data_8HDF # _model_server_result.job_id vq97twOJz7e8FI1Fycbg4w _model_server_result.datetime_utc '2024-10-19 12:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8HDF # _exptl.entry_id 8HDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HDF _cell.length_a 72.837 _cell.length_b 72.837 _cell.length_c 457.908 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8HDF _atom_sites.fract_transf_matrix[1][1] 0.013729 _atom_sites.fract_transf_matrix[1][2] 0.007927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 601 602 PLM PLM . C 3 ANP A 1 602 603 ANP ANP . D 4 HOH A 1 701 50 HOH HOH . D 4 HOH A 2 702 58 HOH HOH . D 4 HOH A 3 703 88 HOH HOH . D 4 HOH A 4 704 70 HOH HOH . D 4 HOH A 5 705 36 HOH HOH . D 4 HOH A 6 706 27 HOH HOH . D 4 HOH A 7 707 53 HOH HOH . D 4 HOH A 8 708 1 HOH HOH . D 4 HOH A 9 709 3 HOH HOH . D 4 HOH A 10 710 20 HOH HOH . D 4 HOH A 11 711 92 HOH HOH . D 4 HOH A 12 712 25 HOH HOH . D 4 HOH A 13 713 7 HOH HOH . D 4 HOH A 14 714 55 HOH HOH . D 4 HOH A 15 715 4 HOH HOH . D 4 HOH A 16 716 11 HOH HOH . D 4 HOH A 17 717 10 HOH HOH . D 4 HOH A 18 718 5 HOH HOH . D 4 HOH A 19 719 35 HOH HOH . D 4 HOH A 20 720 12 HOH HOH . D 4 HOH A 21 721 6 HOH HOH . D 4 HOH A 22 722 14 HOH HOH . D 4 HOH A 23 723 28 HOH HOH . D 4 HOH A 24 724 30 HOH HOH . D 4 HOH A 25 725 18 HOH HOH . D 4 HOH A 26 726 91 HOH HOH . D 4 HOH A 27 727 65 HOH HOH . D 4 HOH A 28 728 8 HOH HOH . D 4 HOH A 29 729 13 HOH HOH . D 4 HOH A 30 730 103 HOH HOH . D 4 HOH A 31 731 32 HOH HOH . D 4 HOH A 32 732 34 HOH HOH . D 4 HOH A 33 733 40 HOH HOH . D 4 HOH A 34 734 59 HOH HOH . D 4 HOH A 35 735 48 HOH HOH . D 4 HOH A 36 736 56 HOH HOH . D 4 HOH A 37 737 17 HOH HOH . D 4 HOH A 38 738 9 HOH HOH . D 4 HOH A 39 739 31 HOH HOH . D 4 HOH A 40 740 24 HOH HOH . D 4 HOH A 41 741 66 HOH HOH . D 4 HOH A 42 742 47 HOH HOH . D 4 HOH A 43 743 15 HOH HOH . D 4 HOH A 44 744 80 HOH HOH . D 4 HOH A 45 745 42 HOH HOH . D 4 HOH A 46 746 60 HOH HOH . D 4 HOH A 47 747 77 HOH HOH . D 4 HOH A 48 748 37 HOH HOH . D 4 HOH A 49 749 49 HOH HOH . D 4 HOH A 50 750 39 HOH HOH . D 4 HOH A 51 751 22 HOH HOH . D 4 HOH A 52 752 38 HOH HOH . D 4 HOH A 53 753 45 HOH HOH . D 4 HOH A 54 754 85 HOH HOH . D 4 HOH A 55 755 93 HOH HOH . D 4 HOH A 56 756 61 HOH HOH . D 4 HOH A 57 757 75 HOH HOH . D 4 HOH A 58 758 104 HOH HOH . D 4 HOH A 59 759 94 HOH HOH . D 4 HOH A 60 760 57 HOH HOH . D 4 HOH A 61 761 16 HOH HOH . D 4 HOH A 62 762 2 HOH HOH . D 4 HOH A 63 763 46 HOH HOH . D 4 HOH A 64 764 23 HOH HOH . D 4 HOH A 65 765 19 HOH HOH . D 4 HOH A 66 766 105 HOH HOH . D 4 HOH A 67 767 84 HOH HOH . D 4 HOH A 68 768 52 HOH HOH . D 4 HOH A 69 769 41 HOH HOH . D 4 HOH A 70 770 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 40.749 42.039 209.758 0.36 74.39 ? PG ANP 602 A 1 HETATM 2 O O1G ANP . . . C 3 41.903 42.539 209.047 1 77.16 ? O1G ANP 602 A 1 HETATM 3 O O2G ANP . . . C 3 40.238 43.069 210.707 1 70.66 ? O2G ANP 602 A 1 HETATM 4 O O3G ANP . . . C 3 39.674 41.796 208.788 1 71.56 ? O3G ANP 602 A 1 HETATM 5 P PB ANP . . . C 3 42.594 39.645 210.426 0.3 71.34 ? PB ANP 602 A 1 HETATM 6 O O1B ANP . . . C 3 42.182 38.391 209.72 1 77.84 ? O1B ANP 602 A 1 HETATM 7 O O2B ANP . . . C 3 43.574 40.414 209.639 1 79.06 ? O2B ANP 602 A 1 HETATM 8 N N3B ANP . . . C 3 41.154 40.553 210.675 0.8 71.37 ? N3B ANP 602 A 1 HETATM 9 P PA ANP . . . C 3 42.429 38.484 213.007 0.35 64.14 ? PA ANP 602 A 1 HETATM 10 O O1A ANP . . . C 3 43.043 38.366 214.409 1 50.78 ? O1A ANP 602 A 1 HETATM 11 O O2A ANP . . . C 3 42.022 37.148 212.54 1 69.98 ? O2A ANP 602 A 1 HETATM 12 O O3A ANP . . . C 3 43.313 39.207 211.844 1 64.28 ? O3A ANP 602 A 1 HETATM 13 O O5' ANP . . . C 3 41.158 39.503 213.263 0.52 60.13 ? O5' ANP 602 A 1 HETATM 14 C C5' ANP . . . C 3 41.474 40.583 214.178 1 49.15 ? C5' ANP 602 A 1 HETATM 15 C C4' ANP . . . C 3 40.902 41.862 213.678 1 54.96 ? C4' ANP 602 A 1 HETATM 16 O O4' ANP . . . C 3 39.727 41.672 213.171 1 58.2 ? O4' ANP 602 A 1 HETATM 17 C C3' ANP . . . C 3 40.629 42.89 214.913 1 48.36 ? C3' ANP 602 A 1 HETATM 18 O O3' ANP . . . C 3 41.682 43.594 215.14 1 46.61 ? O3' ANP 602 A 1 HETATM 19 C C2' ANP . . . C 3 39.622 43.842 214.275 1 53.84 ? C2' ANP 602 A 1 HETATM 20 O O2' ANP . . . C 3 40.377 44.691 213.301 1 56.75 ? O2' ANP 602 A 1 HETATM 21 C C1' ANP . . . C 3 38.811 43.035 213.565 1 53.66 ? C1' ANP 602 A 1 HETATM 22 N N9 ANP . . . C 3 37.648 42.715 214.256 1 47.81 ? N9 ANP 602 A 1 HETATM 23 C C8 ANP . . . C 3 37.356 41.561 214.842 1 47.74 ? C8 ANP 602 A 1 HETATM 24 N N7 ANP . . . C 3 36.131 41.599 215.367 1 43.87 ? N7 ANP 602 A 1 HETATM 25 C C5 ANP . . . C 3 35.603 42.819 215.098 1 45.71 ? C5 ANP 602 A 1 HETATM 26 C C6 ANP . . . C 3 34.374 43.48 215.375 1 41.88 ? C6 ANP 602 A 1 HETATM 27 N N6 ANP . . . C 3 33.351 42.815 216.118 1 46.24 ? N6 ANP 602 A 1 HETATM 28 N N1 ANP . . . C 3 34.181 44.731 214.966 1 45.24 ? N1 ANP 602 A 1 HETATM 29 C C2 ANP . . . C 3 35.152 45.391 214.288 1 48.9 ? C2 ANP 602 A 1 HETATM 30 N N3 ANP . . . C 3 36.303 44.806 214.008 1 47.45 ? N3 ANP 602 A 1 HETATM 31 C C4 ANP . . . C 3 36.566 43.518 214.401 1 45.31 ? C4 ANP 602 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #