data_8HBH
#
_model_server_result.job_id            M4t3cjJjM0hyNm5p3AQJbQ 
_model_server_result.datetime_utc      '2024-11-22 22:25:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1002}' 
#
_entry.id    8HBH 
#
_exptl.entry_id    8HBH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HBH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ILE 487 A ILE 487 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 A OD1 ASP 530 A ASP 530 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc3 A OD2 ASP 530 A ASP 530 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc4 A OD2 ASP 530 A ASP 530 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc5 C MG MG . A MG 701 1_555 E O5' G2P . B G2P 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc6 D MG MG . A MG 702 1_555 E O1G G2P . B G2P 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc7 D MG MG . A MG 702 1_555 E O3B G2P . B G2P 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc8 D MG MG . A MG 702 1_555 E O2B G2P . B G2P 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc9 F FE HEM . B HEM 1002 1_555 G N NO . B NO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     8HBH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 701 1002 MG MG . 
D 3 MG A 1 702 1003 MG MG . 
E 4 G2P B 1 1001 1001 G2P G2P . 
F 5 HEM B 1 1002 1000 HEM HEM . 
G 6 NO B 1 1003 802 NO NO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 5 127.225 151.006 118.166 1 49.15 ? CHA HEM 1002 B 1 
HETATM 2 C CHB HEM . . . F 5 130.704 147.662 117.964 1 51.26 ? CHB HEM 1002 B 1 
HETATM 3 C CHC HEM . . . F 5 133.442 150.702 115.402 1 48.79 ? CHC HEM 1002 B 1 
HETATM 4 C CHD HEM . . . F 5 129.948 153.986 115.523 1 45.27 ? CHD HEM 1002 B 1 
HETATM 5 C C1A HEM . . . F 5 127.928 149.825 118.262 1 55.36 ? C1A HEM 1002 B 1 
HETATM 6 C C2A HEM . . . F 5 127.431 148.634 118.825 1 56.07 ? C2A HEM 1002 B 1 
HETATM 7 C C3A HEM . . . F 5 128.401 147.702 118.764 1 56.47 ? C3A HEM 1002 B 1 
HETATM 8 C C4A HEM . . . F 5 129.513 148.3 118.172 1 49.53 ? C4A HEM 1002 B 1 
HETATM 9 C CMA HEM . . . F 5 128.31 146.285 119.238 1 57.04 ? CMA HEM 1002 B 1 
HETATM 10 C CAA HEM . . . F 5 126.062 148.424 119.378 1 50.71 ? CAA HEM 1002 B 1 
HETATM 11 C CBA HEM . . . F 5 125.091 148.481 118.217 1 49.74 ? CBA HEM 1002 B 1 
HETATM 12 C CGA HEM . . . F 5 123.94 147.604 118.553 1 59.93 ? CGA HEM 1002 B 1 
HETATM 13 O O1A HEM . . . F 5 124.077 146.685 119.348 1 64.55 ? O1A HEM 1002 B 1 
HETATM 14 O O2A HEM . . . F 5 122.838 147.789 118.042 1 60.83 ? O2A HEM 1002 B 1 
HETATM 15 C C1B HEM . . . F 5 131.728 148.251 117.24 1 51.43 ? C1B HEM 1002 B 1 
HETATM 16 C C2B HEM . . . F 5 132.915 147.552 116.976 1 50.34 ? C2B HEM 1002 B 1 
HETATM 17 C C3B HEM . . . F 5 133.701 148.374 116.257 1 49.3 ? C3B HEM 1002 B 1 
HETATM 18 C C4B HEM . . . F 5 132.94 149.62 116.093 1 46.21 ? C4B HEM 1002 B 1 
HETATM 19 C CMB HEM . . . F 5 133.23 146.152 117.401 1 49.14 ? CMB HEM 1002 B 1 
HETATM 20 C CAB HEM . . . F 5 135.038 148.084 115.741 1 55.81 ? CAB HEM 1002 B 1 
HETATM 21 C CBB HEM . . . F 5 135.812 147.214 116.366 1 57.19 ? CBB HEM 1002 B 1 
HETATM 22 C C1C HEM . . . F 5 132.7 151.826 115.157 1 47.41 ? C1C HEM 1002 B 1 
HETATM 23 C C2C HEM . . . F 5 133.088 152.876 114.343 1 50.64 ? C2C HEM 1002 B 1 
HETATM 24 C C3C HEM . . . F 5 132.094 153.81 114.373 1 45.9 ? C3C HEM 1002 B 1 
HETATM 25 C C4C HEM . . . F 5 131.107 153.334 115.252 1 39.87 ? C4C HEM 1002 B 1 
HETATM 26 C CMC HEM . . . F 5 134.358 152.974 113.562 1 53.94 ? CMC HEM 1002 B 1 
HETATM 27 C CAC HEM . . . F 5 132.106 155.072 113.646 1 48.19 ? CAC HEM 1002 B 1 
HETATM 28 C CBC HEM . . . F 5 131.092 155.893 113.736 1 44.38 ? CBC HEM 1002 B 1 
HETATM 29 C C1D HEM . . . F 5 128.941 153.391 116.258 1 50.37 ? C1D HEM 1002 B 1 
HETATM 30 C C2D HEM . . . F 5 127.705 154.105 116.496 1 49.6 ? C2D HEM 1002 B 1 
HETATM 31 C C3D HEM . . . F 5 126.944 153.294 117.221 1 55.09 ? C3D HEM 1002 B 1 
HETATM 32 C C4D HEM . . . F 5 127.719 152.077 117.442 1 50.17 ? C4D HEM 1002 B 1 
HETATM 33 C CMD HEM . . . F 5 127.373 155.475 116.006 1 39.31 ? CMD HEM 1002 B 1 
HETATM 34 C CAD HEM . . . F 5 125.573 153.616 117.718 1 55.41 ? CAD HEM 1002 B 1 
HETATM 35 C CBD HEM . . . F 5 124.566 152.525 117.427 1 52.05 ? CBD HEM 1002 B 1 
HETATM 36 C CGD HEM . . . F 5 123.509 153.117 116.547 1 57.79 ? CGD HEM 1002 B 1 
HETATM 37 O O1D HEM . . . F 5 123.459 154.334 116.314 1 59.89 ? O1D HEM 1002 B 1 
HETATM 38 O O2D HEM . . . F 5 122.656 152.402 116.008 1 60.45 ? O2D HEM 1002 B 1 
HETATM 39 N NA HEM . . . F 5 129.225 149.599 117.891 1 54.15 ? NA HEM 1002 B 1 
HETATM 40 N NB HEM . . . F 5 131.777 149.473 116.721 1 48.28 ? NB HEM 1002 B 1 
HETATM 41 N NC HEM . . . F 5 131.501 152.115 115.713 1 45.16 ? NC HEM 1002 B 1 
HETATM 42 N ND HEM . . . F 5 128.911 152.193 116.851 1 55.49 ? ND HEM 1002 B 1 
HETATM 43 FE FE HEM . . . F 5 130.257 150.908 116.854 1 86.55 ? FE HEM 1002 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#