data_8HDG # _model_server_result.job_id Vsu0NrAO4Oh96be54C93Hg _model_server_result.datetime_utc '2025-01-10 15:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 8HDG # _exptl.entry_id 8HDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.053 _cell.angle_gamma 90 _cell.entry_id 8HDG _cell.length_a 47.844 _cell.length_b 47.879 _cell.length_c 92.233 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,O 3 1 D,J,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C12 H24 O6' _chem_comp.formula_weight 264.315 _chem_comp.id O4B _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAM O4B sing 311 n n CAA CAB O4B sing 312 n n OAM CAC O4B sing 313 n n CAC CAD O4B sing 314 n n CAD OAO O4B sing 315 n n OAO CAG O4B sing 316 n n CAG CAH O4B sing 317 n n CAH OAQ O4B sing 318 n n OAQ CAK O4B sing 319 n n CAK CAL O4B sing 320 n n CAL OAR O4B sing 321 n n OAR CAJ O4B sing 322 n n CAJ CAI O4B sing 323 n n CAI OAP O4B sing 324 n n OAP CAF O4B sing 325 n n CAF CAE O4B sing 326 n n CAE OAN O4B sing 327 n n OAN CAB O4B sing 328 n n CAA HAA1 O4B sing 329 n n CAA HAA2 O4B sing 330 n n CAB HAB1 O4B sing 331 n n CAB HAB2 O4B sing 332 n n CAC HAC1 O4B sing 333 n n CAC HAC2 O4B sing 334 n n CAD HAD1 O4B sing 335 n n CAD HAD2 O4B sing 336 n n CAG HAG1 O4B sing 337 n n CAG HAG2 O4B sing 338 n n CAH HAH1 O4B sing 339 n n CAH HAH2 O4B sing 340 n n CAK HAK1 O4B sing 341 n n CAK HAK2 O4B sing 342 n n CAL HAL1 O4B sing 343 n n CAL HAL2 O4B sing 344 n n CAJ HAJ1 O4B sing 345 n n CAJ HAJ2 O4B sing 346 n n CAI HAI1 O4B sing 347 n n CAI HAI2 O4B sing 348 n n CAF HAF1 O4B sing 349 n n CAF HAF2 O4B sing 350 n n CAE HAE1 O4B sing 351 n n CAE HAE2 O4B sing 352 n n # _atom_sites.entry_id 8HDG _atom_sites.fract_transf_matrix[1][1] 0.020901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NUT D 1 201 1 NUT NUT . F 3 O4B D 1 202 8 O4B O4B . G 2 NUT A 1 201 3 NUT NUT . H 3 O4B A 1 202 7 O4B O4B . I 2 NUT C 1 201 4 NUT NUT . J 2 NUT B 1 201 2 NUT NUT . K 3 O4B B 1 202 5 O4B O4B . L 3 O4B B 1 203 6 O4B O4B . M 4 HOH D 1 301 36 HOH HOH . M 4 HOH D 2 302 54 HOH HOH . M 4 HOH D 3 303 24 HOH HOH . M 4 HOH D 4 304 57 HOH HOH . M 4 HOH D 5 305 65 HOH HOH . M 4 HOH D 6 306 77 HOH HOH . M 4 HOH D 7 307 80 HOH HOH . M 4 HOH D 8 308 83 HOH HOH . M 4 HOH D 9 309 81 HOH HOH . M 4 HOH D 10 310 6 HOH HOH . M 4 HOH D 11 311 90 HOH HOH . M 4 HOH D 12 312 74 HOH HOH . M 4 HOH D 13 313 43 HOH HOH . M 4 HOH D 14 314 19 HOH HOH . M 4 HOH D 15 315 37 HOH HOH . M 4 HOH D 16 316 23 HOH HOH . M 4 HOH D 17 317 14 HOH HOH . M 4 HOH D 18 318 48 HOH HOH . M 4 HOH D 19 319 22 HOH HOH . M 4 HOH D 20 320 92 HOH HOH . M 4 HOH D 21 321 95 HOH HOH . M 4 HOH D 22 322 103 HOH HOH . M 4 HOH D 23 323 99 HOH HOH . M 4 HOH D 24 324 110 HOH HOH . M 4 HOH D 25 325 63 HOH HOH . M 4 HOH D 26 326 31 HOH HOH . N 4 HOH A 1 301 56 HOH HOH . N 4 HOH A 2 302 93 HOH HOH . N 4 HOH A 3 303 7 HOH HOH . N 4 HOH A 4 304 97 HOH HOH . N 4 HOH A 5 305 67 HOH HOH . N 4 HOH A 6 306 98 HOH HOH . N 4 HOH A 7 307 40 HOH HOH . N 4 HOH A 8 308 38 HOH HOH . N 4 HOH A 9 309 59 HOH HOH . N 4 HOH A 10 310 75 HOH HOH . N 4 HOH A 11 311 79 HOH HOH . N 4 HOH A 12 312 3 HOH HOH . N 4 HOH A 13 313 25 HOH HOH . N 4 HOH A 14 314 107 HOH HOH . N 4 HOH A 15 315 10 HOH HOH . N 4 HOH A 16 316 2 HOH HOH . N 4 HOH A 17 317 88 HOH HOH . N 4 HOH A 18 318 35 HOH HOH . N 4 HOH A 19 319 72 HOH HOH . N 4 HOH A 20 320 51 HOH HOH . N 4 HOH A 21 321 20 HOH HOH . N 4 HOH A 22 322 89 HOH HOH . N 4 HOH A 23 323 87 HOH HOH . N 4 HOH A 24 324 27 HOH HOH . N 4 HOH A 25 325 49 HOH HOH . N 4 HOH A 26 326 84 HOH HOH . N 4 HOH A 27 327 111 HOH HOH . N 4 HOH A 28 328 58 HOH HOH . N 4 HOH A 29 329 17 HOH HOH . O 4 HOH C 1 301 96 HOH HOH . O 4 HOH C 2 302 42 HOH HOH . O 4 HOH C 3 303 73 HOH HOH . O 4 HOH C 4 304 61 HOH HOH . O 4 HOH C 5 305 47 HOH HOH . O 4 HOH C 6 306 66 HOH HOH . O 4 HOH C 7 307 53 HOH HOH . O 4 HOH C 8 308 50 HOH HOH . O 4 HOH C 9 309 82 HOH HOH . O 4 HOH C 10 310 29 HOH HOH . O 4 HOH C 11 311 85 HOH HOH . O 4 HOH C 12 312 94 HOH HOH . O 4 HOH C 13 313 8 HOH HOH . O 4 HOH C 14 314 12 HOH HOH . O 4 HOH C 15 315 15 HOH HOH . O 4 HOH C 16 316 18 HOH HOH . O 4 HOH C 17 317 33 HOH HOH . O 4 HOH C 18 318 101 HOH HOH . O 4 HOH C 19 319 32 HOH HOH . O 4 HOH C 20 320 104 HOH HOH . O 4 HOH C 21 321 16 HOH HOH . O 4 HOH C 22 322 1 HOH HOH . O 4 HOH C 23 323 5 HOH HOH . O 4 HOH C 24 324 105 HOH HOH . O 4 HOH C 25 325 69 HOH HOH . O 4 HOH C 26 326 13 HOH HOH . P 4 HOH B 1 301 46 HOH HOH . P 4 HOH B 2 302 68 HOH HOH . P 4 HOH B 3 303 60 HOH HOH . P 4 HOH B 4 304 44 HOH HOH . P 4 HOH B 5 305 100 HOH HOH . P 4 HOH B 6 306 30 HOH HOH . P 4 HOH B 7 307 26 HOH HOH . P 4 HOH B 8 308 86 HOH HOH . P 4 HOH B 9 309 70 HOH HOH . P 4 HOH B 10 310 45 HOH HOH . P 4 HOH B 11 311 78 HOH HOH . P 4 HOH B 12 312 9 HOH HOH . P 4 HOH B 13 313 55 HOH HOH . P 4 HOH B 14 314 28 HOH HOH . P 4 HOH B 15 315 21 HOH HOH . P 4 HOH B 16 316 64 HOH HOH . P 4 HOH B 17 317 4 HOH HOH . P 4 HOH B 18 318 91 HOH HOH . P 4 HOH B 19 319 102 HOH HOH . P 4 HOH B 20 320 71 HOH HOH . P 4 HOH B 21 321 62 HOH HOH . P 4 HOH B 22 322 11 HOH HOH . P 4 HOH B 23 323 108 HOH HOH . P 4 HOH B 24 324 41 HOH HOH . P 4 HOH B 25 325 34 HOH HOH . P 4 HOH B 26 326 52 HOH HOH . P 4 HOH B 27 327 109 HOH HOH . P 4 HOH B 28 328 76 HOH HOH . P 4 HOH B 29 329 106 HOH HOH . P 4 HOH B 30 330 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA O4B . . . K 3 13.233 1.041 2.405 1 28.44 0 CAA O4B 202 B 1 HETATM 2 O OAM O4B . . . K 3 13.047 1.936 1.317 1 26.94 0 OAM O4B 202 B 1 HETATM 3 C CAC O4B . . . K 3 13.735 1.551 0.131 1 29.4 0 CAC O4B 202 B 1 HETATM 4 C CAD O4B . . . K 3 12.782 1.145 -0.955 1 32.61 0 CAD O4B 202 B 1 HETATM 5 O OAO O4B . . . K 3 11.762 2.122 -1.086 1 29.74 0 OAO O4B 202 B 1 HETATM 6 C CAG O4B . . . K 3 10.838 1.835 -2.123 1 31.06 0 CAG O4B 202 B 1 HETATM 7 C CAH O4B . . . K 3 9.961 3.011 -2.266 1 29.35 0 CAH O4B 202 B 1 HETATM 8 O OAQ O4B . . . K 3 9.185 3.189 -1.096 1 27.49 0 OAQ O4B 202 B 1 HETATM 9 C CAK O4B . . . K 3 8.038 4.007 -1.299 1 27.99 0 CAK O4B 202 B 1 HETATM 10 C CAL O4B . . . K 3 7.376 4.368 -0.03 1 27.39 0 CAL O4B 202 B 1 HETATM 11 O OAR O4B . . . K 3 8.34 5.011 0.788 1 31.64 0 OAR O4B 202 B 1 HETATM 12 C CAJ O4B . . . K 3 7.864 5.545 2.02 1 31.62 0 CAJ O4B 202 B 1 HETATM 13 C CAI O4B . . . K 3 8.058 4.608 3.203 1 30.13 0 CAI O4B 202 B 1 HETATM 14 O OAP O4B . . . K 3 9.378 4.074 3.311 1 31.65 0 OAP O4B 202 B 1 HETATM 15 C CAF O4B . . . K 3 9.497 3.128 4.379 1 28.77 0 CAF O4B 202 B 1 HETATM 16 C CAE O4B . . . K 3 10.904 2.725 4.662 1 27.5 0 CAE O4B 202 B 1 HETATM 17 O OAN O4B . . . K 3 11.465 2.084 3.537 1 25.54 0 OAN O4B 202 B 1 HETATM 18 C CAB O4B . . . K 3 12.826 1.717 3.64 1 26.53 0 CAB O4B 202 B 1 HETATM 19 H HAA1 O4B . . . K 3 12.691 0.233 2.27 1 27.63 0 HAA1 O4B 202 B 1 HETATM 20 H HAA2 O4B . . . K 3 14.177 0.777 2.466 1 27.63 0 HAA2 O4B 202 B 1 HETATM 21 H HAB1 O4B . . . K 3 13.376 2.517 3.78 1 26.73 0 HAB1 O4B 202 B 1 HETATM 22 H HAB2 O4B . . . K 3 12.952 1.117 4.407 1 26.72 0 HAB2 O4B 202 B 1 HETATM 23 H HAC1 O4B . . . K 3 14.339 0.802 0.328 1 29.51 0 HAC1 O4B 202 B 1 HETATM 24 H HAC2 O4B . . . K 3 14.282 2.303 -0.183 1 29.51 0 HAC2 O4B 202 B 1 HETATM 25 H HAD1 O4B . . . K 3 12.381 0.276 -0.736 1 31.14 0 HAD1 O4B 202 B 1 HETATM 26 H HAD2 O4B . . . K 3 13.267 1.056 -1.804 1 31.14 0 HAD2 O4B 202 B 1 HETATM 27 H HAG1 O4B . . . K 3 10.307 1.042 -1.893 1 30.34 0 HAG1 O4B 202 B 1 HETATM 28 H HAG2 O4B . . . K 3 11.314 1.664 -2.964 1 30.34 0 HAG2 O4B 202 B 1 HETATM 29 H HAH1 O4B . . . K 3 9.369 2.888 -3.04 1 29.28 0 HAH1 O4B 202 B 1 HETATM 30 H HAH2 O4B . . . K 3 10.506 3.812 -2.423 1 29.29 0 HAH2 O4B 202 B 1 HETATM 31 H HAK1 O4B . . . K 3 7.398 3.527 -1.869 1 27.71 0 HAK1 O4B 202 B 1 HETATM 32 H HAK2 O4B . . . K 3 8.302 4.825 -1.77 1 27.7 0 HAK2 O4B 202 B 1 HETATM 33 H HAL1 O4B . . . K 3 7.037 3.562 0.416 1 28.48 0 HAL1 O4B 202 B 1 HETATM 34 H HAL2 O4B . . . K 3 6.622 4.973 -0.204 1 28.49 0 HAL2 O4B 202 B 1 HETATM 35 H HAJ1 O4B . . . K 3 6.908 5.752 1.932 1 31.25 0 HAJ1 O4B 202 B 1 HETATM 36 H HAJ2 O4B . . . K 3 8.333 6.389 2.203 1 31.27 0 HAJ2 O4B 202 B 1 HETATM 37 H HAI1 O4B . . . K 3 7.421 3.865 3.125 1 30.83 0 HAI1 O4B 202 B 1 HETATM 38 H HAI2 O4B . . . K 3 7.845 5.094 4.029 1 30.82 0 HAI2 O4B 202 B 1 HETATM 39 H HAF1 O4B . . . K 3 8.976 2.327 4.155 1 29.11 0 HAF1 O4B 202 B 1 HETATM 40 H HAF2 O4B . . . K 3 9.109 3.515 5.194 1 29.12 0 HAF2 O4B 202 B 1 HETATM 41 H HAE1 O4B . . . K 3 10.926 2.119 5.431 1 27.33 0 HAE1 O4B 202 B 1 HETATM 42 H HAE2 O4B . . . K 3 11.435 3.52 4.884 1 27.32 0 HAE2 O4B 202 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #