data_8HF3 # _model_server_result.job_id Tfh3Uq7QiPUmhiakzm6wLQ _model_server_result.datetime_utc '2025-09-30 19:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 8HF3 # _exptl.entry_id 8HF3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 535.671 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HF3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 24 A CYS 24 1_555 G C1 PLM . A PLM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale2 A SG CYS 25 A CYS 25 1_555 F C1 PLM . A PLM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale3 A SG CYS 169 A CYS 169 1_555 E C1 PLM . A PLM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 A SG CYS 288 A CYS 288 1_555 H C1 PLM . A PLM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc1 A SG CYS 141 A CYS 141 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 144 A CYS 144 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A SG CYS 155 A CYS 155 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A SG CYS 158 A CYS 158 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 A SG CYS 161 A CYS 161 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 A ND1 HIS 168 A HIS 168 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A SG CYS 175 A CYS 175 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C27 H52 O8 P -1' _chem_comp.formula_weight 535.671 _chem_comp.id PX2 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX2 sing 324 n n O2 P1 PX2 doub 325 n n P1 O3 PX2 sing 326 n n P1 O4 PX2 sing 327 n n O3 H1 PX2 sing 328 n n O4 C1 PX2 sing 329 n n C1 C2 PX2 sing 330 n n C1 H2 PX2 sing 331 n n C1 H3 PX2 sing 332 n n C2 C3 PX2 sing 333 n n C2 O7 PX2 sing 334 n n C2 H4 PX2 sing 335 n n C3 O5 PX2 sing 336 n n C3 H5 PX2 sing 337 n n C3 H6 PX2 sing 338 n n O5 C4 PX2 sing 339 n n C4 O6 PX2 doub 340 n n C4 C5 PX2 sing 341 n n C5 C6 PX2 sing 342 n n C5 H7 PX2 sing 343 n n C5 H8 PX2 sing 344 n n C6 C7 PX2 sing 345 n n C6 H9 PX2 sing 346 n n C6 H10 PX2 sing 347 n n C7 C8 PX2 sing 348 n n C7 H11 PX2 sing 349 n n C7 H12 PX2 sing 350 n n C8 C9 PX2 sing 351 n n C8 H13 PX2 sing 352 n n C8 H14 PX2 sing 353 n n C9 C10 PX2 sing 354 n n C9 H15 PX2 sing 355 n n C9 H16 PX2 sing 356 n n C10 C11 PX2 sing 357 n n C10 H17 PX2 sing 358 n n C10 H18 PX2 sing 359 n n C11 C12 PX2 sing 360 n n C11 H19 PX2 sing 361 n n C11 H20 PX2 sing 362 n n C12 C13 PX2 sing 363 n n C12 H21 PX2 sing 364 n n C12 H22 PX2 sing 365 n n C13 C14 PX2 sing 366 n n C13 H23 PX2 sing 367 n n C13 H24 PX2 sing 368 n n C14 C15 PX2 sing 369 n n C14 H25 PX2 sing 370 n n C14 H26 PX2 sing 371 n n C15 H27 PX2 sing 372 n n C15 H28 PX2 sing 373 n n C15 H29 PX2 sing 374 n n O7 C16 PX2 sing 375 n n C16 O8 PX2 doub 376 n n C16 C17 PX2 sing 377 n n C17 C18 PX2 sing 378 n n C17 H30 PX2 sing 379 n n C17 H31 PX2 sing 380 n n C18 C19 PX2 sing 381 n n C18 H32 PX2 sing 382 n n C18 H33 PX2 sing 383 n n C19 C20 PX2 sing 384 n n C19 H34 PX2 sing 385 n n C19 H35 PX2 sing 386 n n C20 C21 PX2 sing 387 n n C20 H36 PX2 sing 388 n n C20 H37 PX2 sing 389 n n C21 C22 PX2 sing 390 n n C21 H38 PX2 sing 391 n n C21 H39 PX2 sing 392 n n C22 C23 PX2 sing 393 n n C22 H40 PX2 sing 394 n n C22 H41 PX2 sing 395 n n C23 C24 PX2 sing 396 n n C23 H42 PX2 sing 397 n n C23 H43 PX2 sing 398 n n C24 C25 PX2 sing 399 n n C24 H44 PX2 sing 400 n n C24 H45 PX2 sing 401 n n C25 C26 PX2 sing 402 n n C25 H46 PX2 sing 403 n n C25 H47 PX2 sing 404 n n C26 C27 PX2 sing 405 n n C26 H48 PX2 sing 406 n n C26 H49 PX2 sing 407 n n C27 H50 PX2 sing 408 n n C27 H51 PX2 sing 409 n n C27 H52 PX2 sing 410 n n # _atom_sites.entry_id 8HF3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 3 ZN A 1 402 2 ZN ZN . E 4 PLM A 1 403 1 PLM PLM . F 4 PLM A 1 404 2 PLM PLM . G 4 PLM A 1 405 3 PLM PLM . H 4 PLM A 1 406 4 PLM PLM . I 5 PX2 A 1 407 1 PX2 PX2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX2 . . . I 5 112.21 97.686 89.308 1 51.84 ? O1 PX2 407 A 1 HETATM 2 O O2 PX2 . . . I 5 110.936 95.554 88.843 1 51.84 ? O2 PX2 407 A 1 HETATM 3 P P1 PX2 . . . I 5 112.007 96.23 89.676 1 51.84 ? P1 PX2 407 A 1 HETATM 4 O O3 PX2 . . . I 5 113.305 95.452 89.711 1 51.84 ? O3 PX2 407 A 1 HETATM 5 O O4 PX2 . . . I 5 111.441 96.246 91.187 1 51.84 ? O4 PX2 407 A 1 HETATM 6 C C1 PX2 . . . I 5 110.198 96.954 91.436 1 51.84 ? C1 PX2 407 A 1 HETATM 7 C C2 PX2 . . . I 5 109.878 97.046 92.911 1 51.84 ? C2 PX2 407 A 1 HETATM 8 C C3 PX2 . . . I 5 108.658 97.892 93.197 1 51.84 ? C3 PX2 407 A 1 HETATM 9 O O5 PX2 . . . I 5 108.267 97.69 94.571 1 51.84 ? O5 PX2 407 A 1 HETATM 10 C C4 PX2 . . . I 5 107.138 98.277 94.95 1 51.84 ? C4 PX2 407 A 1 HETATM 11 O O6 PX2 . . . I 5 106.635 99.191 94.354 1 51.84 ? O6 PX2 407 A 1 HETATM 12 C C5 PX2 . . . I 5 106.555 97.606 96.153 1 51.84 ? C5 PX2 407 A 1 HETATM 13 C C6 PX2 . . . I 5 105.251 98.184 96.582 1 51.84 ? C6 PX2 407 A 1 HETATM 14 C C7 PX2 . . . I 5 105.409 99.514 97.289 1 51.84 ? C7 PX2 407 A 1 HETATM 15 C C8 PX2 . . . I 5 104.157 99.962 97.987 1 51.84 ? C8 PX2 407 A 1 HETATM 16 C C9 PX2 . . . I 5 103.003 100.229 97.059 1 51.84 ? C9 PX2 407 A 1 HETATM 17 C C10 PX2 . . . I 5 101.656 100.33 97.734 1 51.84 ? C10 PX2 407 A 1 HETATM 18 C C11 PX2 . . . I 5 101.598 101.284 98.902 1 51.84 ? C11 PX2 407 A 1 HETATM 19 C C12 PX2 . . . I 5 101.675 100.618 100.255 1 51.84 ? C12 PX2 407 A 1 HETATM 20 C C13 PX2 . . . I 5 101.66 101.577 101.415 1 51.84 ? C13 PX2 407 A 1 HETATM 21 C C14 PX2 . . . I 5 101.731 100.929 102.77 1 51.84 ? C14 PX2 407 A 1 HETATM 22 C C15 PX2 . . . I 5 101.757 101.941 103.887 1 51.84 ? C15 PX2 407 A 1 HETATM 23 O O7 PX2 . . . I 5 109.652 95.743 93.52 1 51.84 ? O7 PX2 407 A 1 HETATM 24 C C16 PX2 . . . I 5 108.526 95.078 93.215 1 51.84 ? C16 PX2 407 A 1 HETATM 25 O O8 PX2 . . . I 5 108.076 94.993 92.102 1 51.84 ? O8 PX2 407 A 1 HETATM 26 C C17 PX2 . . . I 5 107.858 94.541 94.446 1 51.84 ? C17 PX2 407 A 1 HETATM 27 C C18 PX2 . . . I 5 107.165 93.234 94.238 1 51.84 ? C18 PX2 407 A 1 HETATM 28 C C19 PX2 . . . I 5 106.295 92.864 95.425 1 51.84 ? C19 PX2 407 A 1 HETATM 29 C C20 PX2 . . . I 5 105.215 93.874 95.714 1 51.84 ? C20 PX2 407 A 1 HETATM 30 C C21 PX2 . . . I 5 104.176 93.981 94.628 1 51.84 ? C21 PX2 407 A 1 HETATM 31 C C22 PX2 . . . I 5 103.317 95.218 94.706 1 51.84 ? C22 PX2 407 A 1 HETATM 32 C C23 PX2 . . . I 5 102.539 95.36 95.987 1 51.84 ? C23 PX2 407 A 1 HETATM 33 C C24 PX2 . . . I 5 101.729 96.629 96.078 1 51.84 ? C24 PX2 407 A 1 HETATM 34 C C25 PX2 . . . I 5 100.873 96.716 97.314 1 51.84 ? C25 PX2 407 A 1 HETATM 35 C C26 PX2 . . . I 5 99.95 95.533 97.438 1 51.84 ? C26 PX2 407 A 1 HETATM 36 C C27 PX2 . . . I 5 99.075 95.536 98.664 1 51.84 ? C27 PX2 407 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #