data_8HCG # _model_server_result.job_id NF_ThljPeEZ31xS-q3vhXQ _model_server_result.datetime_utc '2024-11-08 01:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8HCG # _exptl.entry_id 8HCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HCG _cell.length_a 92.585 _cell.length_b 92.585 _cell.length_c 67.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 22.48 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 18 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A OD2 ASP 8 A ASP 18 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc3 A OD2 ASP 8 A ASP 18 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A OE2 GLU 10 A GLU 20 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 A OD2 ASP 190 A ASP 200 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 G O1P D5M . A D5M 306 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc7 G O1P D5M . A D5M 306 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 G O2P D5M . A D5M 306 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc9 H MG MG . A MG 307 1_555 J O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc10 H MG MG . A MG 307 1_555 J O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 H MG MG . A MG 307 1_555 J O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8HCG _atom_sites.fract_transf_matrix[1][1] 0.010801 _atom_sites.fract_transf_matrix[1][2] 0.006236 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 301 302 1PE 1PE . C 2 1PE A 1 302 303 1PE 1PE . D 2 1PE A 1 303 304 1PE 1PE . E 3 NA A 1 304 305 NA NA . F 3 NA A 1 305 306 NA NA . G 4 D5M A 1 306 307 D5M D5M . H 5 MG A 1 307 3 MG MG . I 5 MG A 1 308 4 MG MG . J 6 HOH A 1 401 89 HOH HOH . J 6 HOH A 2 402 85 HOH HOH . J 6 HOH A 3 403 13 HOH HOH . J 6 HOH A 4 404 20 HOH HOH . J 6 HOH A 5 405 38 HOH HOH . J 6 HOH A 6 406 28 HOH HOH . J 6 HOH A 7 407 9 HOH HOH . J 6 HOH A 8 408 30 HOH HOH . J 6 HOH A 9 409 81 HOH HOH . J 6 HOH A 10 410 6 HOH HOH . J 6 HOH A 11 411 46 HOH HOH . J 6 HOH A 12 412 79 HOH HOH . J 6 HOH A 13 413 32 HOH HOH . J 6 HOH A 14 414 64 HOH HOH . J 6 HOH A 15 415 14 HOH HOH . J 6 HOH A 16 416 22 HOH HOH . J 6 HOH A 17 417 16 HOH HOH . J 6 HOH A 18 418 15 HOH HOH . J 6 HOH A 19 419 70 HOH HOH . J 6 HOH A 20 420 3 HOH HOH . J 6 HOH A 21 421 54 HOH HOH . J 6 HOH A 22 422 96 HOH HOH . J 6 HOH A 23 423 74 HOH HOH . J 6 HOH A 24 424 37 HOH HOH . J 6 HOH A 25 425 59 HOH HOH . J 6 HOH A 26 426 26 HOH HOH . J 6 HOH A 27 427 51 HOH HOH . J 6 HOH A 28 428 1 HOH HOH . J 6 HOH A 29 429 2 HOH HOH . J 6 HOH A 30 430 58 HOH HOH . J 6 HOH A 31 431 43 HOH HOH . J 6 HOH A 32 432 8 HOH HOH . J 6 HOH A 33 433 31 HOH HOH . J 6 HOH A 34 434 23 HOH HOH . J 6 HOH A 35 435 41 HOH HOH . J 6 HOH A 36 436 10 HOH HOH . J 6 HOH A 37 437 48 HOH HOH . J 6 HOH A 38 438 67 HOH HOH . J 6 HOH A 39 439 75 HOH HOH . J 6 HOH A 40 440 55 HOH HOH . J 6 HOH A 41 441 29 HOH HOH . J 6 HOH A 42 442 42 HOH HOH . J 6 HOH A 43 443 4 HOH HOH . J 6 HOH A 44 444 56 HOH HOH . J 6 HOH A 45 445 17 HOH HOH . J 6 HOH A 46 446 27 HOH HOH . J 6 HOH A 47 447 50 HOH HOH . J 6 HOH A 48 448 95 HOH HOH . J 6 HOH A 49 449 24 HOH HOH . J 6 HOH A 50 450 12 HOH HOH . J 6 HOH A 51 451 62 HOH HOH . J 6 HOH A 52 452 19 HOH HOH . J 6 HOH A 53 453 35 HOH HOH . J 6 HOH A 54 454 7 HOH HOH . J 6 HOH A 55 455 69 HOH HOH . J 6 HOH A 56 456 5 HOH HOH . J 6 HOH A 57 457 34 HOH HOH . J 6 HOH A 58 458 21 HOH HOH . J 6 HOH A 59 459 18 HOH HOH . J 6 HOH A 60 460 40 HOH HOH . J 6 HOH A 61 461 47 HOH HOH . J 6 HOH A 62 462 25 HOH HOH . J 6 HOH A 63 463 97 HOH HOH . J 6 HOH A 64 464 94 HOH HOH . J 6 HOH A 65 465 77 HOH HOH . J 6 HOH A 66 466 33 HOH HOH . J 6 HOH A 67 467 82 HOH HOH . J 6 HOH A 68 468 80 HOH HOH . J 6 HOH A 69 469 57 HOH HOH . J 6 HOH A 70 470 45 HOH HOH . J 6 HOH A 71 471 72 HOH HOH . J 6 HOH A 72 472 65 HOH HOH . J 6 HOH A 73 473 60 HOH HOH . J 6 HOH A 74 474 76 HOH HOH . J 6 HOH A 75 475 86 HOH HOH . J 6 HOH A 76 476 66 HOH HOH . J 6 HOH A 77 477 36 HOH HOH . J 6 HOH A 78 478 39 HOH HOH . J 6 HOH A 79 479 91 HOH HOH . J 6 HOH A 80 480 63 HOH HOH . J 6 HOH A 81 481 11 HOH HOH . J 6 HOH A 82 482 68 HOH HOH . J 6 HOH A 83 483 83 HOH HOH . J 6 HOH A 84 484 106 HOH HOH . J 6 HOH A 85 485 44 HOH HOH . J 6 HOH A 86 486 92 HOH HOH . J 6 HOH A 87 487 105 HOH HOH . J 6 HOH A 88 488 84 HOH HOH . J 6 HOH A 89 489 102 HOH HOH . J 6 HOH A 90 490 78 HOH HOH . J 6 HOH A 91 491 100 HOH HOH . J 6 HOH A 92 492 52 HOH HOH . J 6 HOH A 93 493 98 HOH HOH . J 6 HOH A 94 494 71 HOH HOH . J 6 HOH A 95 495 73 HOH HOH . J 6 HOH A 96 496 99 HOH HOH . J 6 HOH A 97 497 90 HOH HOH . J 6 HOH A 98 498 93 HOH HOH . J 6 HOH A 99 499 53 HOH HOH . J 6 HOH A 100 500 49 HOH HOH . J 6 HOH A 101 501 61 HOH HOH . J 6 HOH A 102 502 87 HOH HOH . J 6 HOH A 103 503 88 HOH HOH . J 6 HOH A 104 504 103 HOH HOH . J 6 HOH A 105 505 101 HOH HOH . J 6 HOH A 106 506 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -50.034 23.852 11.534 1 94.6 ? OH2 1PE 301 A 1 HETATM 2 C C12 1PE . . . B 2 -50.646 22.593 11.516 1 59.9 ? C12 1PE 301 A 1 HETATM 3 C C22 1PE . . . B 2 -49.508 21.559 11.76 1 54.44 ? C22 1PE 301 A 1 HETATM 4 O OH3 1PE . . . B 2 -49.725 21.027 13.059 1 69.73 ? OH3 1PE 301 A 1 HETATM 5 C C13 1PE . . . B 2 -47.767 19.71 13.276 1 49.74 ? C13 1PE 301 A 1 HETATM 6 C C23 1PE . . . B 2 -49.278 19.717 13.226 1 52.92 ? C23 1PE 301 A 1 HETATM 7 O OH4 1PE . . . B 2 -47.336 20.661 14.221 1 39.14 ? OH4 1PE 301 A 1 HETATM 8 C C14 1PE . . . B 2 -46.206 21.265 16.172 1 36.14 ? C14 1PE 301 A 1 HETATM 9 C C24 1PE . . . B 2 -46.545 20.183 15.19 1 32.4 ? C24 1PE 301 A 1 HETATM 10 O OH5 1PE . . . B 2 -46.077 22.459 15.498 1 40.78 ? OH5 1PE 301 A 1 HETATM 11 C C15 1PE . . . B 2 -45.165 24.679 15.333 1 40.91 ? C15 1PE 301 A 1 HETATM 12 C C25 1PE . . . B 2 -45.697 23.582 16.296 1 40.24 ? C25 1PE 301 A 1 HETATM 13 O OH6 1PE . . . B 2 -46.319 25.322 14.758 1 52.26 ? OH6 1PE 301 A 1 HETATM 14 C C16 1PE . . . B 2 -47.281 26.827 13.159 1 55.22 ? C16 1PE 301 A 1 HETATM 15 C C26 1PE . . . B 2 -46.001 26.195 13.726 1 48.36 ? C26 1PE 301 A 1 HETATM 16 O OH7 1PE . . . B 2 -47.805 25.919 12.214 1 71.36 ? OH7 1PE 301 A 1 HETATM 17 H HO2 1PE . . . B 2 -49.63 23.941 10.791 1 113.5 ? HO2 1PE 301 A 1 HETATM 18 H H121 1PE . . . B 2 -51.333 22.518 12.197 1 71.87 ? H121 1PE 301 A 1 HETATM 19 H H122 1PE . . . B 2 -51.093 22.423 10.673 1 71.87 ? H122 1PE 301 A 1 HETATM 20 H H221 1PE . . . B 2 -49.532 20.874 11.073 1 65.32 ? H221 1PE 301 A 1 HETATM 21 H H222 1PE . . . B 2 -48.645 21.994 11.679 1 65.32 ? H222 1PE 301 A 1 HETATM 22 H H131 1PE . . . B 2 -47.471 18.811 13.49 1 59.67 ? H131 1PE 301 A 1 HETATM 23 H H132 1PE . . . B 2 -47.429 19.89 12.384 1 59.67 ? H132 1PE 301 A 1 HETATM 24 H H231 1PE . . . B 2 -49.639 19.332 14.039 1 63.49 ? H231 1PE 301 A 1 HETATM 25 H H232 1PE . . . B 2 -49.588 19.154 12.5 1 63.49 ? H232 1PE 301 A 1 HETATM 26 H H141 1PE . . . B 2 -46.9 21.291 16.85 1 43.36 ? H141 1PE 301 A 1 HETATM 27 H H142 1PE . . . B 2 -45.396 21.01 16.64 1 43.36 ? H142 1PE 301 A 1 HETATM 28 H H241 1PE . . . B 2 -46.98 19.449 15.652 1 38.87 ? H241 1PE 301 A 1 HETATM 29 H H242 1PE . . . B 2 -45.73 19.817 14.814 1 38.87 ? H242 1PE 301 A 1 HETATM 30 H H151 1PE . . . B 2 -44.6 25.288 15.834 1 49.08 ? H151 1PE 301 A 1 HETATM 31 H H152 1PE . . . B 2 -44.591 24.264 14.671 1 49.08 ? H152 1PE 301 A 1 HETATM 32 H H251 1PE . . . B 2 -46.447 23.916 16.813 1 48.27 ? H251 1PE 301 A 1 HETATM 33 H H252 1PE . . . B 2 -45.017 23.339 16.944 1 48.27 ? H252 1PE 301 A 1 HETATM 34 H H161 1PE . . . B 2 -47.898 27.01 13.885 1 66.26 ? H161 1PE 301 A 1 HETATM 35 H H162 1PE . . . B 2 -47.069 27.69 12.772 1 66.26 ? H162 1PE 301 A 1 HETATM 36 H H261 1PE . . . B 2 -45.407 26.895 14.039 1 58.03 ? H261 1PE 301 A 1 HETATM 37 H H262 1PE . . . B 2 -45.529 25.731 13.017 1 58.03 ? H262 1PE 301 A 1 HETATM 38 H HO7 1PE . . . B 2 -47.454 26.111 11.464 1 85.62 ? HO7 1PE 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #