data_8HCK # _model_server_result.job_id 1jvcGyjtw9RfJuTAlCYBHQ _model_server_result.datetime_utc '2024-11-14 16:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8HCK # _exptl.entry_id 8HCK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-BUTYL-1,2-DIPHENYL-PYRAZOLIDINE-3,5-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HCK _cell.length_a 49.353 _cell.length_b 49.353 _cell.length_c 75.254 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 8 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 6 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 8 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 6 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H20 N2 O2' _chem_comp.formula_weight 308.374 _chem_comp.id P1Z _chem_comp.mon_nstd_flag . _chem_comp.name 4-BUTYL-1,2-DIPHENYL-PYRAZOLIDINE-3,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 P1Z doub 250 n y C16 C15 P1Z sing 251 n y C16 H16 P1Z sing 252 n n C17 C12 P1Z sing 253 n y C17 H17 P1Z sing 254 n n C12 C13 P1Z doub 255 n y C12 N2 P1Z sing 256 n n C13 C14 P1Z sing 257 n y C13 H13 P1Z sing 258 n n C14 C15 P1Z doub 259 n y C14 H14 P1Z sing 260 n n C15 H15 P1Z sing 261 n n C8 C9 P1Z doub 262 n y C8 C7 P1Z sing 263 n y C8 H8 P1Z sing 264 n n C9 C10 P1Z sing 265 n y C9 H9 P1Z sing 266 n n C10 C11 P1Z doub 267 n y C10 H10 P1Z sing 268 n n C11 C6 P1Z sing 269 n y C11 H11 P1Z sing 270 n n C6 C7 P1Z doub 271 n y C6 N1 P1Z sing 272 n n C7 H7 P1Z sing 273 n n C21 C20 P1Z sing 274 n n C21 H211 P1Z sing 275 n n C21 H212 P1Z sing 276 n n C21 H213 P1Z sing 277 n n C20 C19 P1Z sing 278 n n C20 H201 P1Z sing 279 n n C20 H202 P1Z sing 280 n n C19 C18 P1Z sing 281 n n C19 H191 P1Z sing 282 n n C19 H192 P1Z sing 283 n n C18 C4 P1Z sing 284 n n C18 H181 P1Z sing 285 n n C18 H182 P1Z sing 286 n n N2 C3 P1Z sing 287 n n N2 N1 P1Z sing 288 n n C3 C4 P1Z sing 289 n n C3 O3 P1Z doub 290 n n C4 C5 P1Z sing 291 n n C4 H4 P1Z sing 292 n n C5 N1 P1Z sing 293 n n C5 O5 P1Z doub 294 n n # _atom_sites.entry_id 8HCK _atom_sites.fract_transf_matrix[1][1] 0.020262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P1Z A 1 101 101 P1Z LIG . C 3 SO4 A 1 102 1 SO4 SO4 . D 3 SO4 A 1 103 2 SO4 SO4 . E 4 GOL A 1 104 101 GOL GOL . F 4 GOL A 1 105 201 GOL GOL . G 5 HOH A 1 201 2 HOH HOH . G 5 HOH A 2 202 5 HOH HOH . G 5 HOH A 3 203 7 HOH HOH . G 5 HOH A 4 204 15 HOH HOH . G 5 HOH A 5 205 14 HOH HOH . G 5 HOH A 6 206 16 HOH HOH . G 5 HOH A 7 207 1 HOH HOH . G 5 HOH A 8 208 10 HOH HOH . G 5 HOH A 9 209 3 HOH HOH . G 5 HOH A 10 210 18 HOH HOH . G 5 HOH A 11 211 4 HOH HOH . G 5 HOH A 12 212 19 HOH HOH . G 5 HOH A 13 213 11 HOH HOH . G 5 HOH A 14 214 12 HOH HOH . G 5 HOH A 15 215 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 P1Z . . . B 2 17.853 1.519 5.144 1 63.95 ? C16 P1Z 101 A 1 HETATM 2 C C17 P1Z . . . B 2 16.99 1.374 4.073 1 65.88 ? C17 P1Z 101 A 1 HETATM 3 C C12 P1Z . . . B 2 15.75 0.778 4.251 1 72.28 ? C12 P1Z 101 A 1 HETATM 4 C C13 P1Z . . . B 2 15.387 0.325 5.514 1 73.59 ? C13 P1Z 101 A 1 HETATM 5 C C14 P1Z . . . B 2 16.252 0.475 6.588 1 69.42 ? C14 P1Z 101 A 1 HETATM 6 C C15 P1Z . . . B 2 17.489 1.07 6.402 1 66.2 ? C15 P1Z 101 A 1 HETATM 7 C C8 P1Z . . . B 2 10.973 2.081 5.591 1 72.57 ? C8 P1Z 101 A 1 HETATM 8 C C9 P1Z . . . B 2 10.447 0.949 6.187 1 72.16 ? C9 P1Z 101 A 1 HETATM 9 C C10 P1Z . . . B 2 10.865 -0.307 5.778 1 73.24 ? C10 P1Z 101 A 1 HETATM 10 C C11 P1Z . . . B 2 11.81 -0.438 4.774 1 73.85 ? C11 P1Z 101 A 1 HETATM 11 C C6 P1Z . . . B 2 12.354 0.694 4.188 1 72.34 ? C6 P1Z 101 A 1 HETATM 12 C C7 P1Z . . . B 2 11.918 1.953 4.585 1 75.32 ? C7 P1Z 101 A 1 HETATM 13 C C21 P1Z . . . B 2 12.738 -0.699 -3.585 1 53.82 ? C21 P1Z 101 A 1 HETATM 14 C C20 P1Z . . . B 2 13.598 -1.298 -2.469 1 56.79 ? C20 P1Z 101 A 1 HETATM 15 C C19 P1Z . . . B 2 13.02 -0.866 -1.123 1 52.88 ? C19 P1Z 101 A 1 HETATM 16 C C18 P1Z . . . B 2 14.038 -1.01 0.013 1 58.91 ? C18 P1Z 101 A 1 HETATM 17 N N2 P1Z . . . B 2 14.852 0.622 3.11 1 71.75 ? N2 P1Z 101 A 1 HETATM 18 C C3 P1Z . . . B 2 15.294 0.456 1.69 1 68.27 ? C3 P1Z 101 A 1 HETATM 19 C C4 P1Z . . . B 2 14.067 0.33 0.844 1 58.13 ? C4 P1Z 101 A 1 HETATM 20 C C5 P1Z . . . B 2 12.893 0.401 1.737 1 49.6 ? C5 P1Z 101 A 1 HETATM 21 N N1 P1Z . . . B 2 13.329 0.579 3.116 1 61.11 ? N1 P1Z 101 A 1 HETATM 22 O O3 P1Z . . . B 2 16.418 0.448 1.295 1 66.49 ? O3 P1Z 101 A 1 HETATM 23 O O5 P1Z . . . B 2 11.772 0.345 1.434 1 53.7 ? O5 P1Z 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #