data_8HDH # _model_server_result.job_id V4pAJv3RFDHCFRdDU53k8Q _model_server_result.datetime_utc '2025-03-11 11:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8HDH # _exptl.entry_id 8HDH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 444.516 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},3~{R},4~{R},5~{S},6~{R})-2-[3-[[5-(4-fluorophenyl)thiophen-2-yl]methyl]-4-methyl-phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HDH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 259 A CYS 255 1_555 A SG CYS 515 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? disulf ? disulf2 A SG CYS 349 A CYS 345 1_555 A SG CYS 355 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? disulf ? disulf3 A SG CYS 359 A CYS 355 1_555 A SG CYS 365 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? disulf ? disulf4 A SG CYS 521 A CYS 517 1_555 A SG CYS 526 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc1 A O ALA 77 A ALA 73 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A O ILE 80 A ILE 76 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A O ALA 393 A ALA 389 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc4 A OG SER 396 A SER 392 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A OG SER 397 A SER 393 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C24 H25 F O5 S' _chem_comp.formula_weight 444.516 _chem_comp.id L3R _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},3~{R},4~{R},5~{S},6~{R})-2-[3-[[5-(4-fluorophenyl)thiophen-2-yl]methyl]-4-methyl-phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Canagliflozin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C12 L3R sing 173 n n O2 C14 L3R sing 174 n n C12 C14 L3R sing 175 n n C12 C13 L3R sing 176 n n O4 C13 L3R sing 177 n n C14 C15 L3R sing 178 n n C13 C9 L3R sing 179 n n C15 C16 L3R sing 180 n n C15 O1 L3R sing 181 n n C9 O1 L3R sing 182 n n C9 C5 L3R sing 183 n n C16 O5 L3R sing 184 n n C5 C4 L3R doub 185 n y C5 C6 L3R sing 186 n y C4 C3 L3R sing 187 n y C6 C7 L3R doub 188 n y C3 C8 L3R doub 189 n y C7 C8 L3R sing 190 n y C7 C10 L3R sing 191 n n C8 C11 L3R sing 192 n n C10 C1 L3R sing 193 n n C1 S1 L3R sing 194 n y C1 C2 L3R doub 195 n y S1 C17 L3R sing 196 n y C2 C18 L3R sing 197 n y C17 C18 L3R doub 198 n y C17 C19 L3R sing 199 n n C20 C19 L3R doub 200 n y C20 C21 L3R sing 201 n y C19 C24 L3R sing 202 n y C21 C22 L3R doub 203 n y C24 C23 L3R doub 204 n y C22 C23 L3R sing 205 n y C22 F1 L3R sing 206 n n C9 H1 L3R sing 207 n n O5 H3 L3R sing 208 n n C6 H4 L3R sing 209 n n C4 H5 L3R sing 210 n n O4 H6 L3R sing 211 n n C3 H7 L3R sing 212 n n O3 H8 L3R sing 213 n n C2 H9 L3R sing 214 n n C10 H11 L3R sing 215 n n C10 H12 L3R sing 216 n n C11 H13 L3R sing 217 n n C11 H14 L3R sing 218 n n C11 H15 L3R sing 219 n n C12 H16 L3R sing 220 n n C13 H17 L3R sing 221 n n C14 H18 L3R sing 222 n n C15 H19 L3R sing 223 n n C16 H20 L3R sing 224 n n C16 H21 L3R sing 225 n n O2 H22 L3R sing 226 n n C18 H25 L3R sing 227 n n C20 H26 L3R sing 228 n n C21 H27 L3R sing 229 n n C23 H28 L3R sing 230 n n C24 H29 L3R sing 231 n n # _atom_sites.entry_id 8HDH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 L3R A 1 802 901 L3R XXX . E 5 NA A 1 803 1 NA NA . F 6 HOH A 1 901 1 HOH HOH . F 6 HOH A 2 902 3 HOH HOH . F 6 HOH A 3 903 4 HOH HOH . F 6 HOH A 4 904 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 L3R . . . D 4 62.77 59.309 69.527 1 86.59 ? C7 L3R 802 A 1 HETATM 2 C C8 L3R . . . D 4 63.965 60.023 69.805 1 94.25 ? C8 L3R 802 A 1 HETATM 3 C C9 L3R . . . D 4 61.589 61.081 66.354 1 72.47 ? C9 L3R 802 A 1 HETATM 4 O O1 L3R . . . D 4 60.816 62.2 66.834 1 69.36 ? O1 L3R 802 A 1 HETATM 5 C C1 L3R . . . D 4 61.989 58.628 71.777 1 79.03 ? C1 L3R 802 A 1 HETATM 6 O O5 L3R . . . D 4 60.141 65.183 66.587 1 61.31 ? O5 L3R 802 A 1 HETATM 7 C C5 L3R . . . D 4 62.409 60.693 67.555 1 77.25 ? C5 L3R 802 A 1 HETATM 8 C C6 L3R . . . D 4 62.015 59.674 68.416 1 77.48 ? C6 L3R 802 A 1 HETATM 9 C C4 L3R . . . D 4 63.584 61.377 67.832 1 67.64 ? C4 L3R 802 A 1 HETATM 10 O O4 L3R . . . D 4 61.392 58.822 65.201 1 41.78 ? O4 L3R 802 A 1 HETATM 11 C C3 L3R . . . D 4 64.353 61.046 68.943 1 87.4 ? C3 L3R 802 A 1 HETATM 12 O O3 L3R . . . D 4 59.073 59.724 64.047 1 50.25 ? O3 L3R 802 A 1 HETATM 13 C C2 L3R . . . D 4 62.528 58.238 72.947 1 65.65 ? C2 L3R 802 A 1 HETATM 14 S S1 L3R . . . D 4 60.805 59.853 71.946 1 59.68 ? S1 L3R 802 A 1 HETATM 15 C C10 L3R . . . D 4 62.27 58.179 70.406 1 90.02 ? C10 L3R 802 A 1 HETATM 16 C C11 L3R . . . D 4 64.85 59.701 70.981 1 88.55 ? C11 L3R 802 A 1 HETATM 17 C C12 L3R . . . D 4 59.935 60.681 64.615 1 50.36 ? C12 L3R 802 A 1 HETATM 18 C C13 L3R . . . D 4 60.703 59.98 65.717 1 60.81 ? C13 L3R 802 A 1 HETATM 19 C C14 L3R . . . D 4 59.118 61.816 65.21 1 66.62 ? C14 L3R 802 A 1 HETATM 20 C C15 L3R . . . D 4 60.021 62.837 65.821 1 65.56 ? C15 L3R 802 A 1 HETATM 21 C C16 L3R . . . D 4 59.271 63.992 66.461 1 67.91 ? C16 L3R 802 A 1 HETATM 22 O O2 L3R . . . D 4 58.356 62.452 64.227 1 71.65 ? O2 L3R 802 A 1 HETATM 23 C C17 L3R . . . D 4 60.813 59.663 73.653 1 77.49 ? C17 L3R 802 A 1 HETATM 24 C C18 L3R . . . D 4 61.75 58.713 74.031 1 83.51 ? C18 L3R 802 A 1 HETATM 25 C C19 L3R . . . D 4 59.87 60.423 74.47 1 78.42 ? C19 L3R 802 A 1 HETATM 26 C C20 L3R . . . D 4 58.725 61.004 73.904 1 81.52 ? C20 L3R 802 A 1 HETATM 27 C C21 L3R . . . D 4 57.815 61.705 74.679 1 74.84 ? C21 L3R 802 A 1 HETATM 28 C C22 L3R . . . D 4 58.047 61.818 76.016 1 82.1 ? C22 L3R 802 A 1 HETATM 29 C C23 L3R . . . D 4 59.14 61.255 76.621 1 80.36 ? C23 L3R 802 A 1 HETATM 30 C C24 L3R . . . D 4 60.055 60.561 75.84 1 74.23 ? C24 L3R 802 A 1 HETATM 31 F F1 L3R . . . D 4 57.134 62.51 76.751 1 111.15 ? F1 L3R 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #