H82 LMT sing 354 n n C8 H81 LMT sing 355 n n C9 C10 LMT sing 356 n n C9 H92 LMT sing 357 n n C9 H91 LMT sing 358 n n C10 C11 LMT sing 359 n n C10 H102 LMT sing 360 n n C10 H101 LMT sing 361 n n C11 C12 LMT sing 362 n n C11 H112 LMT sing 363 n n C11 H111 LMT sing 364 n n C12 H123 LMT sing 365 n n C12 H122 LMT sing 366 n n C12 H121 LMT sing 367 n n # _atom_sites.entry_id 8H9Y _atom_sites.fract_transf_matrix[1][1] 0.007816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMT A 1 1301 1301 LMT LMT . C 2 LMT A 1 1302 1302 LMT LMT . D 3 1N7 A 1 1303 1303 1N7 1N7 . E 4 PX4 A 1 1304 1304 PX4 PX4 . F 4 PX4 A 1 1305 1305 PX4 PX4 . G 4 PX4 A 1 1306 1306 PX4 PX4 . H 4 PX4 A 1 1307 1307 PX4 PX4 . I 4 PX4 A 1 1308 1308 PX4 PX4 . J 4 PX4 A 1 1309 1309 PX4 PX4 . K 4 PX4 A 1 1310 1310 PX4 PX4 . L 4 PX4 A 1 1311 1311 PX4 PX4 . M 5 CA A 1 1312 1312 CA CA . N 5 CA A 1 1313 1313 CA CA . O 6 HOH A 1 1401 1401 HOH HOH . O 6 HOH A 2 1402 1402 HOH HOH . O 6 HOH A 3 1403 1403 HOH HOH . O 6 HOH A 4 1404 1404 HOH HOH . O 6 HOH A 5 1405 1405 HOH HOH . O 6 HOH A 6 1406 1406 HOH HOH . O 6 HOH A 7 1407 1407 HOH HOH . O 6 HOH A 8 1408 1408 HOH HOH . O 6 HOH A 9 1409 1409 HOH HOH . O 6 HOH A 10 1410 1410 HOH HOH . O 6 HOH A 11 1411 1411 HOH HOH . O 6 HOH A 12 1412 1412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . B 2 -3.184 -3.421 26.526 1 70.04 ? C1B LMT 1301 A 1 HETATM 2 C C2B LMT . . . B 2 -3.237 -4.503 27.663 1 65.21 ? C2B LMT 1301 A 1 HETATM 3 C C3B LMT . . . B 2 -3.137 -3.856 29.074 1 66.9 ? C3B LMT 1301 A 1 HETATM 4 C C4B LMT . . . B 2 -3.136 -2.293 28.986 1 71.5 ? C4B LMT 1301 A 1 HETATM 5 C C5B LMT . . . B 2 -4.201 -1.795 27.951 1 70.55 ? C5B LMT 1301 A 1 HETATM 6 C C6B LMT . . . B 2 -3.928 -0.32 27.729 1 69.43 ? C6B LMT 1301 A 1 HETATM 7 O O1B LMT . . . B 2 -3.068 -4.01 25.232 1 68.32 ? O1B LMT 1301 A 1 HETATM 8 O O2B LMT . . . B 2 -4.432 -5.198 27.52 1 62.56 ? O2B LMT 1301 A 1 HETATM 9 O O3B LMT . . . B 2 -2.078 -4.374 29.832 1 61.9 ? O3B LMT 1301 A 1 HETATM 10 O O4' LMT . . . B 2 -3.326 -1.691 30.247 1 56.62 ? O4' LMT 1301 A 1 HETATM 11 O O5B LMT . . . B 2 -4.22 -2.478 26.679 1 69.61 ? O5B LMT 1301 A 1 HETATM 12 O O6B LMT . . . B 2 -2.554 -0.108 27.688 1 69.56 ? O6B LMT 1301 A 1 HETATM 13 C C1' LMT . . . B 2 -0.299 -7.128 24.219 1 53.99 ? C1' LMT 1301 A 1 HETATM 14 C C2' LMT . . . B 2 -1.567 -7.423 25.08 1 61.18 ? C2' LMT 1301 A 1 HETATM 15 C C3' LMT . . . B 2 -2.674 -6.394 24.775 1 63.68 ? C3' LMT 1301 A 1 HETATM 16 C C4' LMT . . . B 2 -2.067 -5.036 25.146 1 67.21 ? C4' LMT 1301 A 1 HETATM 17 C C5' LMT . . . B 2 -0.99 -4.843 24.027 1 60.24 ? C5' LMT 1301 A 1 HETATM 18 C C6' LMT . . . B 2 -0.427 -3.455 23.856 1 59.19 ? C6' LMT 1301 A 1 HETATM 19 O O1' LMT . . . B 2 0.748 -7.851 24.71 1 53.38 ? O1' LMT 1301 A 1 HETATM 20 O O2' LMT . . . B 2 -2.049 -8.666 24.799 1 58.38 ? O2' LMT 1301 A 1 HETATM 21 O O3' LMT . . . B 2 -3.816 -6.685 25.476 1 61.89 ? O3' LMT 1301 A 1 HETATM 22 O O5' LMT . . . B 2 0.088 -5.734 24.26 1 58.64 ? O5' LMT 1301 A 1 HETATM 23 O O6' LMT . . . B 2 -1.379 -2.741 23.197 1 55.5 ? O6' LMT 1301 A 1 HETATM 24 C C1 LMT . . . B 2 0.912 -9.118 24.13 1 43.43 ? C1 LMT 1301 A 1 HETATM 25 C C2 LMT . . . B 2 1.688 -9.887 25.145 1 43.37 ? C2 LMT 1301 A 1 HETATM 26 C C3 LMT . . . B 2 1.086 -11.173 25.588 1 44.24 ? C3 LMT 1301 A 1 HETATM 27 C C4 LMT . . . B 2 0.912 -11.078 27.07 1 49.51 ? C4 LMT 1301 A 1 HETATM 28 C C5 LMT . . . B 2 2.137 -11.588 27.752 1 49.19 ? C5 LMT 1301 A 1 HETATM 29 C C6 LMT . . . B 2 1.889 -11.92 29.19 1 52.83 ? C6 LMT 1301 A 1 HETATM 30 C C7 LMT . . . B 2 3.059 -12.686 29.745 1 49.24 ? C7 LMT 1301 A 1 HETATM 31 C C8 LMT . . . B 2 2.684 -14.126 29.915 1 51.59 ? C8 LMT 1301 A 1 HETATM 32 C C9 LMT . . . B 2 3.619 -15.097 29.253 1 49.84 ? C9 LMT 1301 A 1 HETATM 33 C C10 LMT . . . B 2 4.7 -15.477 30.239 1 47.85 ? C10 LMT 1301 A 1 HETATM 34 C C11 LMT . . . B 2 6.069 -15.079 29.763 1 43.52 ? C11 LMT 1301 A 1 HETATM 35 C C12 LMT . . . B 2 6.981 -16.241 29.61 1 41.23 ? C12 LMT 1301 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #