data_8HEN # _model_server_result.job_id vbNnkmssMgFlRehFaa32Kg _model_server_result.datetime_utc '2024-11-22 00:15:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8HEN # _exptl.entry_id 8HEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HEN _cell.length_a 31.477 _cell.length_b 81.597 _cell.length_c 94.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 14 1_555 A SG CYS 46 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 29 A CYS 26 1_555 A SG CYS 74 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 65 A CYS 62 1_555 A SG CYS 131 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 66 A CYS 63 1_555 A SG CYS 70 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 103 A CYS 100 1_555 A SG CYS 135 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 111 A CYS 108 1_555 A SG CYS 122 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 32 A CYS 29 1_555 E C18 L4F . A L4F 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8HEN _atom_sites.fract_transf_matrix[1][1] 0.031769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 2 GOL A 1 302 303 GOL GOL . D 3 DMS A 1 303 304 DMS DMS . E 4 L4F A 1 304 305 L4F LIG . F 5 HOH A 1 401 116 HOH HOH . F 5 HOH A 2 402 65 HOH HOH . F 5 HOH A 3 403 128 HOH HOH . F 5 HOH A 4 404 19 HOH HOH . F 5 HOH A 5 405 1 HOH HOH . F 5 HOH A 6 406 91 HOH HOH . F 5 HOH A 7 407 90 HOH HOH . F 5 HOH A 8 408 95 HOH HOH . F 5 HOH A 9 409 57 HOH HOH . F 5 HOH A 10 410 18 HOH HOH . F 5 HOH A 11 411 22 HOH HOH . F 5 HOH A 12 412 54 HOH HOH . F 5 HOH A 13 413 137 HOH HOH . F 5 HOH A 14 414 103 HOH HOH . F 5 HOH A 15 415 31 HOH HOH . F 5 HOH A 16 416 7 HOH HOH . F 5 HOH A 17 417 135 HOH HOH . F 5 HOH A 18 418 74 HOH HOH . F 5 HOH A 19 419 33 HOH HOH . F 5 HOH A 20 420 63 HOH HOH . F 5 HOH A 21 421 71 HOH HOH . F 5 HOH A 22 422 46 HOH HOH . F 5 HOH A 23 423 84 HOH HOH . F 5 HOH A 24 424 48 HOH HOH . F 5 HOH A 25 425 55 HOH HOH . F 5 HOH A 26 426 62 HOH HOH . F 5 HOH A 27 427 2 HOH HOH . F 5 HOH A 28 428 93 HOH HOH . F 5 HOH A 29 429 97 HOH HOH . F 5 HOH A 30 430 70 HOH HOH . F 5 HOH A 31 431 40 HOH HOH . F 5 HOH A 32 432 124 HOH HOH . F 5 HOH A 33 433 29 HOH HOH . F 5 HOH A 34 434 25 HOH HOH . F 5 HOH A 35 435 99 HOH HOH . F 5 HOH A 36 436 44 HOH HOH . F 5 HOH A 37 437 17 HOH HOH . F 5 HOH A 38 438 16 HOH HOH . F 5 HOH A 39 439 42 HOH HOH . F 5 HOH A 40 440 53 HOH HOH . F 5 HOH A 41 441 87 HOH HOH . F 5 HOH A 42 442 3 HOH HOH . F 5 HOH A 43 443 64 HOH HOH . F 5 HOH A 44 444 139 HOH HOH . F 5 HOH A 45 445 69 HOH HOH . F 5 HOH A 46 446 77 HOH HOH . F 5 HOH A 47 447 127 HOH HOH . F 5 HOH A 48 448 8 HOH HOH . F 5 HOH A 49 449 58 HOH HOH . F 5 HOH A 50 450 60 HOH HOH . F 5 HOH A 51 451 92 HOH HOH . F 5 HOH A 52 452 6 HOH HOH . F 5 HOH A 53 453 113 HOH HOH . F 5 HOH A 54 454 43 HOH HOH . F 5 HOH A 55 455 13 HOH HOH . F 5 HOH A 56 456 118 HOH HOH . F 5 HOH A 57 457 75 HOH HOH . F 5 HOH A 58 458 125 HOH HOH . F 5 HOH A 59 459 4 HOH HOH . F 5 HOH A 60 460 88 HOH HOH . F 5 HOH A 61 461 15 HOH HOH . F 5 HOH A 62 462 26 HOH HOH . F 5 HOH A 63 463 59 HOH HOH . F 5 HOH A 64 464 78 HOH HOH . F 5 HOH A 65 465 121 HOH HOH . F 5 HOH A 66 466 66 HOH HOH . F 5 HOH A 67 467 41 HOH HOH . F 5 HOH A 68 468 68 HOH HOH . F 5 HOH A 69 469 76 HOH HOH . F 5 HOH A 70 470 79 HOH HOH . F 5 HOH A 71 471 32 HOH HOH . F 5 HOH A 72 472 100 HOH HOH . F 5 HOH A 73 473 94 HOH HOH . F 5 HOH A 74 474 112 HOH HOH . F 5 HOH A 75 475 142 HOH HOH . F 5 HOH A 76 476 119 HOH HOH . F 5 HOH A 77 477 133 HOH HOH . F 5 HOH A 78 478 132 HOH HOH . F 5 HOH A 79 479 73 HOH HOH . F 5 HOH A 80 480 80 HOH HOH . F 5 HOH A 81 481 21 HOH HOH . F 5 HOH A 82 482 28 HOH HOH . F 5 HOH A 83 483 114 HOH HOH . F 5 HOH A 84 484 38 HOH HOH . F 5 HOH A 85 485 34 HOH HOH . F 5 HOH A 86 486 120 HOH HOH . F 5 HOH A 87 487 50 HOH HOH . F 5 HOH A 88 488 51 HOH HOH . F 5 HOH A 89 489 23 HOH HOH . F 5 HOH A 90 490 108 HOH HOH . F 5 HOH A 91 491 122 HOH HOH . F 5 HOH A 92 492 14 HOH HOH . F 5 HOH A 93 493 36 HOH HOH . F 5 HOH A 94 494 96 HOH HOH . F 5 HOH A 95 495 9 HOH HOH . F 5 HOH A 96 496 111 HOH HOH . F 5 HOH A 97 497 89 HOH HOH . F 5 HOH A 98 498 11 HOH HOH . F 5 HOH A 99 499 105 HOH HOH . F 5 HOH A 100 500 10 HOH HOH . F 5 HOH A 101 501 45 HOH HOH . F 5 HOH A 102 502 49 HOH HOH . F 5 HOH A 103 503 115 HOH HOH . F 5 HOH A 104 504 106 HOH HOH . F 5 HOH A 105 505 5 HOH HOH . F 5 HOH A 106 506 140 HOH HOH . F 5 HOH A 107 507 67 HOH HOH . F 5 HOH A 108 508 107 HOH HOH . F 5 HOH A 109 509 85 HOH HOH . F 5 HOH A 110 510 52 HOH HOH . F 5 HOH A 111 511 61 HOH HOH . F 5 HOH A 112 512 104 HOH HOH . F 5 HOH A 113 513 12 HOH HOH . F 5 HOH A 114 514 24 HOH HOH . F 5 HOH A 115 515 81 HOH HOH . F 5 HOH A 116 516 134 HOH HOH . F 5 HOH A 117 517 98 HOH HOH . F 5 HOH A 118 518 47 HOH HOH . F 5 HOH A 119 519 39 HOH HOH . F 5 HOH A 120 520 138 HOH HOH . F 5 HOH A 121 521 56 HOH HOH . F 5 HOH A 122 522 143 HOH HOH . F 5 HOH A 123 523 72 HOH HOH . F 5 HOH A 124 524 129 HOH HOH . F 5 HOH A 125 525 117 HOH HOH . F 5 HOH A 126 526 82 HOH HOH . F 5 HOH A 127 527 110 HOH HOH . F 5 HOH A 128 528 141 HOH HOH . F 5 HOH A 129 529 86 HOH HOH . F 5 HOH A 130 530 35 HOH HOH . F 5 HOH A 131 531 130 HOH HOH . F 5 HOH A 132 532 126 HOH HOH . F 5 HOH A 133 533 109 HOH HOH . F 5 HOH A 134 534 37 HOH HOH . F 5 HOH A 135 535 102 HOH HOH . F 5 HOH A 136 536 131 HOH HOH . F 5 HOH A 137 537 136 HOH HOH . F 5 HOH A 138 538 123 HOH HOH . F 5 HOH A 139 539 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -24.634 -1.9 4.05 1 51.24 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 3 -25.397 -2.842 3.175 1 48.85 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 3 -25.715 -1.346 5.404 1 41.06 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 3 -24.153 -0.398 3.143 1 38.66 ? C2 DMS 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #