data_8HCG # _model_server_result.job_id HqkILf3UWnNPAT6BSR1Rqg _model_server_result.datetime_utc '2024-11-23 07:38:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8HCG # _exptl.entry_id 8HCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HCG _cell.length_a 92.585 _cell.length_b 92.585 _cell.length_c 67.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 22.48 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 18 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A OD2 ASP 8 A ASP 18 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc3 A OD2 ASP 8 A ASP 18 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A OE2 GLU 10 A GLU 20 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 A OD2 ASP 190 A ASP 200 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 G O1P D5M . A D5M 306 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc7 G O1P D5M . A D5M 306 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 G O2P D5M . A D5M 306 1_555 I MG MG . A MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc9 H MG MG . A MG 307 1_555 J O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc10 H MG MG . A MG 307 1_555 J O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 H MG MG . A MG 307 1_555 J O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HCG _atom_sites.fract_transf_matrix[1][1] 0.010801 _atom_sites.fract_transf_matrix[1][2] 0.006236 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 301 302 1PE 1PE . C 2 1PE A 1 302 303 1PE 1PE . D 2 1PE A 1 303 304 1PE 1PE . E 3 NA A 1 304 305 NA NA . F 3 NA A 1 305 306 NA NA . G 4 D5M A 1 306 307 D5M D5M . H 5 MG A 1 307 3 MG MG . I 5 MG A 1 308 4 MG MG . J 6 HOH A 1 401 89 HOH HOH . J 6 HOH A 2 402 85 HOH HOH . J 6 HOH A 3 403 13 HOH HOH . J 6 HOH A 4 404 20 HOH HOH . J 6 HOH A 5 405 38 HOH HOH . J 6 HOH A 6 406 28 HOH HOH . J 6 HOH A 7 407 9 HOH HOH . J 6 HOH A 8 408 30 HOH HOH . J 6 HOH A 9 409 81 HOH HOH . J 6 HOH A 10 410 6 HOH HOH . J 6 HOH A 11 411 46 HOH HOH . J 6 HOH A 12 412 79 HOH HOH . J 6 HOH A 13 413 32 HOH HOH . J 6 HOH A 14 414 64 HOH HOH . J 6 HOH A 15 415 14 HOH HOH . J 6 HOH A 16 416 22 HOH HOH . J 6 HOH A 17 417 16 HOH HOH . J 6 HOH A 18 418 15 HOH HOH . J 6 HOH A 19 419 70 HOH HOH . J 6 HOH A 20 420 3 HOH HOH . J 6 HOH A 21 421 54 HOH HOH . J 6 HOH A 22 422 96 HOH HOH . J 6 HOH A 23 423 74 HOH HOH . J 6 HOH A 24 424 37 HOH HOH . J 6 HOH A 25 425 59 HOH HOH . J 6 HOH A 26 426 26 HOH HOH . J 6 HOH A 27 427 51 HOH HOH . J 6 HOH A 28 428 1 HOH HOH . J 6 HOH A 29 429 2 HOH HOH . J 6 HOH A 30 430 58 HOH HOH . J 6 HOH A 31 431 43 HOH HOH . J 6 HOH A 32 432 8 HOH HOH . J 6 HOH A 33 433 31 HOH HOH . J 6 HOH A 34 434 23 HOH HOH . J 6 HOH A 35 435 41 HOH HOH . J 6 HOH A 36 436 10 HOH HOH . J 6 HOH A 37 437 48 HOH HOH . J 6 HOH A 38 438 67 HOH HOH . J 6 HOH A 39 439 75 HOH HOH . J 6 HOH A 40 440 55 HOH HOH . J 6 HOH A 41 441 29 HOH HOH . J 6 HOH A 42 442 42 HOH HOH . J 6 HOH A 43 443 4 HOH HOH . J 6 HOH A 44 444 56 HOH HOH . J 6 HOH A 45 445 17 HOH HOH . J 6 HOH A 46 446 27 HOH HOH . J 6 HOH A 47 447 50 HOH HOH . J 6 HOH A 48 448 95 HOH HOH . J 6 HOH A 49 449 24 HOH HOH . J 6 HOH A 50 450 12 HOH HOH . J 6 HOH A 51 451 62 HOH HOH . J 6 HOH A 52 452 19 HOH HOH . J 6 HOH A 53 453 35 HOH HOH . J 6 HOH A 54 454 7 HOH HOH . J 6 HOH A 55 455 69 HOH HOH . J 6 HOH A 56 456 5 HOH HOH . J 6 HOH A 57 457 34 HOH HOH . J 6 HOH A 58 458 21 HOH HOH . J 6 HOH A 59 459 18 HOH HOH . J 6 HOH A 60 460 40 HOH HOH . J 6 HOH A 61 461 47 HOH HOH . J 6 HOH A 62 462 25 HOH HOH . J 6 HOH A 63 463 97 HOH HOH . J 6 HOH A 64 464 94 HOH HOH . J 6 HOH A 65 465 77 HOH HOH . J 6 HOH A 66 466 33 HOH HOH . J 6 HOH A 67 467 82 HOH HOH . J 6 HOH A 68 468 80 HOH HOH . J 6 HOH A 69 469 57 HOH HOH . J 6 HOH A 70 470 45 HOH HOH . J 6 HOH A 71 471 72 HOH HOH . J 6 HOH A 72 472 65 HOH HOH . J 6 HOH A 73 473 60 HOH HOH . J 6 HOH A 74 474 76 HOH HOH . J 6 HOH A 75 475 86 HOH HOH . J 6 HOH A 76 476 66 HOH HOH . J 6 HOH A 77 477 36 HOH HOH . J 6 HOH A 78 478 39 HOH HOH . J 6 HOH A 79 479 91 HOH HOH . J 6 HOH A 80 480 63 HOH HOH . J 6 HOH A 81 481 11 HOH HOH . J 6 HOH A 82 482 68 HOH HOH . J 6 HOH A 83 483 83 HOH HOH . J 6 HOH A 84 484 106 HOH HOH . J 6 HOH A 85 485 44 HOH HOH . J 6 HOH A 86 486 92 HOH HOH . J 6 HOH A 87 487 105 HOH HOH . J 6 HOH A 88 488 84 HOH HOH . J 6 HOH A 89 489 102 HOH HOH . J 6 HOH A 90 490 78 HOH HOH . J 6 HOH A 91 491 100 HOH HOH . J 6 HOH A 92 492 52 HOH HOH . J 6 HOH A 93 493 98 HOH HOH . J 6 HOH A 94 494 71 HOH HOH . J 6 HOH A 95 495 73 HOH HOH . J 6 HOH A 96 496 99 HOH HOH . J 6 HOH A 97 497 90 HOH HOH . J 6 HOH A 98 498 93 HOH HOH . J 6 HOH A 99 499 53 HOH HOH . J 6 HOH A 100 500 49 HOH HOH . J 6 HOH A 101 501 61 HOH HOH . J 6 HOH A 102 502 87 HOH HOH . J 6 HOH A 103 503 88 HOH HOH . J 6 HOH A 104 504 103 HOH HOH . J 6 HOH A 105 505 101 HOH HOH . J 6 HOH A 106 506 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -30.468 _atom_site.Cartn_y 28.572 _atom_site.Cartn_z 21.217 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #