data_8HAP # _model_server_result.job_id dk84MG0OMB9Y6fSW8bP6SA _model_server_result.datetime_utc '2024-11-27 12:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8HAP # _exptl.entry_id 8HAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.64 _cell.angle_gamma 90 _cell.entry_id 8HAP _cell.length_a 164.075 _cell.length_b 75.356 _cell.length_c 105.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -59.857285 0 86.638608 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 256 A ASP 245 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc2 B OD1 ASP 256 B ASP 245 1_555 F NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HAP _atom_sites.fract_transf_matrix[1][1] 0.006095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA7 A 1 501 1 NA7 NAP . D 3 NA A 1 502 1 NA NA . E 4 ATR B 1 501 1 ATR NDP . F 3 NA B 1 502 2 NA NA . G 5 HOH A 1 601 132 HOH HOH . G 5 HOH A 2 602 250 HOH HOH . G 5 HOH A 3 603 23 HOH HOH . G 5 HOH A 4 604 82 HOH HOH . G 5 HOH A 5 605 265 HOH HOH . G 5 HOH A 6 606 63 HOH HOH . G 5 HOH A 7 607 74 HOH HOH . G 5 HOH A 8 608 46 HOH HOH . G 5 HOH A 9 609 267 HOH HOH . G 5 HOH A 10 610 103 HOH HOH . G 5 HOH A 11 611 85 HOH HOH . G 5 HOH A 12 612 146 HOH HOH . G 5 HOH A 13 613 68 HOH HOH . G 5 HOH A 14 614 36 HOH HOH . G 5 HOH A 15 615 8 HOH HOH . G 5 HOH A 16 616 185 HOH HOH . G 5 HOH A 17 617 135 HOH HOH . G 5 HOH A 18 618 16 HOH HOH . G 5 HOH A 19 619 221 HOH HOH . G 5 HOH A 20 620 169 HOH HOH . G 5 HOH A 21 621 170 HOH HOH . G 5 HOH A 22 622 253 HOH HOH . G 5 HOH A 23 623 54 HOH HOH . G 5 HOH A 24 624 97 HOH HOH . G 5 HOH A 25 625 93 HOH HOH . G 5 HOH A 26 626 72 HOH HOH . G 5 HOH A 27 627 62 HOH HOH . G 5 HOH A 28 628 205 HOH HOH . G 5 HOH A 29 629 157 HOH HOH . G 5 HOH A 30 630 248 HOH HOH . G 5 HOH A 31 631 166 HOH HOH . G 5 HOH A 32 632 150 HOH HOH . G 5 HOH A 33 633 263 HOH HOH . G 5 HOH A 34 634 187 HOH HOH . G 5 HOH A 35 635 139 HOH HOH . G 5 HOH A 36 636 110 HOH HOH . G 5 HOH A 37 637 141 HOH HOH . G 5 HOH A 38 638 58 HOH HOH . G 5 HOH A 39 639 178 HOH HOH . G 5 HOH A 40 640 124 HOH HOH . G 5 HOH A 41 641 27 HOH HOH . G 5 HOH A 42 642 261 HOH HOH . G 5 HOH A 43 643 29 HOH HOH . G 5 HOH A 44 644 73 HOH HOH . G 5 HOH A 45 645 5 HOH HOH . G 5 HOH A 46 646 34 HOH HOH . G 5 HOH A 47 647 252 HOH HOH . G 5 HOH A 48 648 208 HOH HOH . G 5 HOH A 49 649 59 HOH HOH . G 5 HOH A 50 650 119 HOH HOH . G 5 HOH A 51 651 87 HOH HOH . G 5 HOH A 52 652 94 HOH HOH . G 5 HOH A 53 653 134 HOH HOH . G 5 HOH A 54 654 193 HOH HOH . G 5 HOH A 55 655 65 HOH HOH . G 5 HOH A 56 656 188 HOH HOH . G 5 HOH A 57 657 197 HOH HOH . G 5 HOH A 58 658 83 HOH HOH . G 5 HOH A 59 659 211 HOH HOH . G 5 HOH A 60 660 213 HOH HOH . G 5 HOH A 61 661 88 HOH HOH . G 5 HOH A 62 662 98 HOH HOH . G 5 HOH A 63 663 37 HOH HOH . G 5 HOH A 64 664 215 HOH HOH . G 5 HOH A 65 665 91 HOH HOH . G 5 HOH A 66 666 14 HOH HOH . G 5 HOH A 67 667 227 HOH HOH . G 5 HOH A 68 668 145 HOH HOH . G 5 HOH A 69 669 52 HOH HOH . G 5 HOH A 70 670 200 HOH HOH . G 5 HOH A 71 671 71 HOH HOH . G 5 HOH A 72 672 40 HOH HOH . G 5 HOH A 73 673 108 HOH HOH . G 5 HOH A 74 674 38 HOH HOH . G 5 HOH A 75 675 259 HOH HOH . G 5 HOH A 76 676 20 HOH HOH . G 5 HOH A 77 677 114 HOH HOH . G 5 HOH A 78 678 77 HOH HOH . G 5 HOH A 79 679 181 HOH HOH . G 5 HOH A 80 680 207 HOH HOH . G 5 HOH A 81 681 203 HOH HOH . G 5 HOH A 82 682 101 HOH HOH . G 5 HOH A 83 683 255 HOH HOH . G 5 HOH A 84 684 164 HOH HOH . G 5 HOH A 85 685 214 HOH HOH . G 5 HOH A 86 686 95 HOH HOH . G 5 HOH A 87 687 100 HOH HOH . G 5 HOH A 88 688 13 HOH HOH . G 5 HOH A 89 689 128 HOH HOH . G 5 HOH A 90 690 258 HOH HOH . G 5 HOH A 91 691 28 HOH HOH . G 5 HOH A 92 692 120 HOH HOH . G 5 HOH A 93 693 99 HOH HOH . G 5 HOH A 94 694 44 HOH HOH . G 5 HOH A 95 695 223 HOH HOH . G 5 HOH A 96 696 140 HOH HOH . G 5 HOH A 97 697 226 HOH HOH . G 5 HOH A 98 698 106 HOH HOH . G 5 HOH A 99 699 48 HOH HOH . G 5 HOH A 100 700 31 HOH HOH . G 5 HOH A 101 701 260 HOH HOH . G 5 HOH A 102 702 121 HOH HOH . G 5 HOH A 103 703 89 HOH HOH . G 5 HOH A 104 704 198 HOH HOH . G 5 HOH A 105 705 149 HOH HOH . G 5 HOH A 106 706 4 HOH HOH . G 5 HOH A 107 707 155 HOH HOH . G 5 HOH A 108 708 229 HOH HOH . G 5 HOH A 109 709 70 HOH HOH . G 5 HOH A 110 710 173 HOH HOH . G 5 HOH A 111 711 1 HOH HOH . G 5 HOH A 112 712 202 HOH HOH . G 5 HOH A 113 713 116 HOH HOH . G 5 HOH A 114 714 160 HOH HOH . G 5 HOH A 115 715 158 HOH HOH . G 5 HOH A 116 716 2 HOH HOH . G 5 HOH A 117 717 41 HOH HOH . G 5 HOH A 118 718 220 HOH HOH . G 5 HOH A 119 719 78 HOH HOH . G 5 HOH A 120 720 165 HOH HOH . G 5 HOH A 121 721 236 HOH HOH . G 5 HOH A 122 722 218 HOH HOH . G 5 HOH A 123 723 204 HOH HOH . G 5 HOH A 124 724 247 HOH HOH . G 5 HOH A 125 725 251 HOH HOH . G 5 HOH A 126 726 245 HOH HOH . G 5 HOH A 127 727 142 HOH HOH . G 5 HOH A 128 728 249 HOH HOH . G 5 HOH A 129 729 105 HOH HOH . G 5 HOH A 130 730 151 HOH HOH . G 5 HOH A 131 731 264 HOH HOH . G 5 HOH A 132 732 266 HOH HOH . G 5 HOH A 133 733 241 HOH HOH . H 5 HOH B 1 601 86 HOH HOH . H 5 HOH B 2 602 243 HOH HOH . H 5 HOH B 3 603 19 HOH HOH . H 5 HOH B 4 604 161 HOH HOH . H 5 HOH B 5 605 6 HOH HOH . H 5 HOH B 6 606 137 HOH HOH . H 5 HOH B 7 607 176 HOH HOH . H 5 HOH B 8 608 118 HOH HOH . H 5 HOH B 9 609 61 HOH HOH . H 5 HOH B 10 610 244 HOH HOH . H 5 HOH B 11 611 212 HOH HOH . H 5 HOH B 12 612 133 HOH HOH . H 5 HOH B 13 613 81 HOH HOH . H 5 HOH B 14 614 136 HOH HOH . H 5 HOH B 15 615 242 HOH HOH . H 5 HOH B 16 616 117 HOH HOH . H 5 HOH B 17 617 125 HOH HOH . H 5 HOH B 18 618 109 HOH HOH . H 5 HOH B 19 619 90 HOH HOH . H 5 HOH B 20 620 190 HOH HOH . H 5 HOH B 21 621 174 HOH HOH . H 5 HOH B 22 622 66 HOH HOH . H 5 HOH B 23 623 21 HOH HOH . H 5 HOH B 24 624 209 HOH HOH . H 5 HOH B 25 625 64 HOH HOH . H 5 HOH B 26 626 219 HOH HOH . H 5 HOH B 27 627 30 HOH HOH . H 5 HOH B 28 628 183 HOH HOH . H 5 HOH B 29 629 32 HOH HOH . H 5 HOH B 30 630 75 HOH HOH . H 5 HOH B 31 631 225 HOH HOH . H 5 HOH B 32 632 84 HOH HOH . H 5 HOH B 33 633 12 HOH HOH . H 5 HOH B 34 634 111 HOH HOH . H 5 HOH B 35 635 129 HOH HOH . H 5 HOH B 36 636 177 HOH HOH . H 5 HOH B 37 637 233 HOH HOH . H 5 HOH B 38 638 127 HOH HOH . H 5 HOH B 39 639 217 HOH HOH . H 5 HOH B 40 640 163 HOH HOH . H 5 HOH B 41 641 17 HOH HOH . H 5 HOH B 42 642 10 HOH HOH . H 5 HOH B 43 643 246 HOH HOH . H 5 HOH B 44 644 131 HOH HOH . H 5 HOH B 45 645 182 HOH HOH . H 5 HOH B 46 646 238 HOH HOH . H 5 HOH B 47 647 126 HOH HOH . H 5 HOH B 48 648 42 HOH HOH . H 5 HOH B 49 649 196 HOH HOH . H 5 HOH B 50 650 240 HOH HOH . H 5 HOH B 51 651 143 HOH HOH . H 5 HOH B 52 652 104 HOH HOH . H 5 HOH B 53 653 195 HOH HOH . H 5 HOH B 54 654 22 HOH HOH . H 5 HOH B 55 655 224 HOH HOH . H 5 HOH B 56 656 162 HOH HOH . H 5 HOH B 57 657 102 HOH HOH . H 5 HOH B 58 658 80 HOH HOH . H 5 HOH B 59 659 189 HOH HOH . H 5 HOH B 60 660 138 HOH HOH . H 5 HOH B 61 661 33 HOH HOH . H 5 HOH B 62 662 180 HOH HOH . H 5 HOH B 63 663 179 HOH HOH . H 5 HOH B 64 664 76 HOH HOH . H 5 HOH B 65 665 107 HOH HOH . H 5 HOH B 66 666 9 HOH HOH . H 5 HOH B 67 667 55 HOH HOH . H 5 HOH B 68 668 60 HOH HOH . H 5 HOH B 69 669 144 HOH HOH . H 5 HOH B 70 670 172 HOH HOH . H 5 HOH B 71 671 230 HOH HOH . H 5 HOH B 72 672 231 HOH HOH . H 5 HOH B 73 673 192 HOH HOH . H 5 HOH B 74 674 51 HOH HOH . H 5 HOH B 75 675 92 HOH HOH . H 5 HOH B 76 676 257 HOH HOH . H 5 HOH B 77 677 194 HOH HOH . H 5 HOH B 78 678 199 HOH HOH . H 5 HOH B 79 679 96 HOH HOH . H 5 HOH B 80 680 57 HOH HOH . H 5 HOH B 81 681 234 HOH HOH . H 5 HOH B 82 682 167 HOH HOH . H 5 HOH B 83 683 24 HOH HOH . H 5 HOH B 84 684 168 HOH HOH . H 5 HOH B 85 685 49 HOH HOH . H 5 HOH B 86 686 47 HOH HOH . H 5 HOH B 87 687 67 HOH HOH . H 5 HOH B 88 688 3 HOH HOH . H 5 HOH B 89 689 79 HOH HOH . H 5 HOH B 90 690 237 HOH HOH . H 5 HOH B 91 691 15 HOH HOH . H 5 HOH B 92 692 112 HOH HOH . H 5 HOH B 93 693 171 HOH HOH . H 5 HOH B 94 694 147 HOH HOH . H 5 HOH B 95 695 26 HOH HOH . H 5 HOH B 96 696 232 HOH HOH . H 5 HOH B 97 697 56 HOH HOH . H 5 HOH B 98 698 18 HOH HOH . H 5 HOH B 99 699 201 HOH HOH . H 5 HOH B 100 700 69 HOH HOH . H 5 HOH B 101 701 191 HOH HOH . H 5 HOH B 102 702 113 HOH HOH . H 5 HOH B 103 703 216 HOH HOH . H 5 HOH B 104 704 115 HOH HOH . H 5 HOH B 105 705 210 HOH HOH . H 5 HOH B 106 706 228 HOH HOH . H 5 HOH B 107 707 130 HOH HOH . H 5 HOH B 108 708 235 HOH HOH . H 5 HOH B 109 709 43 HOH HOH . H 5 HOH B 110 710 184 HOH HOH . H 5 HOH B 111 711 35 HOH HOH . H 5 HOH B 112 712 7 HOH HOH . H 5 HOH B 113 713 122 HOH HOH . H 5 HOH B 114 714 222 HOH HOH . H 5 HOH B 115 715 186 HOH HOH . H 5 HOH B 116 716 239 HOH HOH . H 5 HOH B 117 717 262 HOH HOH . H 5 HOH B 118 718 25 HOH HOH . H 5 HOH B 119 719 123 HOH HOH . H 5 HOH B 120 720 254 HOH HOH . H 5 HOH B 121 721 39 HOH HOH . H 5 HOH B 122 722 50 HOH HOH . H 5 HOH B 123 723 154 HOH HOH . H 5 HOH B 124 724 256 HOH HOH . H 5 HOH B 125 725 159 HOH HOH . H 5 HOH B 126 726 148 HOH HOH . H 5 HOH B 127 727 152 HOH HOH . H 5 HOH B 128 728 11 HOH HOH . H 5 HOH B 129 729 175 HOH HOH . H 5 HOH B 130 730 153 HOH HOH . H 5 HOH B 131 731 53 HOH HOH . H 5 HOH B 132 732 45 HOH HOH . H 5 HOH B 133 733 206 HOH HOH . H 5 HOH B 134 734 156 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -37.825 _atom_site.Cartn_y -47.699 _atom_site.Cartn_z 15.249 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #