data_8HE8 # _model_server_result.job_id qM6uCsKhcewi4g4Pj0sRLQ _model_server_result.datetime_utc '2024-10-10 14:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8he8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 8HE8 # _exptl.entry_id 8HE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.04 _cell.angle_gamma 90 _cell.entry_id 8HE8 _cell.length_a 41.113 _cell.length_b 103.362 _cell.length_c 134.925 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 193 n n C1 C2 GOL sing 194 n n C1 H11 GOL sing 195 n n C1 H12 GOL sing 196 n n O1 HO1 GOL sing 197 n n C2 O2 GOL sing 198 n n C2 C3 GOL sing 199 n n C2 H2 GOL sing 200 n n O2 HO2 GOL sing 201 n n C3 O3 GOL sing 202 n n C3 H31 GOL sing 203 n n C3 H32 GOL sing 204 n n O3 HO3 GOL sing 205 n n # _atom_sites.entry_id 8HE8 _atom_sites.fract_transf_matrix[1][1] 0.024323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000866 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 601 601 GOL GLO . E 3 1WI A 1 602 1 1WI LIG . F 2 GOL B 1 601 601 GOL GLO . G 3 1WI B 1 602 3 1WI LIG . H 3 1WI C 1 601 2 1WI LIG . I 4 HOH A 1 701 14 HOH HOH . I 4 HOH A 2 702 13 HOH HOH . I 4 HOH A 3 703 1 HOH HOH . I 4 HOH A 4 704 19 HOH HOH . I 4 HOH A 5 705 15 HOH HOH . I 4 HOH A 6 706 7 HOH HOH . I 4 HOH A 7 707 16 HOH HOH . I 4 HOH A 8 708 12 HOH HOH . J 4 HOH B 1 701 8 HOH HOH . J 4 HOH B 2 702 5 HOH HOH . J 4 HOH B 3 703 4 HOH HOH . J 4 HOH B 4 704 3 HOH HOH . J 4 HOH B 5 705 9 HOH HOH . J 4 HOH B 6 706 10 HOH HOH . J 4 HOH B 7 707 17 HOH HOH . K 4 HOH C 1 701 11 HOH HOH . K 4 HOH C 2 702 18 HOH HOH . K 4 HOH C 3 703 2 HOH HOH . K 4 HOH C 4 704 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -10.351 -8.477 26.128 1 41.21 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . D 2 -9.997 -7.764 24.916 1 36.25 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . D 2 -9.205 -9.387 26.452 1 55.71 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . D 2 -7.977 -8.611 26.304 1 63.35 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . D 2 -9.247 -9.882 27.867 1 60.01 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . D 2 -8.008 -9.46 28.505 1 59.59 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #