data_8HEZ # _model_server_result.job_id CzCK6oWQ5w-JkJrUuYnOKg _model_server_result.datetime_utc '2024-12-22 06:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8HEZ # _exptl.entry_id 8HEZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 408.873 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[(4-ethoxyphenyl)methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HEZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 259 A CYS 255 1_555 A SG CYS 515 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 349 A CYS 345 1_555 A SG CYS 355 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf3 A SG CYS 359 A CYS 355 1_555 A SG CYS 365 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf4 A SG CYS 521 A CYS 517 1_555 A SG CYS 526 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale1 A ND2 ASN 254 A ASN 250 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A O ALA 77 A ALA 73 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc2 A O ILE 80 A ILE 76 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 A O ALA 393 A ALA 389 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 A OG SER 396 A SER 392 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A OG SER 397 A SER 393 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C21 H25 Cl O6' _chem_comp.formula_weight 408.873 _chem_comp.id LE6 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[(4-ethoxyphenyl)methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dapagliflozin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C18 LE6 sing 173 n n O3 C19 LE6 sing 174 n n C19 C18 LE6 sing 175 n n C19 C20 LE6 sing 176 n n C18 C17 LE6 sing 177 n n O5 C20 LE6 sing 178 n n C17 C21 LE6 sing 179 n n C17 O2 LE6 sing 180 n n C20 C16 LE6 sing 181 n n C21 O6 LE6 sing 182 n n C16 O2 LE6 sing 183 n n C16 C1 LE6 sing 184 n n C1 C2 LE6 doub 185 n y C1 C6 LE6 sing 186 n y C2 C3 LE6 sing 187 n y C6 C5 LE6 doub 188 n y C3 C4 LE6 doub 189 n y C5 C4 LE6 sing 190 n y C5 C9 LE6 sing 191 n n C4 CL1 LE6 sing 192 n n C9 C8 LE6 sing 193 n n C7 C8 LE6 doub 194 n y C7 C10 LE6 sing 195 n y C8 C13 LE6 sing 196 n y C10 C11 LE6 doub 197 n y C13 C12 LE6 doub 198 n y C11 C12 LE6 sing 199 n y C11 O1 LE6 sing 200 n n C15 C14 LE6 sing 201 n n O1 C14 LE6 sing 202 n n C7 H1 LE6 sing 203 n n C9 H2 LE6 sing 204 n n C9 H3 LE6 sing 205 n n O5 H4 LE6 sing 206 n n C6 H5 LE6 sing 207 n n O4 H6 LE6 sing 208 n n C3 H7 LE6 sing 209 n n O3 H8 LE6 sing 210 n n C2 H9 LE6 sing 211 n n C10 H10 LE6 sing 212 n n C12 H11 LE6 sing 213 n n C13 H12 LE6 sing 214 n n C14 H13 LE6 sing 215 n n C14 H14 LE6 sing 216 n n C15 H15 LE6 sing 217 n n C15 H16 LE6 sing 218 n n C15 H17 LE6 sing 219 n n C16 H18 LE6 sing 220 n n C17 H19 LE6 sing 221 n n C18 H20 LE6 sing 222 n n C19 H21 LE6 sing 223 n n C20 H22 LE6 sing 224 n n C21 H23 LE6 sing 225 n n C21 H24 LE6 sing 226 n n O6 H25 LE6 sing 227 n n # _atom_sites.entry_id 8HEZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 LE6 A 1 802 901 LE6 XXX . E 5 NA A 1 803 1 NA NA . F 6 HOH A 1 901 3 HOH HOH . F 6 HOH A 2 902 1 HOH HOH . F 6 HOH A 3 903 2 HOH HOH . F 6 HOH A 4 904 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LE6 . . . D 4 66.312 66.013 78.621 1 52.25 ? C7 LE6 802 A 1 HETATM 2 C C8 LE6 . . . D 4 67.336 65.081 78.673 1 52.48 ? C8 LE6 802 A 1 HETATM 3 C C9 LE6 . . . D 4 67.923 64.51 77.41 1 57.62 ? C9 LE6 802 A 1 HETATM 4 O O1 LE6 . . . D 4 65.808 66.546 82.253 1 61.59 ? O1 LE6 802 A 1 HETATM 5 C C1 LE6 . . . D 4 68.167 66.977 74.527 1 65.26 ? C1 LE6 802 A 1 HETATM 6 O O5 LE6 . . . D 4 67.39 65.178 72.292 1 62.32 ? O5 LE6 802 A 1 HETATM 7 C C5 LE6 . . . D 4 68.455 65.581 76.504 1 57.58 ? C5 LE6 802 A 1 HETATM 8 C C6 LE6 . . . D 4 67.715 65.991 75.4 1 69.48 ? C6 LE6 802 A 1 HETATM 9 C C4 LE6 . . . D 4 69.662 66.206 76.731 1 58.14 ? C4 LE6 802 A 1 HETATM 10 O O4 LE6 . . . D 4 64.362 68.607 70.753 1 54.33 ? O4 LE6 802 A 1 HETATM 11 C C3 LE6 . . . D 4 70.143 67.192 75.887 1 59.43 ? C3 LE6 802 A 1 HETATM 12 O O3 LE6 . . . D 4 65.025 65.759 70.985 1 66.34 ? O3 LE6 802 A 1 HETATM 13 C C2 LE6 . . . D 4 69.391 67.572 74.785 1 55.83 ? C2 LE6 802 A 1 HETATM 14 CL CL1 LE6 . . . D 4 70.606 65.729 78.11 1 99.64 ? CL1 LE6 802 A 1 HETATM 15 C C10 LE6 . . . D 4 65.759 66.534 79.774 1 56.18 ? C10 LE6 802 A 1 HETATM 16 C C11 LE6 . . . D 4 66.239 66.122 81.02 1 56.91 ? C11 LE6 802 A 1 HETATM 17 C C12 LE6 . . . D 4 67.258 65.186 81.085 1 55.31 ? C12 LE6 802 A 1 HETATM 18 C C13 LE6 . . . D 4 67.798 64.68 79.918 1 52.78 ? C13 LE6 802 A 1 HETATM 19 C C14 LE6 . . . D 4 65.157 67.809 82.388 1 64.22 ? C14 LE6 802 A 1 HETATM 20 C C15 LE6 . . . D 4 63.679 67.573 82.185 1 80.41 ? C15 LE6 802 A 1 HETATM 21 C C16 LE6 . . . D 4 67.365 67.398 73.329 1 64.74 ? C16 LE6 802 A 1 HETATM 22 O O2 LE6 . . . D 4 66.472 68.44 73.755 1 63.85 ? O2 LE6 802 A 1 HETATM 23 C C17 LE6 . . . D 4 65.822 69.071 72.631 1 53.82 ? C17 LE6 802 A 1 HETATM 24 C C18 LE6 . . . D 4 64.962 68.022 71.889 1 53.05 ? C18 LE6 802 A 1 HETATM 25 C C19 LE6 . . . D 4 65.818 66.829 71.478 1 54.18 ? C19 LE6 802 A 1 HETATM 26 C C20 LE6 . . . D 4 66.556 66.268 72.678 1 60.23 ? C20 LE6 802 A 1 HETATM 27 C C21 LE6 . . . D 4 65.032 70.194 73.2 1 51.65 ? C21 LE6 802 A 1 HETATM 28 O O6 LE6 . . . D 4 65.846 71.062 73.933 1 52.06 ? O6 LE6 802 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #