data_8HB0 # _model_server_result.job_id KQu4z3SxNvpqiALToZe_Nw _model_server_result.datetime_utc '2024-12-21 13:22:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8HB0 # _exptl.entry_id 8HB0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.465 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5S,6R)-2-[3-[(4-cyclopropylphenyl)methyl]-4-fluoranyl-indol-1-yl]-6-(hydroxymethyl)oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HB0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 259 A CYS 255 1_555 A SG CYS 515 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? disulf ? disulf2 A SG CYS 349 A CYS 345 1_555 A SG CYS 355 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? disulf ? disulf3 A SG CYS 359 A CYS 355 1_555 A SG CYS 365 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? disulf ? disulf4 A SG CYS 521 A CYS 517 1_555 A SG CYS 526 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc1 A O ALA 77 A ALA 73 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A O ILE 80 A ILE 76 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A O ALA 393 A ALA 389 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc4 A OG SER 396 A SER 392 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A OG SER 397 A SER 393 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C24 H26 F N O5' _chem_comp.formula_weight 427.465 _chem_comp.id KZ3 _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S,5S,6R)-2-[3-[(4-cyclopropylphenyl)methyl]-4-fluoranyl-indol-1-yl]-6-(hydroxymethyl)oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C2 KZ3 sing 173 n n O2 C3 KZ3 sing 174 n n C3 C2 KZ3 sing 175 n n C3 C4 KZ3 sing 176 n n C2 C1 KZ3 sing 177 n n O3 C4 KZ3 sing 178 n n C1 C6 KZ3 sing 179 n n C1 O1 KZ3 sing 180 n n C4 C5 KZ3 sing 181 n n C6 O5 KZ3 sing 182 n n C5 O1 KZ3 sing 183 n n C5 N1 KZ3 sing 184 n n N1 C9 KZ3 sing 185 n y N1 C7 KZ3 sing 186 n y C14 C9 KZ3 doub 187 n y C14 C13 KZ3 sing 188 n y C9 C10 KZ3 sing 189 n y C13 C12 KZ3 doub 190 n y C7 C8 KZ3 doub 191 n y C10 C8 KZ3 sing 192 n y C10 C11 KZ3 doub 193 n y C8 C15 KZ3 sing 194 n n C12 C11 KZ3 sing 195 n y C11 F1 KZ3 sing 196 n n C15 C16 KZ3 sing 197 n n C17 C16 KZ3 doub 198 n y C17 C18 KZ3 sing 199 n y C16 C21 KZ3 sing 200 n y C18 C19 KZ3 doub 201 n y C21 C20 KZ3 doub 202 n y C19 C20 KZ3 sing 203 n y C19 C22 KZ3 sing 204 n n C22 C24 KZ3 sing 205 n n C22 C23 KZ3 sing 206 n n C24 C23 KZ3 sing 207 n n C1 H1 KZ3 sing 208 n n C2 H2 KZ3 sing 209 n n C3 H3 KZ3 sing 210 n n C4 H4 KZ3 sing 211 n n C5 H5 KZ3 sing 212 n n C6 H6 KZ3 sing 213 n n C6 H7 KZ3 sing 214 n n C13 H8 KZ3 sing 215 n n C18 H9 KZ3 sing 216 n n C20 H10 KZ3 sing 217 n n C21 H11 KZ3 sing 218 n n C22 H12 KZ3 sing 219 n n C23 H13 KZ3 sing 220 n n C23 H14 KZ3 sing 221 n n O2 H15 KZ3 sing 222 n n O3 H16 KZ3 sing 223 n n O4 H17 KZ3 sing 224 n n C7 H18 KZ3 sing 225 n n C12 H19 KZ3 sing 226 n n C14 H20 KZ3 sing 227 n n O5 H21 KZ3 sing 228 n n C15 H22 KZ3 sing 229 n n C15 H23 KZ3 sing 230 n n C17 H24 KZ3 sing 231 n n C24 H25 KZ3 sing 232 n n C24 H26 KZ3 sing 233 n n # _atom_sites.entry_id 8HB0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 KZ3 A 1 802 901 KZ3 T18 . E 5 NA A 1 803 1 NA NA . F 6 HOH A 1 901 2 HOH HOH . F 6 HOH A 2 902 1 HOH HOH . F 6 HOH A 3 903 3 HOH HOH . F 6 HOH A 4 904 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KZ3 . . . D 4 65.311 68.597 71.469 1 34.45 ? C1 KZ3 802 A 1 HETATM 2 C C2 KZ3 . . . D 4 64.452 67.572 70.738 1 40.24 ? C2 KZ3 802 A 1 HETATM 3 C C3 KZ3 . . . D 4 65.291 66.366 70.347 1 36.24 ? C3 KZ3 802 A 1 HETATM 4 C C4 KZ3 . . . D 4 66.021 65.801 71.556 1 38.28 ? C4 KZ3 802 A 1 HETATM 5 C C5 KZ3 . . . D 4 66.819 66.926 72.207 1 42 ? C5 KZ3 802 A 1 HETATM 6 C C6 KZ3 . . . D 4 64.511 69.761 72.007 1 33.13 ? C6 KZ3 802 A 1 HETATM 7 C C8 KZ3 . . . D 4 67.86 65.346 75.335 1 54.96 ? C8 KZ3 802 A 1 HETATM 8 C C9 KZ3 . . . D 4 68.619 67.015 73.967 1 49.69 ? C9 KZ3 802 A 1 HETATM 9 C C13 KZ3 . . . D 4 70.561 68.343 74.271 1 75.69 ? C13 KZ3 802 A 1 HETATM 10 C C18 KZ3 . . . D 4 65.575 66.351 78.863 1 51.27 ? C18 KZ3 802 A 1 HETATM 11 C C19 KZ3 . . . D 4 66.143 66.089 80.101 1 50.22 ? C19 KZ3 802 A 1 HETATM 12 C C20 KZ3 . . . D 4 67.255 65.26 80.135 1 47.78 ? C20 KZ3 802 A 1 HETATM 13 C C21 KZ3 . . . D 4 67.774 64.716 78.976 1 53.81 ? C21 KZ3 802 A 1 HETATM 14 C C22 KZ3 . . . D 4 65.579 66.678 81.35 1 48.7 ? C22 KZ3 802 A 1 HETATM 15 C C23 KZ3 . . . D 4 64.112 66.844 81.574 1 50.6 ? C23 KZ3 802 A 1 HETATM 16 O O1 KZ3 . . . D 4 65.948 67.972 72.587 1 33.22 ? O1 KZ3 802 A 1 HETATM 17 N N1 KZ3 . . . D 4 67.458 66.49 73.437 1 44.3 ? N1 KZ3 802 A 1 HETATM 18 O O2 KZ3 . . . D 4 64.465 65.36 69.758 1 42.6 ? O2 KZ3 802 A 1 HETATM 19 O O3 KZ3 . . . D 4 66.914 64.764 71.149 1 43.85 ? O3 KZ3 802 A 1 HETATM 20 O O4 KZ3 . . . D 4 63.892 68.178 69.576 1 37.69 ? O4 KZ3 802 A 1 HETATM 21 C C7 KZ3 . . . D 4 67.006 65.477 74.277 1 52.18 ? C7 KZ3 802 A 1 HETATM 22 C C10 KZ3 . . . D 4 68.899 66.32 75.157 1 60.2 ? C10 KZ3 802 A 1 HETATM 23 C C11 KZ3 . . . D 4 70.031 66.65 75.909 1 68.19 ? C11 KZ3 802 A 1 HETATM 24 C C12 KZ3 . . . D 4 70.854 67.663 75.456 1 72.5 ? C12 KZ3 802 A 1 HETATM 25 C C14 KZ3 . . . D 4 69.45 68.033 73.515 1 62.12 ? C14 KZ3 802 A 1 HETATM 26 O O5 KZ3 . . . D 4 65.36 70.848 72.372 1 35.41 ? O5 KZ3 802 A 1 HETATM 27 F F1 KZ3 . . . D 4 70.33 66.01 77.05 1 65.17 ? F1 KZ3 802 A 1 HETATM 28 C C15 KZ3 . . . D 4 67.774 64.386 76.487 1 49.73 ? C15 KZ3 802 A 1 HETATM 29 C C16 KZ3 . . . D 4 67.203 64.982 77.752 1 46.34 ? C16 KZ3 802 A 1 HETATM 30 C C17 KZ3 . . . D 4 66.1 65.804 77.708 1 51.26 ? C17 KZ3 802 A 1 HETATM 31 C C24 KZ3 . . . D 4 64.955 68.034 81.394 1 50.19 ? C24 KZ3 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #