data_8HBL # _model_server_result.job_id HH2vxHQffCgZFNA6SacoOQ _model_server_result.datetime_utc '2024-11-21 09:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1603}' # _entry.id 8HBL # _exptl.entry_id 8HBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HBL _cell.length_a 85.671 _cell.length_b 85.671 _cell.length_c 76.662 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 417 1_555 A SG CYS 115 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 100 A CYS 516 1_555 A SG CYS 231 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8HBL _atom_sites.fract_transf_matrix[1][1] 0.011673 _atom_sites.fract_transf_matrix[1][2] 0.006739 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1601 1601 PO4 PO4 . C 3 LI A 1 1602 1801 LI LI . D 4 GOL A 1 1603 2701 GOL GOL . E 4 GOL A 1 1604 2801 GOL GOL . F 4 GOL A 1 1605 2901 GOL GOL . G 4 GOL A 1 1606 3001 GOL GOL . H 5 HOH A 1 1701 187 HOH HOH . H 5 HOH A 2 1702 168 HOH HOH . H 5 HOH A 3 1703 189 HOH HOH . H 5 HOH A 4 1704 179 HOH HOH . H 5 HOH A 5 1705 196 HOH HOH . H 5 HOH A 6 1706 79 HOH HOH . H 5 HOH A 7 1707 178 HOH HOH . H 5 HOH A 8 1708 9 HOH HOH . H 5 HOH A 9 1709 139 HOH HOH . H 5 HOH A 10 1710 195 HOH HOH . H 5 HOH A 11 1711 119 HOH HOH . H 5 HOH A 12 1712 33 HOH HOH . H 5 HOH A 13 1713 170 HOH HOH . H 5 HOH A 14 1714 123 HOH HOH . H 5 HOH A 15 1715 36 HOH HOH . H 5 HOH A 16 1716 5 HOH HOH . H 5 HOH A 17 1717 57 HOH HOH . H 5 HOH A 18 1718 157 HOH HOH . H 5 HOH A 19 1719 24 HOH HOH . H 5 HOH A 20 1720 1 HOH HOH . H 5 HOH A 21 1721 110 HOH HOH . H 5 HOH A 22 1722 54 HOH HOH . H 5 HOH A 23 1723 74 HOH HOH . H 5 HOH A 24 1724 72 HOH HOH . H 5 HOH A 25 1725 82 HOH HOH . H 5 HOH A 26 1726 169 HOH HOH . H 5 HOH A 27 1727 23 HOH HOH . H 5 HOH A 28 1728 114 HOH HOH . H 5 HOH A 29 1729 38 HOH HOH . H 5 HOH A 30 1730 193 HOH HOH . H 5 HOH A 31 1731 80 HOH HOH . H 5 HOH A 32 1732 17 HOH HOH . H 5 HOH A 33 1733 71 HOH HOH . H 5 HOH A 34 1734 3 HOH HOH . H 5 HOH A 35 1735 22 HOH HOH . H 5 HOH A 36 1736 10 HOH HOH . H 5 HOH A 37 1737 6 HOH HOH . H 5 HOH A 38 1738 61 HOH HOH . H 5 HOH A 39 1739 70 HOH HOH . H 5 HOH A 40 1740 27 HOH HOH . H 5 HOH A 41 1741 34 HOH HOH . H 5 HOH A 42 1742 151 HOH HOH . H 5 HOH A 43 1743 100 HOH HOH . H 5 HOH A 44 1744 14 HOH HOH . H 5 HOH A 45 1745 143 HOH HOH . H 5 HOH A 46 1746 102 HOH HOH . H 5 HOH A 47 1747 144 HOH HOH . H 5 HOH A 48 1748 165 HOH HOH . H 5 HOH A 49 1749 4 HOH HOH . H 5 HOH A 50 1750 67 HOH HOH . H 5 HOH A 51 1751 104 HOH HOH . H 5 HOH A 52 1752 69 HOH HOH . H 5 HOH A 53 1753 176 HOH HOH . H 5 HOH A 54 1754 2 HOH HOH . H 5 HOH A 55 1755 15 HOH HOH . H 5 HOH A 56 1756 52 HOH HOH . H 5 HOH A 57 1757 94 HOH HOH . H 5 HOH A 58 1758 83 HOH HOH . H 5 HOH A 59 1759 126 HOH HOH . H 5 HOH A 60 1760 120 HOH HOH . H 5 HOH A 61 1761 29 HOH HOH . H 5 HOH A 62 1762 55 HOH HOH . H 5 HOH A 63 1763 73 HOH HOH . H 5 HOH A 64 1764 7 HOH HOH . H 5 HOH A 65 1765 28 HOH HOH . H 5 HOH A 66 1766 43 HOH HOH . H 5 HOH A 67 1767 8 HOH HOH . H 5 HOH A 68 1768 103 HOH HOH . H 5 HOH A 69 1769 18 HOH HOH . H 5 HOH A 70 1770 109 HOH HOH . H 5 HOH A 71 1771 186 HOH HOH . H 5 HOH A 72 1772 12 HOH HOH . H 5 HOH A 73 1773 59 HOH HOH . H 5 HOH A 74 1774 63 HOH HOH . H 5 HOH A 75 1775 84 HOH HOH . H 5 HOH A 76 1776 177 HOH HOH . H 5 HOH A 77 1777 91 HOH HOH . H 5 HOH A 78 1778 26 HOH HOH . H 5 HOH A 79 1779 42 HOH HOH . H 5 HOH A 80 1780 132 HOH HOH . H 5 HOH A 81 1781 48 HOH HOH . H 5 HOH A 82 1782 64 HOH HOH . H 5 HOH A 83 1783 185 HOH HOH . H 5 HOH A 84 1784 47 HOH HOH . H 5 HOH A 85 1785 93 HOH HOH . H 5 HOH A 86 1786 60 HOH HOH . H 5 HOH A 87 1787 129 HOH HOH . H 5 HOH A 88 1788 20 HOH HOH . H 5 HOH A 89 1789 113 HOH HOH . H 5 HOH A 90 1790 164 HOH HOH . H 5 HOH A 91 1791 40 HOH HOH . H 5 HOH A 92 1792 50 HOH HOH . H 5 HOH A 93 1793 197 HOH HOH . H 5 HOH A 94 1794 75 HOH HOH . H 5 HOH A 95 1795 166 HOH HOH . H 5 HOH A 96 1796 62 HOH HOH . H 5 HOH A 97 1797 53 HOH HOH . H 5 HOH A 98 1798 127 HOH HOH . H 5 HOH A 99 1799 41 HOH HOH . H 5 HOH A 100 1800 163 HOH HOH . H 5 HOH A 101 1801 56 HOH HOH . H 5 HOH A 102 1802 19 HOH HOH . H 5 HOH A 103 1803 146 HOH HOH . H 5 HOH A 104 1804 32 HOH HOH . H 5 HOH A 105 1805 77 HOH HOH . H 5 HOH A 106 1806 96 HOH HOH . H 5 HOH A 107 1807 65 HOH HOH . H 5 HOH A 108 1808 45 HOH HOH . H 5 HOH A 109 1809 44 HOH HOH . H 5 HOH A 110 1810 99 HOH HOH . H 5 HOH A 111 1811 131 HOH HOH . H 5 HOH A 112 1812 46 HOH HOH . H 5 HOH A 113 1813 183 HOH HOH . H 5 HOH A 114 1814 92 HOH HOH . H 5 HOH A 115 1815 198 HOH HOH . H 5 HOH A 116 1816 35 HOH HOH . H 5 HOH A 117 1817 175 HOH HOH . H 5 HOH A 118 1818 125 HOH HOH . H 5 HOH A 119 1819 30 HOH HOH . H 5 HOH A 120 1820 174 HOH HOH . H 5 HOH A 121 1821 172 HOH HOH . H 5 HOH A 122 1822 16 HOH HOH . H 5 HOH A 123 1823 199 HOH HOH . H 5 HOH A 124 1824 39 HOH HOH . H 5 HOH A 125 1825 162 HOH HOH . H 5 HOH A 126 1826 21 HOH HOH . H 5 HOH A 127 1827 105 HOH HOH . H 5 HOH A 128 1828 49 HOH HOH . H 5 HOH A 129 1829 182 HOH HOH . H 5 HOH A 130 1830 89 HOH HOH . H 5 HOH A 131 1831 115 HOH HOH . H 5 HOH A 132 1832 76 HOH HOH . H 5 HOH A 133 1833 160 HOH HOH . H 5 HOH A 134 1834 31 HOH HOH . H 5 HOH A 135 1835 135 HOH HOH . H 5 HOH A 136 1836 66 HOH HOH . H 5 HOH A 137 1837 78 HOH HOH . H 5 HOH A 138 1838 51 HOH HOH . H 5 HOH A 139 1839 173 HOH HOH . H 5 HOH A 140 1840 181 HOH HOH . H 5 HOH A 141 1841 148 HOH HOH . H 5 HOH A 142 1842 134 HOH HOH . H 5 HOH A 143 1843 95 HOH HOH . H 5 HOH A 144 1844 154 HOH HOH . H 5 HOH A 145 1845 98 HOH HOH . H 5 HOH A 146 1846 81 HOH HOH . H 5 HOH A 147 1847 194 HOH HOH . H 5 HOH A 148 1848 138 HOH HOH . H 5 HOH A 149 1849 188 HOH HOH . H 5 HOH A 150 1850 200 HOH HOH . H 5 HOH A 151 1851 149 HOH HOH . H 5 HOH A 152 1852 155 HOH HOH . H 5 HOH A 153 1853 11 HOH HOH . H 5 HOH A 154 1854 90 HOH HOH . H 5 HOH A 155 1855 150 HOH HOH . H 5 HOH A 156 1856 136 HOH HOH . H 5 HOH A 157 1857 192 HOH HOH . H 5 HOH A 158 1858 101 HOH HOH . H 5 HOH A 159 1859 68 HOH HOH . H 5 HOH A 160 1860 142 HOH HOH . H 5 HOH A 161 1861 158 HOH HOH . H 5 HOH A 162 1862 58 HOH HOH . H 5 HOH A 163 1863 184 HOH HOH . H 5 HOH A 164 1864 118 HOH HOH . H 5 HOH A 165 1865 190 HOH HOH . H 5 HOH A 166 1866 87 HOH HOH . H 5 HOH A 167 1867 140 HOH HOH . H 5 HOH A 168 1868 156 HOH HOH . H 5 HOH A 169 1869 85 HOH HOH . H 5 HOH A 170 1870 116 HOH HOH . H 5 HOH A 171 1871 13 HOH HOH . H 5 HOH A 172 1872 106 HOH HOH . H 5 HOH A 173 1873 191 HOH HOH . H 5 HOH A 174 1874 137 HOH HOH . H 5 HOH A 175 1875 25 HOH HOH . H 5 HOH A 176 1876 86 HOH HOH . H 5 HOH A 177 1877 133 HOH HOH . H 5 HOH A 178 1878 130 HOH HOH . H 5 HOH A 179 1879 171 HOH HOH . H 5 HOH A 180 1880 121 HOH HOH . H 5 HOH A 181 1881 153 HOH HOH . H 5 HOH A 182 1882 108 HOH HOH . H 5 HOH A 183 1883 147 HOH HOH . H 5 HOH A 184 1884 122 HOH HOH . H 5 HOH A 185 1885 107 HOH HOH . H 5 HOH A 186 1886 111 HOH HOH . H 5 HOH A 187 1887 117 HOH HOH . H 5 HOH A 188 1888 88 HOH HOH . H 5 HOH A 189 1889 37 HOH HOH . H 5 HOH A 190 1890 159 HOH HOH . H 5 HOH A 191 1891 141 HOH HOH . H 5 HOH A 192 1892 161 HOH HOH . H 5 HOH A 193 1893 145 HOH HOH . H 5 HOH A 194 1894 128 HOH HOH . H 5 HOH A 195 1895 167 HOH HOH . H 5 HOH A 196 1896 112 HOH HOH . H 5 HOH A 197 1897 152 HOH HOH . H 5 HOH A 198 1898 180 HOH HOH . H 5 HOH A 199 1899 97 HOH HOH . H 5 HOH A 200 1900 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 14.261 -39.884 -3.563 1 33.66 ? C1 GOL 1603 A 1 HETATM 2 O O1 GOL . . . D 4 14.036 -38.65 -2.838 1 34.36 ? O1 GOL 1603 A 1 HETATM 3 C C2 GOL . . . D 4 13.013 -40.626 -3.661 1 33.51 ? C2 GOL 1603 A 1 HETATM 4 O O2 GOL . . . D 4 13.167 -41.743 -4.513 1 31.94 ? O2 GOL 1603 A 1 HETATM 5 C C3 GOL . . . D 4 12.753 -41.184 -2.18 1 33.6 ? C3 GOL 1603 A 1 HETATM 6 O O3 GOL . . . D 4 11.421 -41.659 -2.231 1 35.24 ? O3 GOL 1603 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #