data_8HBV # _model_server_result.job_id WyHRjlfHWQD-cQlbXBPR8A _model_server_result.datetime_utc '2024-11-05 08:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8HBV # _exptl.entry_id 8HBV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HBV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 24 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 98 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 96 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 490 n n P O14 PC1 doub 491 n n P O13 PC1 sing 492 n n P O11 PC1 sing 493 n n O13 C11 PC1 sing 494 n n C11 C12 PC1 sing 495 n n C11 H111 PC1 sing 496 n n C11 H112 PC1 sing 497 n n C12 N PC1 sing 498 n n C12 H121 PC1 sing 499 n n C12 H122 PC1 sing 500 n n N C13 PC1 sing 501 n n N C14 PC1 sing 502 n n N C15 PC1 sing 503 n n C13 H131 PC1 sing 504 n n C13 H132 PC1 sing 505 n n C13 H133 PC1 sing 506 n n C14 H141 PC1 sing 507 n n C14 H142 PC1 sing 508 n n C14 H143 PC1 sing 509 n n C15 H151 PC1 sing 510 n n C15 H152 PC1 sing 511 n n C15 H153 PC1 sing 512 n n O11 C1 PC1 sing 513 n n C1 C2 PC1 sing 514 n n C1 H11 PC1 sing 515 n n C1 H12 PC1 sing 516 n n C2 O21 PC1 sing 517 n n C2 C3 PC1 sing 518 n n C2 H2 PC1 sing 519 n n O21 C21 PC1 sing 520 n n C21 O22 PC1 doub 521 n n C21 C22 PC1 sing 522 n n C22 C23 PC1 sing 523 n n C22 H221 PC1 sing 524 n n C22 H222 PC1 sing 525 n n C23 C24 PC1 sing 526 n n C23 H231 PC1 sing 527 n n C23 H232 PC1 sing 528 n n C24 C25 PC1 sing 529 n n C24 H241 PC1 sing 530 n n C24 H242 PC1 sing 531 n n C25 C26 PC1 sing 532 n n C25 H251 PC1 sing 533 n n C25 H252 PC1 sing 534 n n C26 C27 PC1 sing 535 n n C26 H261 PC1 sing 536 n n C26 H262 PC1 sing 537 n n C27 C28 PC1 sing 538 n n C27 H271 PC1 sing 539 n n C27 H272 PC1 sing 540 n n C28 C29 PC1 sing 541 n n C28 H281 PC1 sing 542 n n C28 H282 PC1 sing 543 n n C29 C2A PC1 sing 544 n n C29 H291 PC1 sing 545 n n C29 H292 PC1 sing 546 n n C2A C2B PC1 sing 547 n n C2A H2A1 PC1 sing 548 n n C2A H2A2 PC1 sing 549 n n C2B C2C PC1 sing 550 n n C2B H2B1 PC1 sing 551 n n C2B H2B2 PC1 sing 552 n n C2C C2D PC1 sing 553 n n C2C H2C1 PC1 sing 554 n n C2C H2C2 PC1 sing 555 n n C2D C2E PC1 sing 556 n n C2D H2D1 PC1 sing 557 n n C2D H2D2 PC1 sing 558 n n C2E C2F PC1 sing 559 n n C2E H2E1 PC1 sing 560 n n C2E H2E2 PC1 sing 561 n n C2F C2G PC1 sing 562 n n C2F H2F1 PC1 sing 563 n n C2F H2F2 PC1 sing 564 n n C2G C2H PC1 sing 565 n n C2G H2G1 PC1 sing 566 n n C2G H2G2 PC1 sing 567 n n C2H C2I PC1 sing 568 n n C2H H2H1 PC1 sing 569 n n C2H H2H2 PC1 sing 570 n n C2I H2I1 PC1 sing 571 n n C2I H2I2 PC1 sing 572 n n C2I H2I3 PC1 sing 573 n n C3 O31 PC1 sing 574 n n C3 H31 PC1 sing 575 n n C3 H32 PC1 sing 576 n n O31 C31 PC1 sing 577 n n C31 O32 PC1 doub 578 n n C31 C32 PC1 sing 579 n n C32 C33 PC1 sing 580 n n C32 H321 PC1 sing 581 n n C32 H322 PC1 sing 582 n n C33 C34 PC1 sing 583 n n C33 H331 PC1 sing 584 n n C33 H332 PC1 sing 585 n n C34 C35 PC1 sing 586 n n C34 H341 PC1 sing 587 n n C34 H342 PC1 sing 588 n n C35 C36 PC1 sing 589 n n C35 H351 PC1 sing 590 n n C35 H352 PC1 sing 591 n n C36 C37 PC1 sing 592 n n C36 H361 PC1 sing 593 n n C36 H362 PC1 sing 594 n n C37 C38 PC1 sing 595 n n C37 H371 PC1 sing 596 n n C37 H372 PC1 sing 597 n n C38 C39 PC1 sing 598 n n C38 H381 PC1 sing 599 n n C38 H382 PC1 sing 600 n n C39 C3A PC1 sing 601 n n C39 H391 PC1 sing 602 n n C39 H392 PC1 sing 603 n n C3A C3B PC1 sing 604 n n C3A H3A1 PC1 sing 605 n n C3A H3A2 PC1 sing 606 n n C3B C3C PC1 sing 607 n n C3B H3B1 PC1 sing 608 n n C3B H3B2 PC1 sing 609 n n C3C C3D PC1 sing 610 n n C3C H3C1 PC1 sing 611 n n C3C H3C2 PC1 sing 612 n n C3D C3E PC1 sing 613 n n C3D H3D1 PC1 sing 614 n n C3D H3D2 PC1 sing 615 n n C3E C3F PC1 sing 616 n n C3E H3E1 PC1 sing 617 n n C3E H3E2 PC1 sing 618 n n C3F C3G PC1 sing 619 n n C3F H3F1 PC1 sing 620 n n C3F H3F2 PC1 sing 621 n n C3G C3H PC1 sing 622 n n C3G H3G1 PC1 sing 623 n n C3G H3G2 PC1 sing 624 n n C3H C3I PC1 sing 625 n n C3H H3H1 PC1 sing 626 n n C3H H3H2 PC1 sing 627 n n C3I H3I1 PC1 sing 628 n n C3I H3I2 PC1 sing 629 n n C3I H3I3 PC1 sing 630 n n # _atom_sites.entry_id 8HBV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CDL A 1 401 1100 CDL CDL . D 4 PC1 A 1 402 1200 PC1 PC1 . E 4 PC1 A 1 403 1300 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . D 4 106.092 108.42 132.693 1 33.3 ? O12 PC1 402 A 1 HETATM 2 P P PC1 . . . D 4 105.678 109.423 131.655 1 33.3 ? P PC1 402 A 1 HETATM 3 O O14 PC1 . . . D 4 106.717 110.239 130.938 1 33.3 ? O14 PC1 402 A 1 HETATM 4 O O13 PC1 . . . D 4 104.791 108.655 130.557 1 33.3 ? O13 PC1 402 A 1 HETATM 5 O O11 PC1 . . . D 4 104.626 110.42 132.344 1 33.3 ? O11 PC1 402 A 1 HETATM 6 C C1 PC1 . . . D 4 103.757 111.268 131.597 1 33.3 ? C1 PC1 402 A 1 HETATM 7 C C2 PC1 . . . D 4 102.518 111.53 132.444 1 33.3 ? C2 PC1 402 A 1 HETATM 8 O O21 PC1 . . . D 4 102.618 112.752 133.156 1 33.3 ? O21 PC1 402 A 1 HETATM 9 C C21 PC1 . . . D 4 101.454 113.61 132.994 1 33.3 ? C21 PC1 402 A 1 HETATM 10 O O22 PC1 . . . D 4 101.018 113.843 131.883 1 33.3 ? O22 PC1 402 A 1 HETATM 11 C C22 PC1 . . . D 4 100.81 114.212 134.218 1 33.3 ? C22 PC1 402 A 1 HETATM 12 C C23 PC1 . . . D 4 100.044 115.481 133.887 1 33.3 ? C23 PC1 402 A 1 HETATM 13 C C24 PC1 . . . D 4 99.743 116.228 135.182 1 33.3 ? C24 PC1 402 A 1 HETATM 14 C C25 PC1 . . . D 4 98.979 117.524 134.945 1 33.3 ? C25 PC1 402 A 1 HETATM 15 C C26 PC1 . . . D 4 99.525 118.623 135.843 1 33.3 ? C26 PC1 402 A 1 HETATM 16 C C27 PC1 . . . D 4 98.488 119.184 136.805 1 33.3 ? C27 PC1 402 A 1 HETATM 17 C C28 PC1 . . . D 4 99.096 120.322 137.61 1 33.3 ? C28 PC1 402 A 1 HETATM 18 C C29 PC1 . . . D 4 98.14 120.81 138.691 1 33.3 ? C29 PC1 402 A 1 HETATM 19 C C3 PC1 . . . D 4 102.441 110.415 133.47 1 33.3 ? C3 PC1 402 A 1 HETATM 20 O O31 PC1 . . . D 4 102.178 110.977 134.745 1 33.3 ? O31 PC1 402 A 1 HETATM 21 C C31 PC1 . . . D 4 101.635 110.132 135.79 1 33.3 ? C31 PC1 402 A 1 HETATM 22 O O32 PC1 . . . D 4 101.748 108.924 135.694 1 33.3 ? O32 PC1 402 A 1 HETATM 23 C C32 PC1 . . . D 4 100.923 110.742 136.97 1 33.3 ? C32 PC1 402 A 1 HETATM 24 C C33 PC1 . . . D 4 101.901 111.634 137.713 1 33.3 ? C33 PC1 402 A 1 HETATM 25 C C34 PC1 . . . D 4 101.502 111.8 139.172 1 33.3 ? C34 PC1 402 A 1 HETATM 26 C C35 PC1 . . . D 4 100.21 112.59 139.318 1 33.3 ? C35 PC1 402 A 1 HETATM 27 C C36 PC1 . . . D 4 100.391 113.668 140.378 1 33.3 ? C36 PC1 402 A 1 HETATM 28 C C37 PC1 . . . D 4 100.847 113.061 141.7 1 33.3 ? C37 PC1 402 A 1 HETATM 29 C C38 PC1 . . . D 4 101.126 114.145 142.734 1 33.3 ? C38 PC1 402 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #