data_8HDP # _model_server_result.job_id BX45YNpkc0yUBmcBB4Wohg _model_server_result.datetime_utc '2025-07-02 03:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":404}' # _entry.id 8HDP # _exptl.entry_id 8HDP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 E SG CYS 78 R CYS 78 1_555 E SG CYS 171 R CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 104 n n C1 C10 CLR sing 105 n n C1 H11 CLR sing 106 n n C1 H12 CLR sing 107 n n C2 C3 CLR sing 108 n n C2 H21 CLR sing 109 n n C2 H22 CLR sing 110 n n C3 C4 CLR sing 111 n n C3 O1 CLR sing 112 n n C3 H3 CLR sing 113 n n C4 C5 CLR sing 114 n n C4 H41 CLR sing 115 n n C4 H42 CLR sing 116 n n C5 C6 CLR doub 117 n n C5 C10 CLR sing 118 n n C6 C7 CLR sing 119 n n C6 H6 CLR sing 120 n n C7 C8 CLR sing 121 n n C7 H71 CLR sing 122 n n C7 H72 CLR sing 123 n n C8 C9 CLR sing 124 n n C8 C14 CLR sing 125 n n C8 H8 CLR sing 126 n n C9 C10 CLR sing 127 n n C9 C11 CLR sing 128 n n C9 H9 CLR sing 129 n n C10 C19 CLR sing 130 n n C11 C12 CLR sing 131 n n C11 H111 CLR sing 132 n n C11 H112 CLR sing 133 n n C12 C13 CLR sing 134 n n C12 H121 CLR sing 135 n n C12 H122 CLR sing 136 n n C13 C14 CLR sing 137 n n C13 C17 CLR sing 138 n n C13 C18 CLR sing 139 n n C14 C15 CLR sing 140 n n C14 H14 CLR sing 141 n n C15 C16 CLR sing 142 n n C15 H151 CLR sing 143 n n C15 H152 CLR sing 144 n n C16 C17 CLR sing 145 n n C16 H161 CLR sing 146 n n C16 H162 CLR sing 147 n n C17 C20 CLR sing 148 n n C17 H17 CLR sing 149 n n C18 H181 CLR sing 150 n n C18 H182 CLR sing 151 n n C18 H183 CLR sing 152 n n C19 H191 CLR sing 153 n n C19 H192 CLR sing 154 n n C19 H193 CLR sing 155 n n C20 C21 CLR sing 156 n n C20 C22 CLR sing 157 n n C20 H20 CLR sing 158 n n C21 H211 CLR sing 159 n n C21 H212 CLR sing 160 n n C21 H213 CLR sing 161 n n C22 C23 CLR sing 162 n n C22 H221 CLR sing 163 n n C22 H222 CLR sing 164 n n C23 C24 CLR sing 165 n n C23 H231 CLR sing 166 n n C23 H232 CLR sing 167 n n C24 C25 CLR sing 168 n n C24 H241 CLR sing 169 n n C24 H242 CLR sing 170 n n C25 C26 CLR sing 171 n n C25 C27 CLR sing 172 n n C25 H25 CLR sing 173 n n C26 H261 CLR sing 174 n n C26 H262 CLR sing 175 n n C26 H263 CLR sing 176 n n C27 H271 CLR sing 177 n n C27 H272 CLR sing 178 n n C27 H273 CLR sing 179 n n O1 H1 CLR sing 180 n n # _atom_sites.entry_id 8HDP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ADN R 1 401 401 ADN ADN . G 7 CLR R 1 402 402 CLR CLR . H 7 CLR R 1 403 404 CLR CLR . I 7 CLR R 1 404 405 CLR CLR . J 7 CLR R 1 405 408 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 7 121.291 91.573 104.162 1 20 ? C1 CLR 404 R 1 HETATM 2 C C2 CLR . . . I 7 120.357 91.311 105.334 1 20 ? C2 CLR 404 R 1 HETATM 3 C C3 CLR . . . I 7 118.982 91.866 105.021 1 20 ? C3 CLR 404 R 1 HETATM 4 C C4 CLR . . . I 7 118.409 90.967 103.945 1 20 ? C4 CLR 404 R 1 HETATM 5 C C5 CLR . . . I 7 119.315 90.949 102.739 1 20 ? C5 CLR 404 R 1 HETATM 6 C C6 CLR . . . I 7 118.733 90.912 101.54 1 20 ? C6 CLR 404 R 1 HETATM 7 C C7 CLR . . . I 7 119.297 91.698 100.393 1 20 ? C7 CLR 404 R 1 HETATM 8 C C8 CLR . . . I 7 120.794 91.468 100.367 1 20 ? C8 CLR 404 R 1 HETATM 9 C C9 CLR . . . I 7 121.448 91.756 101.717 1 20 ? C9 CLR 404 R 1 HETATM 10 C C10 CLR . . . I 7 120.826 90.948 102.853 1 20 ? C10 CLR 404 R 1 HETATM 11 C C11 CLR . . . I 7 122.966 91.527 101.685 1 20 ? C11 CLR 404 R 1 HETATM 12 C C12 CLR . . . I 7 123.71 92.102 100.473 1 20 ? C12 CLR 404 R 1 HETATM 13 C C13 CLR . . . I 7 122.884 91.93 99.189 1 20 ? C13 CLR 404 R 1 HETATM 14 C C14 CLR . . . I 7 121.43 92.335 99.305 1 20 ? C14 CLR 404 R 1 HETATM 15 C C15 CLR . . . I 7 120.86 92.141 97.915 1 20 ? C15 CLR 404 R 1 HETATM 16 C C16 CLR . . . I 7 122.036 92.106 96.942 1 20 ? C16 CLR 404 R 1 HETATM 17 C C17 CLR . . . I 7 123.333 91.897 97.722 1 20 ? C17 CLR 404 R 1 HETATM 18 C C18 CLR . . . I 7 123.293 93.38 98.993 1 20 ? C18 CLR 404 R 1 HETATM 19 C C19 CLR . . . I 7 121.321 89.507 102.786 1 20 ? C19 CLR 404 R 1 HETATM 20 C C20 CLR . . . I 7 124.027 90.63 97.228 1 20 ? C20 CLR 404 R 1 HETATM 21 C C21 CLR . . . I 7 125.486 90.523 97.657 1 20 ? C21 CLR 404 R 1 HETATM 22 C C22 CLR . . . I 7 123.95 90.571 95.706 1 20 ? C22 CLR 404 R 1 HETATM 23 C C23 CLR . . . I 7 125.089 91.37 95.07 1 20 ? C23 CLR 404 R 1 HETATM 24 C C24 CLR . . . I 7 124.647 92.032 93.768 1 20 ? C24 CLR 404 R 1 HETATM 25 C C25 CLR . . . I 7 124.486 93.544 93.899 1 20 ? C25 CLR 404 R 1 HETATM 26 C C26 CLR . . . I 7 125.408 94.131 94.961 1 20 ? C26 CLR 404 R 1 HETATM 27 C C27 CLR . . . I 7 124.724 94.224 92.557 1 20 ? C27 CLR 404 R 1 HETATM 28 O O1 CLR . . . I 7 118.148 91.819 106.181 1 20 ? O1 CLR 404 R 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #