data_8HDD
#
_model_server_result.job_id            dGYjWobGSwEqL7OvBpaWZA 
_model_server_result.datetime_utc      '2024-12-04 21:41:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hdd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    8HDD 
#
_exptl.entry_id    8HDD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HDD 
_cell.length_a            204.015 
_cell.length_b            71.797 
_cell.length_c            114.221 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HDD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 213 A CYS 213 1_555 C SG CYS 105 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A NE2 HIS 105 A HIS 105 1_555 D C8M FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.69 ? 
covale ? covale2 B SG CYS 334 B CYS 334 1_555 F CAB HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
covale ? covale3 B SG CYS 337 B CYS 337 1_555 F CAC HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc1 A SG CYS 212 A CYS 212 1_555 E FE1 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A SG CYS 218 A CYS 218 1_555 E FE4 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc3 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc4 B NE2 HIS 338 B HIS 338 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc5 B SD MET 386 B MET 386 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 92 n n 
PA O2A FAD sing 93 n n 
PA O5B FAD sing 94 n n 
PA O3P FAD sing 95 n n 
O2A HOA2 FAD sing 96 n n 
O5B C5B FAD sing 97 n n 
C5B C4B FAD sing 98 n n 
C5B H51A FAD sing 99 n n 
C5B H52A FAD sing 100 n n 
C4B O4B FAD sing 101 n n 
C4B C3B FAD sing 102 n n 
C4B H4B FAD sing 103 n n 
O4B C1B FAD sing 104 n n 
C3B O3B FAD sing 105 n n 
C3B C2B FAD sing 106 n n 
C3B H3B FAD sing 107 n n 
O3B HO3A FAD sing 108 n n 
C2B O2B FAD sing 109 n n 
C2B C1B FAD sing 110 n n 
C2B H2B FAD sing 111 n n 
O2B HO2A FAD sing 112 n n 
C1B N9A FAD sing 113 n n 
C1B H1B FAD sing 114 n n 
N9A C8A FAD sing 115 n y 
N9A C4A FAD sing 116 n y 
C8A N7A FAD doub 117 n y 
C8A H8A FAD sing 118 n n 
N7A C5A FAD sing 119 n y 
C5A C6A FAD sing 120 n y 
C5A C4A FAD doub 121 n y 
C6A N6A FAD sing 122 n n 
C6A N1A FAD doub 123 n y 
N6A H61A FAD sing 124 n n 
N6A H62A FAD sing 125 n n 
N1A C2A FAD sing 126 n y 
C2A N3A FAD doub 127 n y 
C2A H2A FAD sing 128 n n 
N3A C4A FAD sing 129 n y 
N1 C2 FAD sing 130 n n 
N1 C10 FAD doub 131 n n 
C2 O2 FAD doub 132 n n 
C2 N3 FAD sing 133 n n 
N3 C4 FAD sing 134 n n 
N3 HN3 FAD sing 135 n n 
C4 O4 FAD doub 136 n n 
C4 C4X FAD sing 137 n n 
C4X N5 FAD doub 138 n n 
C4X C10 FAD sing 139 n n 
N5 C5X FAD sing 140 n n 
C5X C6 FAD doub 141 n y 
C5X C9A FAD sing 142 n y 
C6 C7 FAD sing 143 n y 
C6 H6 FAD sing 144 n n 
C7 C7M FAD sing 145 n n 
C7 C8 FAD doub 146 n y 
C7M HM71 FAD sing 147 n n 
C7M HM72 FAD sing 148 n n 
C7M HM73 FAD sing 149 n n 
C8 C8M FAD sing 150 n n 
C8 C9 FAD sing 151 n y 
C8M HM81 FAD sing 152 n n 
C8M HM82 FAD sing 153 n n 
C8M HM83 FAD sing 154 n n 
C9 C9A FAD doub 155 n y 
C9 H9 FAD sing 156 n n 
C9A N10 FAD sing 157 n n 
N10 C10 FAD sing 158 n n 
N10 C1' FAD sing 159 n n 
C1' C2' FAD sing 160 n n 
C1' "H1'1" FAD sing 161 n n 
C1' "H1'2" FAD sing 162 n n 
C2' O2' FAD sing 163 n n 
C2' C3' FAD sing 164 n n 
C2' H2' FAD sing 165 n n 
O2' HO2' FAD sing 166 n n 
C3' O3' FAD sing 167 n n 
C3' C4' FAD sing 168 n n 
C3' H3' FAD sing 169 n n 
O3' HO3' FAD sing 170 n n 
C4' O4' FAD sing 171 n n 
C4' C5' FAD sing 172 n n 
C4' H4' FAD sing 173 n n 
O4' HO4' FAD sing 174 n n 
C5' O5' FAD sing 175 n n 
C5' "H5'1" FAD sing 176 n n 
C5' "H5'2" FAD sing 177 n n 
O5' P FAD sing 178 n n 
P O1P FAD doub 179 n n 
P O2P FAD sing 180 n n 
P O3P FAD sing 181 n n 
O2P HOP2 FAD sing 182 n n 
#
_atom_sites.entry_id                     8HDD 
_atom_sites.fract_transf_matrix[1][1]    0.004902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 701 701 FAD FAD . 
E 5 F3S A 1 702 702 F3S F3S . 
F 6 HEM B 1 501 1003 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 -26.394 18.716 2.486 1 73.54 ? PA FAD 701 A 1 
HETATM 2 O O1A FAD . . . D 4 -27.047 20.003 2.871 1 74.64 ? O1A FAD 701 A 1 
HETATM 3 O O2A FAD . . . D 4 -25.757 18.614 1.139 1 68.55 ? O2A FAD 701 A 1 
HETATM 4 O O5B FAD . . . D 4 -25.34 18.294 3.619 1 72.45 ? O5B FAD 701 A 1 
HETATM 5 C C5B FAD . . . D 4 -24.564 17.085 3.422 1 74.11 ? C5B FAD 701 A 1 
HETATM 6 C C4B FAD . . . D 4 -23.714 16.827 4.642 1 73.19 ? C4B FAD 701 A 1 
HETATM 7 O O4B FAD . . . D 4 -23.143 15.496 4.547 1 72.89 ? O4B FAD 701 A 1 
HETATM 8 C C3B FAD . . . D 4 -22.525 17.777 4.845 1 69.79 ? C3B FAD 701 A 1 
HETATM 9 O O3B FAD . . . D 4 -22.36 18.089 6.222 1 69.74 ? O3B FAD 701 A 1 
HETATM 10 C C2B FAD . . . D 4 -21.34 16.965 4.315 1 68.69 ? C2B FAD 701 A 1 
HETATM 11 O O2B FAD . . . D 4 -20.115 17.356 4.896 1 61.47 ? O2B FAD 701 A 1 
HETATM 12 C C1B FAD . . . D 4 -21.75 15.561 4.746 1 69.95 ? C1B FAD 701 A 1 
HETATM 13 N N9A FAD . . . D 4 -21.129 14.483 3.986 1 67.72 ? N9A FAD 701 A 1 
HETATM 14 C C8A FAD . . . D 4 -21.162 14.279 2.626 1 66.38 ? C8A FAD 701 A 1 
HETATM 15 N N7A FAD . . . D 4 -20.497 13.207 2.262 1 63.71 ? N7A FAD 701 A 1 
HETATM 16 C C5A FAD . . . D 4 -20.004 12.679 3.449 1 64.5 ? C5A FAD 701 A 1 
HETATM 17 C C6A FAD . . . D 4 -19.221 11.544 3.735 1 62.79 ? C6A FAD 701 A 1 
HETATM 18 N N6A FAD . . . D 4 -18.78 10.699 2.808 1 58.54 ? N6A FAD 701 A 1 
HETATM 19 N N1A FAD . . . D 4 -18.912 11.314 5.034 1 63.87 ? N1A FAD 701 A 1 
HETATM 20 C C2A FAD . . . D 4 -19.361 12.168 5.963 1 63.75 ? C2A FAD 701 A 1 
HETATM 21 N N3A FAD . . . D 4 -20.102 13.263 5.812 1 63.59 ? N3A FAD 701 A 1 
HETATM 22 C C4A FAD . . . D 4 -20.39 13.461 4.516 1 65.46 ? C4A FAD 701 A 1 
HETATM 23 N N1 FAD . . . D 4 -32.814 24.105 -1.751 1 90.55 ? N1 FAD 701 A 1 
HETATM 24 C C2 FAD . . . D 4 -34.039 24.643 -1.54 1 87.48 ? C2 FAD 701 A 1 
HETATM 25 O O2 FAD . . . D 4 -34.958 23.964 -1.078 1 91.62 ? O2 FAD 701 A 1 
HETATM 26 N N3 FAD . . . D 4 -34.319 25.938 -1.833 1 85.29 ? N3 FAD 701 A 1 
HETATM 27 C C4 FAD . . . D 4 -33.374 26.783 -2.357 1 87.21 ? C4 FAD 701 A 1 
HETATM 28 O O4 FAD . . . D 4 -33.668 27.944 -2.608 1 82.48 ? O4 FAD 701 A 1 
HETATM 29 C C4X FAD . . . D 4 -32.084 26.266 -2.58 1 88.3 ? C4X FAD 701 A 1 
HETATM 30 N N5 FAD . . . D 4 -31.175 27.063 -3.077 1 83.11 ? N5 FAD 701 A 1 
HETATM 31 C C5X FAD . . . D 4 -29.926 26.544 -3.278 1 82.22 ? C5X FAD 701 A 1 
HETATM 32 C C6 FAD . . . D 4 -28.937 27.394 -3.8 1 80.74 ? C6 FAD 701 A 1 
HETATM 33 C C7 FAD . . . D 4 -27.656 26.954 -4.025 1 82.56 ? C7 FAD 701 A 1 
HETATM 34 C C7M FAD . . . D 4 -26.622 27.892 -4.59 1 79.07 ? C7M FAD 701 A 1 
HETATM 35 C C8 FAD . . . D 4 -27.321 25.612 -3.725 1 82.79 ? C8 FAD 701 A 1 
HETATM 36 C C8M FAD . . . D 4 -25.914 25.12 -3.949 1 79.05 ? C8M FAD 701 A 1 
HETATM 37 C C9 FAD . . . D 4 -28.288 24.757 -3.223 1 87.87 ? C9 FAD 701 A 1 
HETATM 38 C C9A FAD . . . D 4 -29.6 25.204 -2.984 1 87.92 ? C9A FAD 701 A 1 
HETATM 39 N N10 FAD . . . D 4 -30.598 24.382 -2.462 1 91.37 ? N10 FAD 701 A 1 
HETATM 40 C C10 FAD . . . D 4 -31.873 24.881 -2.244 1 91.31 ? C10 FAD 701 A 1 
HETATM 41 C C1' FAD . . . D 4 -30.302 22.964 -2.177 1 90.19 ? C1' FAD 701 A 1 
HETATM 42 C C2' FAD . . . D 4 -30.088 22.667 -0.707 1 88.02 ? C2' FAD 701 A 1 
HETATM 43 O O2' FAD . . . D 4 -28.986 23.413 -0.202 1 89.43 ? O2' FAD 701 A 1 
HETATM 44 C C3' FAD . . . D 4 -29.835 21.168 -0.516 1 88.35 ? C3' FAD 701 A 1 
HETATM 45 O O3' FAD . . . D 4 -30.716 20.437 -1.366 1 85.7 ? O3' FAD 701 A 1 
HETATM 46 C C4' FAD . . . D 4 -30.018 20.69 0.926 1 87.43 ? C4' FAD 701 A 1 
HETATM 47 O O4' FAD . . . D 4 -29.292 21.552 1.804 1 86.99 ? O4' FAD 701 A 1 
HETATM 48 C C5' FAD . . . D 4 -29.553 19.268 1.139 1 87.58 ? C5' FAD 701 A 1 
HETATM 49 O O5' FAD . . . D 4 -29.459 19 2.569 1 82.5 ? O5' FAD 701 A 1 
HETATM 50 P P FAD . . . D 4 -28.997 17.549 3.079 1 78.75 ? P FAD 701 A 1 
HETATM 51 O O1P FAD . . . D 4 -29.05 17.527 4.571 1 76.55 ? O1P FAD 701 A 1 
HETATM 52 O O2P FAD . . . D 4 -29.738 16.506 2.309 1 76.16 ? O2P FAD 701 A 1 
HETATM 53 O O3P FAD . . . D 4 -27.464 17.535 2.62 1 72.2 ? O3P FAD 701 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           53 
#