data_8HDD # _model_server_result.job_id DGhXQWJAzubUva0Z9nq_kQ _model_server_result.datetime_utc '2024-12-04 09:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 8HDD # _exptl.entry_id 8HDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HDD _cell.length_a 204.015 _cell.length_b 71.797 _cell.length_c 114.221 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 213 A CYS 213 1_555 C SG CYS 105 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A NE2 HIS 105 A HIS 105 1_555 D C8M FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.69 ? covale ? covale2 B SG CYS 334 B CYS 334 1_555 F CAB HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale3 B SG CYS 337 B CYS 337 1_555 F CAC HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc1 A SG CYS 212 A CYS 212 1_555 E FE1 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 218 A CYS 218 1_555 E FE4 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 B NE2 HIS 338 B HIS 338 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 B SD MET 386 B MET 386 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 8HDD _atom_sites.fract_transf_matrix[1][1] 0.004902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 701 701 FAD FAD . E 5 F3S A 1 702 702 F3S F3S . F 6 HEM B 1 501 1003 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . E 5 -32.474 39.066 3.937 1 72.98 ? FE1 F3S 702 A 1 HETATM 2 FE FE3 F3S . . . E 5 -29.873 38.099 5.073 1 69.25 ? FE3 F3S 702 A 1 HETATM 3 FE FE4 F3S . . . E 5 -30.612 37.359 2.19 1 63.91 ? FE4 F3S 702 A 1 HETATM 4 S S1 F3S . . . E 5 -31.479 39.38 5.876 1 68.44 ? S1 F3S 702 A 1 HETATM 5 S S2 F3S . . . E 5 -32.244 38.773 1.757 1 69.59 ? S2 F3S 702 A 1 HETATM 6 S S3 F3S . . . E 5 -31.575 37.073 4.14 1 57.3 ? S3 F3S 702 A 1 HETATM 7 S S4 F3S . . . E 5 -28.768 37.191 3.382 1 64.46 ? S4 F3S 702 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #