data_8HE9
#
_model_server_result.job_id            8dmP_vorO9ektg7iy8pdmw 
_model_server_result.datetime_utc      '2024-11-06 20:50:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8he9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    8HE9 
#
_exptl.entry_id    8HE9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HE9 
_cell.length_a            31.432 
_cell.length_b            70.497 
_cell.length_c            93.739 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HE9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 14 1_555 A SG CYS 44 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf2 A SG CYS 27 A CYS 26 1_555 A SG CYS 72 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 63 A CYS 62 1_555 A SG CYS 129 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 64 A CYS 63 1_555 A SG CYS 68 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf5 A SG CYS 101 A CYS 100 1_555 A SG CYS 133 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf6 A SG CYS 109 A CYS 108 1_555 A SG CYS 120 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A SG CYS 30 A CYS 29 1_555 B C21 0IW . A 0IW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 222 n n 
C1 C2 GOL sing 223 n n 
C1 H11 GOL sing 224 n n 
C1 H12 GOL sing 225 n n 
O1 HO1 GOL sing 226 n n 
C2 O2 GOL sing 227 n n 
C2 C3 GOL sing 228 n n 
C2 H2 GOL sing 229 n n 
O2 HO2 GOL sing 230 n n 
C3 O3 GOL sing 231 n n 
C3 H31 GOL sing 232 n n 
C3 H32 GOL sing 233 n n 
O3 HO3 GOL sing 234 n n 
#
_atom_sites.entry_id                     8HE9 
_atom_sites.fract_transf_matrix[1][1]    0.031815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014185 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010668 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0IW A 1 301 301 0IW 0IW . 
C 3 GOL A 1 302 302 GOL GOL . 
D 3 GOL A 1 303 304 GOL GOL . 
E 4 DMS A 1 304 305 DMS DMS . 
F 5 HOH A 1 401 61 HOH HOH . 
F 5 HOH A 2 402 126 HOH HOH . 
F 5 HOH A 3 403 56 HOH HOH . 
F 5 HOH A 4 404 38 HOH HOH . 
F 5 HOH A 5 405 66 HOH HOH . 
F 5 HOH A 6 406 135 HOH HOH . 
F 5 HOH A 7 407 134 HOH HOH . 
F 5 HOH A 8 408 124 HOH HOH . 
F 5 HOH A 9 409 43 HOH HOH . 
F 5 HOH A 10 410 100 HOH HOH . 
F 5 HOH A 11 411 80 HOH HOH . 
F 5 HOH A 12 412 51 HOH HOH . 
F 5 HOH A 13 413 76 HOH HOH . 
F 5 HOH A 14 414 127 HOH HOH . 
F 5 HOH A 15 415 84 HOH HOH . 
F 5 HOH A 16 416 99 HOH HOH . 
F 5 HOH A 17 417 91 HOH HOH . 
F 5 HOH A 18 418 62 HOH HOH . 
F 5 HOH A 19 419 33 HOH HOH . 
F 5 HOH A 20 420 94 HOH HOH . 
F 5 HOH A 21 421 96 HOH HOH . 
F 5 HOH A 22 422 17 HOH HOH . 
F 5 HOH A 23 423 115 HOH HOH . 
F 5 HOH A 24 424 72 HOH HOH . 
F 5 HOH A 25 425 105 HOH HOH . 
F 5 HOH A 26 426 8 HOH HOH . 
F 5 HOH A 27 427 130 HOH HOH . 
F 5 HOH A 28 428 40 HOH HOH . 
F 5 HOH A 29 429 5 HOH HOH . 
F 5 HOH A 30 430 2 HOH HOH . 
F 5 HOH A 31 431 16 HOH HOH . 
F 5 HOH A 32 432 46 HOH HOH . 
F 5 HOH A 33 433 14 HOH HOH . 
F 5 HOH A 34 434 44 HOH HOH . 
F 5 HOH A 35 435 24 HOH HOH . 
F 5 HOH A 36 436 87 HOH HOH . 
F 5 HOH A 37 437 36 HOH HOH . 
F 5 HOH A 38 438 41 HOH HOH . 
F 5 HOH A 39 439 22 HOH HOH . 
F 5 HOH A 40 440 67 HOH HOH . 
F 5 HOH A 41 441 4 HOH HOH . 
F 5 HOH A 42 442 19 HOH HOH . 
F 5 HOH A 43 443 42 HOH HOH . 
F 5 HOH A 44 444 55 HOH HOH . 
F 5 HOH A 45 445 25 HOH HOH . 
F 5 HOH A 46 446 6 HOH HOH . 
F 5 HOH A 47 447 37 HOH HOH . 
F 5 HOH A 48 448 53 HOH HOH . 
F 5 HOH A 49 449 74 HOH HOH . 
F 5 HOH A 50 450 48 HOH HOH . 
F 5 HOH A 51 451 93 HOH HOH . 
F 5 HOH A 52 452 12 HOH HOH . 
F 5 HOH A 53 453 1 HOH HOH . 
F 5 HOH A 54 454 109 HOH HOH . 
F 5 HOH A 55 455 73 HOH HOH . 
F 5 HOH A 56 456 10 HOH HOH . 
F 5 HOH A 57 457 45 HOH HOH . 
F 5 HOH A 58 458 75 HOH HOH . 
F 5 HOH A 59 459 11 HOH HOH . 
F 5 HOH A 60 460 81 HOH HOH . 
F 5 HOH A 61 461 9 HOH HOH . 
F 5 HOH A 62 462 32 HOH HOH . 
F 5 HOH A 63 463 133 HOH HOH . 
F 5 HOH A 64 464 101 HOH HOH . 
F 5 HOH A 65 465 88 HOH HOH . 
F 5 HOH A 66 466 15 HOH HOH . 
F 5 HOH A 67 467 112 HOH HOH . 
F 5 HOH A 68 468 58 HOH HOH . 
F 5 HOH A 69 469 49 HOH HOH . 
F 5 HOH A 70 470 29 HOH HOH . 
F 5 HOH A 71 471 35 HOH HOH . 
F 5 HOH A 72 472 82 HOH HOH . 
F 5 HOH A 73 473 13 HOH HOH . 
F 5 HOH A 74 474 110 HOH HOH . 
F 5 HOH A 75 475 79 HOH HOH . 
F 5 HOH A 76 476 85 HOH HOH . 
F 5 HOH A 77 477 65 HOH HOH . 
F 5 HOH A 78 478 139 HOH HOH . 
F 5 HOH A 79 479 3 HOH HOH . 
F 5 HOH A 80 480 118 HOH HOH . 
F 5 HOH A 81 481 97 HOH HOH . 
F 5 HOH A 82 482 78 HOH HOH . 
F 5 HOH A 83 483 47 HOH HOH . 
F 5 HOH A 84 484 114 HOH HOH . 
F 5 HOH A 85 485 69 HOH HOH . 
F 5 HOH A 86 486 132 HOH HOH . 
F 5 HOH A 87 487 57 HOH HOH . 
F 5 HOH A 88 488 28 HOH HOH . 
F 5 HOH A 89 489 7 HOH HOH . 
F 5 HOH A 90 490 71 HOH HOH . 
F 5 HOH A 91 491 23 HOH HOH . 
F 5 HOH A 92 492 117 HOH HOH . 
F 5 HOH A 93 493 30 HOH HOH . 
F 5 HOH A 94 494 77 HOH HOH . 
F 5 HOH A 95 495 108 HOH HOH . 
F 5 HOH A 96 496 106 HOH HOH . 
F 5 HOH A 97 497 86 HOH HOH . 
F 5 HOH A 98 498 138 HOH HOH . 
F 5 HOH A 99 499 54 HOH HOH . 
F 5 HOH A 100 500 111 HOH HOH . 
F 5 HOH A 101 501 116 HOH HOH . 
F 5 HOH A 102 502 39 HOH HOH . 
F 5 HOH A 103 503 95 HOH HOH . 
F 5 HOH A 104 504 125 HOH HOH . 
F 5 HOH A 105 505 26 HOH HOH . 
F 5 HOH A 106 506 18 HOH HOH . 
F 5 HOH A 107 507 121 HOH HOH . 
F 5 HOH A 108 508 50 HOH HOH . 
F 5 HOH A 109 509 92 HOH HOH . 
F 5 HOH A 110 510 113 HOH HOH . 
F 5 HOH A 111 511 128 HOH HOH . 
F 5 HOH A 112 512 31 HOH HOH . 
F 5 HOH A 113 513 98 HOH HOH . 
F 5 HOH A 114 514 137 HOH HOH . 
F 5 HOH A 115 515 122 HOH HOH . 
F 5 HOH A 116 516 64 HOH HOH . 
F 5 HOH A 117 517 120 HOH HOH . 
F 5 HOH A 118 518 59 HOH HOH . 
F 5 HOH A 119 519 129 HOH HOH . 
F 5 HOH A 120 520 136 HOH HOH . 
F 5 HOH A 121 521 90 HOH HOH . 
F 5 HOH A 122 522 60 HOH HOH . 
F 5 HOH A 123 523 107 HOH HOH . 
F 5 HOH A 124 524 52 HOH HOH . 
F 5 HOH A 125 525 123 HOH HOH . 
F 5 HOH A 126 526 70 HOH HOH . 
F 5 HOH A 127 527 131 HOH HOH . 
F 5 HOH A 128 528 119 HOH HOH . 
F 5 HOH A 129 529 102 HOH HOH . 
F 5 HOH A 130 530 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -10.927 -4.756 17.003 1 36.76 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 3 -9.932 -5.368 17.775 1 32.82 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 3 -11.281 -5.69 15.802 1 36.59 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 3 -12.56 -5.43 15.33 1 33.38 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 3 -10.205 -5.411 14.712 1 36.02 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 3 -10.129 -6.595 13.926 1 31.84 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#