data_8HD3
#
_model_server_result.job_id            pQHZ8-H0dcFjiNjVa05nPg 
_model_server_result.datetime_utc      '2024-10-19 16:23:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8HD3 
#
_exptl.entry_id    8HD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.92 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3s,5s,7s)-adamantan-1-yl][4-(2-amino-5-chlorophenyl)piperazin-1-yl]methanone' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.324 
_cell.angle_gamma         90 
_cell.entry_id            8HD3 
_cell.length_a            161.032 
_cell.length_b            34.408 
_cell.length_c            110.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H28 Cl N3 O' 
_chem_comp.formula_weight    373.92 
_chem_comp.id                XAW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3s,5s,7s)-adamantan-1-yl][4-(2-amino-5-chlorophenyl)piperazin-1-yl]methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CLAA CAY XAW sing 376 n n 
CAG CAL XAW sing 377 n n 
CAG CAJ XAW sing 378 n n 
CAG CAN XAW sing 379 n n 
CAL CAF XAW sing 380 n n 
CAJ CAE XAW sing 381 n n 
CAN CAH XAW sing 382 n n 
CAV CAY XAW doub 383 n y 
CAV CAT XAW sing 384 n y 
CAY CAZ XAW sing 385 n y 
CAS NAD XAW sing 386 n n 
CAS CAQ XAW sing 387 n n 
CAF CAI XAW sing 388 n n 
CAF CAM XAW sing 389 n n 
NAD CAT XAW sing 390 n n 
NAD CAR XAW sing 391 n n 
CAT CAU XAW doub 392 n y 
CAE CAI XAW sing 393 n n 
CAE CAO XAW sing 394 n n 
CAE CAK XAW sing 395 n n 
CAR CAP XAW sing 396 n n 
CAZ CAW XAW doub 397 n y 
CAQ NAC XAW sing 398 n n 
CAH CAM XAW sing 399 n n 
CAH CAK XAW sing 400 n n 
CAO NAC XAW sing 401 n n 
CAO OAB XAW doub 402 n n 
NAC CAP XAW sing 403 n n 
CAU CAW XAW sing 404 n y 
CAU NAX XAW sing 405 n n 
CAF H1 XAW sing 406 n n 
CAG H2 XAW sing 407 n n 
CAH H3 XAW sing 408 n n 
CAI H4 XAW sing 409 n n 
CAI H5 XAW sing 410 n n 
CAJ H6 XAW sing 411 n n 
CAJ H7 XAW sing 412 n n 
CAK H8 XAW sing 413 n n 
CAK H9 XAW sing 414 n n 
CAL H10 XAW sing 415 n n 
CAL H11 XAW sing 416 n n 
CAM H12 XAW sing 417 n n 
CAM H13 XAW sing 418 n n 
CAN H14 XAW sing 419 n n 
CAN H15 XAW sing 420 n n 
CAP H16 XAW sing 421 n n 
CAP H17 XAW sing 422 n n 
CAQ H18 XAW sing 423 n n 
CAQ H19 XAW sing 424 n n 
CAR H20 XAW sing 425 n n 
CAR H21 XAW sing 426 n n 
CAS H22 XAW sing 427 n n 
CAS H23 XAW sing 428 n n 
CAV H24 XAW sing 429 n n 
CAW H25 XAW sing 430 n n 
CAZ H26 XAW sing 431 n n 
NAX H27 XAW sing 432 n n 
NAX H28 XAW sing 433 n n 
#
_atom_sites.entry_id                     8HD3 
_atom_sites.fract_transf_matrix[1][1]    0.00621 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000144 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XAW A 1 601 2 XAW DRG . 
D 2 XAW B 1 601 3 XAW DRG . 
E 3 HOH A 1 701 9 HOH HOH . 
E 3 HOH A 2 702 33 HOH HOH . 
E 3 HOH A 3 703 12 HOH HOH . 
E 3 HOH A 4 704 47 HOH HOH . 
E 3 HOH A 5 705 76 HOH HOH . 
E 3 HOH A 6 706 34 HOH HOH . 
E 3 HOH A 7 707 53 HOH HOH . 
E 3 HOH A 8 708 9 HOH HOH . 
F 3 HOH B 1 701 26 HOH HOH . 
F 3 HOH B 2 702 5 HOH HOH . 
F 3 HOH B 3 703 1 HOH HOH . 
F 3 HOH B 4 704 37 HOH HOH . 
F 3 HOH B 5 705 24 HOH HOH . 
F 3 HOH B 6 706 55 HOH HOH . 
F 3 HOH B 7 707 19 HOH HOH . 
F 3 HOH B 8 708 99 HOH HOH . 
F 3 HOH B 9 709 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAE XAW . . . D 2 -17.013 -3.424 15.057 1 42.14 ? CAE XAW 601 B 1 
HETATM 2 C CAF XAW . . . D 2 -19.234 -3.892 16.108 1 44.18 ? CAF XAW 601 B 1 
HETATM 3 C CAG XAW . . . D 2 -17.55 -5.718 15.846 1 43.03 ? CAG XAW 601 B 1 
HETATM 4 C CAH XAW . . . D 2 -17.151 -3.92 17.521 1 41.8 ? CAH XAW 601 B 1 
HETATM 5 C CAI XAW . . . D 2 -18.528 -3.065 15.002 1 38.4 ? CAI XAW 601 B 1 
HETATM 6 C CAJ XAW . . . D 2 -16.824 -4.903 14.79 1 37.79 ? CAJ XAW 601 B 1 
HETATM 7 C CAK XAW . . . D 2 -16.414 -3.082 16.453 1 42.78 ? CAK XAW 601 B 1 
HETATM 8 C CAL XAW . . . D 2 -19.03 -5.374 15.829 1 44.04 ? CAL XAW 601 B 1 
HETATM 9 C CAM XAW . . . D 2 -18.657 -3.527 17.507 1 41.23 ? CAM XAW 601 B 1 
HETATM 10 C CAN XAW . . . D 2 -16.989 -5.402 17.22 1 42.43 ? CAN XAW 601 B 1 
HETATM 11 C CAO XAW . . . D 2 -16.137 -2.719 14.013 1 42.42 ? CAO XAW 601 B 1 
HETATM 12 C CAP XAW . . . D 2 -16.785 -0.301 14.649 1 42.66 ? CAP XAW 601 B 1 
HETATM 13 C CAQ XAW . . . D 2 -15.098 -0.857 12.828 1 39.81 ? CAQ XAW 601 B 1 
HETATM 14 C CAR XAW . . . D 2 -15.916 0.809 15.188 1 39.61 ? CAR XAW 601 B 1 
HETATM 15 C CAS XAW . . . D 2 -14.655 0.596 12.967 1 42.53 ? CAS XAW 601 B 1 
HETATM 16 C CAT XAW . . . D 2 -14.691 2.727 14.196 1 42.78 ? CAT XAW 601 B 1 
HETATM 17 C CAU XAW . . . D 2 -15.546 3.725 14.216 1 42.92 ? CAU XAW 601 B 1 
HETATM 18 C CAV XAW . . . D 2 -13.192 2.985 14.26 1 40.27 ? CAV XAW 601 B 1 
HETATM 19 C CAW XAW . . . D 2 -15.006 5.148 14.301 1 48.1 ? CAW XAW 601 B 1 
HETATM 20 C CAY XAW . . . D 2 -12.722 4.216 14.331 1 43.48 ? CAY XAW 601 B 1 
HETATM 21 C CAZ XAW . . . D 2 -13.701 5.377 14.346 1 45.88 ? CAZ XAW 601 B 1 
HETATM 22 N NAC XAW . . . D 2 -16.021 -1.274 13.854 1 39.54 ? NAC XAW 601 B 1 
HETATM 23 N NAD XAW . . . D 2 -15.115 1.351 14.119 1 42.67 ? NAD XAW 601 B 1 
HETATM 24 N NAX XAW . . . D 2 -16.973 3.487 14.148 1 42.18 ? NAX XAW 601 B 1 
HETATM 25 O OAB XAW . . . D 2 -15.485 -3.391 13.295 1 41.32 ? OAB XAW 601 B 1 
HETATM 26 CL CLAA XAW . . . D 2 -10.949 4.477 14.407 1 50.85 ? CLAA XAW 601 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#