data_8HFB # _model_server_result.job_id N24GmaGw1HTsNAuNZMAYDA _model_server_result.datetime_utc '2025-09-30 03:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1005}' # _entry.id 8HFB # _exptl.entry_id 8HFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HFB _cell.length_a 94.299 _cell.length_b 125.211 _cell.length_c 119.008 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 62 1_555 H NI NI . A NI 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A NE2 HIS 64 A HIS 64 1_555 H NI NI . A NI 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A OE1 GLU 69 A GLU 69 1_555 H NI NI . A NI 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 A NE2 HIS 103 A HIS 103 1_555 H NI NI . A NI 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 A NE2 HIS 234 A HIS 234 1_555 G NI NI . A NI 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 A NE2 HIS 236 A HIS 236 1_555 G NI NI . A NI 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 A OE2 GLU 241 A GLU 241 1_555 G NI NI . A NI 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 A NE2 HIS 275 A HIS 275 1_555 G NI NI . A NI 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc9 G NI NI . A NI 1005 1_555 L O HOH . A HOH 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 G NI NI . A NI 1005 1_555 L O HOH . A HOH 1170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 H NI NI . A NI 1006 1_555 L O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 H NI NI . A NI 1006 1_555 L O HOH . A HOH 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc13 B NE2 HIS 62 B HIS 62 1_555 J NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc14 B NE2 HIS 64 B HIS 64 1_555 J NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 B OE2 GLU 69 B GLU 69 1_555 J NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc16 B NE2 HIS 103 B HIS 103 1_555 J NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc17 B NE2 HIS 234 B HIS 234 1_555 K NI NI . B NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc18 B NE2 HIS 236 B HIS 236 1_555 K NI NI . B NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc19 B OE2 GLU 241 B GLU 241 1_555 K NI NI . B NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc20 B NE2 HIS 275 B HIS 275 1_555 K NI NI . B NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc21 J NI NI . B NI 502 1_555 M O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc22 J NI NI . B NI 502 1_555 M O HOH . B HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc23 K NI NI . B NI 503 1_555 M O HOH . B HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc24 K NI NI . B NI 503 1_555 M O HOH . B HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8HFB _atom_sites.fract_transf_matrix[1][1] 0.010605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 1001 1001 EDO EDO . D 2 EDO A 1 1002 1101 EDO EDO . E 2 EDO A 1 1003 1301 EDO EDO . F 3 GOL A 1 1004 1401 GOL GOL . G 4 NI A 1 1005 1 NI NI . H 4 NI A 1 1006 2 NI NI . I 2 EDO B 1 501 501 EDO EDO . J 4 NI B 1 502 3 NI NI . K 4 NI B 1 503 4 NI NI . L 5 HOH A 1 1101 83 HOH HOH . L 5 HOH A 2 1102 78 HOH HOH . L 5 HOH A 3 1103 112 HOH HOH . L 5 HOH A 4 1104 101 HOH HOH . L 5 HOH A 5 1105 171 HOH HOH . L 5 HOH A 6 1106 152 HOH HOH . L 5 HOH A 7 1107 98 HOH HOH . L 5 HOH A 8 1108 52 HOH HOH . L 5 HOH A 9 1109 61 HOH HOH . L 5 HOH A 10 1110 148 HOH HOH . L 5 HOH A 11 1111 67 HOH HOH . L 5 HOH A 12 1112 160 HOH HOH . L 5 HOH A 13 1113 179 HOH HOH . L 5 HOH A 14 1114 147 HOH HOH . L 5 HOH A 15 1115 87 HOH HOH . L 5 HOH A 16 1116 144 HOH HOH . L 5 HOH A 17 1117 8 HOH HOH . L 5 HOH A 18 1118 106 HOH HOH . L 5 HOH A 19 1119 89 HOH HOH . L 5 HOH A 20 1120 56 HOH HOH . L 5 HOH A 21 1121 96 HOH HOH . L 5 HOH A 22 1122 141 HOH HOH . L 5 HOH A 23 1123 21 HOH HOH . L 5 HOH A 24 1124 51 HOH HOH . L 5 HOH A 25 1125 184 HOH HOH . L 5 HOH A 26 1126 42 HOH HOH . L 5 HOH A 27 1127 28 HOH HOH . L 5 HOH A 28 1128 24 HOH HOH . L 5 HOH A 29 1129 54 HOH HOH . L 5 HOH A 30 1130 102 HOH HOH . L 5 HOH A 31 1131 155 HOH HOH . L 5 HOH A 32 1132 17 HOH HOH . L 5 HOH A 33 1133 27 HOH HOH . L 5 HOH A 34 1134 65 HOH HOH . L 5 HOH A 35 1135 38 HOH HOH . L 5 HOH A 36 1136 159 HOH HOH . L 5 HOH A 37 1137 149 HOH HOH . L 5 HOH A 38 1138 117 HOH HOH . L 5 HOH A 39 1139 111 HOH HOH . L 5 HOH A 40 1140 86 HOH HOH . L 5 HOH A 41 1141 48 HOH HOH . L 5 HOH A 42 1142 15 HOH HOH . L 5 HOH A 43 1143 39 HOH HOH . L 5 HOH A 44 1144 60 HOH HOH . L 5 HOH A 45 1145 145 HOH HOH . L 5 HOH A 46 1146 35 HOH HOH . L 5 HOH A 47 1147 32 HOH HOH . L 5 HOH A 48 1148 103 HOH HOH . L 5 HOH A 49 1149 80 HOH HOH . L 5 HOH A 50 1150 108 HOH HOH . L 5 HOH A 51 1151 161 HOH HOH . L 5 HOH A 52 1152 81 HOH HOH . L 5 HOH A 53 1153 180 HOH HOH . L 5 HOH A 54 1154 157 HOH HOH . L 5 HOH A 55 1155 44 HOH HOH . L 5 HOH A 56 1156 25 HOH HOH . L 5 HOH A 57 1157 129 HOH HOH . L 5 HOH A 58 1158 146 HOH HOH . L 5 HOH A 59 1159 20 HOH HOH . L 5 HOH A 60 1160 4 HOH HOH . L 5 HOH A 61 1161 85 HOH HOH . L 5 HOH A 62 1162 43 HOH HOH . L 5 HOH A 63 1163 55 HOH HOH . L 5 HOH A 64 1164 91 HOH HOH . L 5 HOH A 65 1165 14 HOH HOH . L 5 HOH A 66 1166 2 HOH HOH . L 5 HOH A 67 1167 79 HOH HOH . L 5 HOH A 68 1168 97 HOH HOH . L 5 HOH A 69 1169 119 HOH HOH . L 5 HOH A 70 1170 1 HOH HOH . L 5 HOH A 71 1171 153 HOH HOH . L 5 HOH A 72 1172 110 HOH HOH . L 5 HOH A 73 1173 185 HOH HOH . L 5 HOH A 74 1174 19 HOH HOH . L 5 HOH A 75 1175 36 HOH HOH . L 5 HOH A 76 1176 187 HOH HOH . L 5 HOH A 77 1177 50 HOH HOH . L 5 HOH A 78 1178 113 HOH HOH . L 5 HOH A 79 1179 109 HOH HOH . L 5 HOH A 80 1180 158 HOH HOH . L 5 HOH A 81 1181 150 HOH HOH . L 5 HOH A 82 1182 116 HOH HOH . L 5 HOH A 83 1183 115 HOH HOH . L 5 HOH A 84 1184 151 HOH HOH . L 5 HOH A 85 1185 107 HOH HOH . L 5 HOH A 86 1186 100 HOH HOH . L 5 HOH A 87 1187 66 HOH HOH . L 5 HOH A 88 1188 121 HOH HOH . L 5 HOH A 89 1189 162 HOH HOH . L 5 HOH A 90 1190 118 HOH HOH . L 5 HOH A 91 1191 140 HOH HOH . L 5 HOH A 92 1192 46 HOH HOH . L 5 HOH A 93 1193 74 HOH HOH . L 5 HOH A 94 1194 84 HOH HOH . L 5 HOH A 95 1195 53 HOH HOH . L 5 HOH A 96 1196 47 HOH HOH . L 5 HOH A 97 1197 120 HOH HOH . M 5 HOH B 1 601 58 HOH HOH . M 5 HOH B 2 602 135 HOH HOH . M 5 HOH B 3 603 127 HOH HOH . M 5 HOH B 4 604 16 HOH HOH . M 5 HOH B 5 605 154 HOH HOH . M 5 HOH B 6 606 131 HOH HOH . M 5 HOH B 7 607 40 HOH HOH . M 5 HOH B 8 608 49 HOH HOH . M 5 HOH B 9 609 176 HOH HOH . M 5 HOH B 10 610 183 HOH HOH . M 5 HOH B 11 611 26 HOH HOH . M 5 HOH B 12 612 138 HOH HOH . M 5 HOH B 13 613 169 HOH HOH . M 5 HOH B 14 614 75 HOH HOH . M 5 HOH B 15 615 82 HOH HOH . M 5 HOH B 16 616 31 HOH HOH . M 5 HOH B 17 617 114 HOH HOH . M 5 HOH B 18 618 172 HOH HOH . M 5 HOH B 19 619 12 HOH HOH . M 5 HOH B 20 620 94 HOH HOH . M 5 HOH B 21 621 5 HOH HOH . M 5 HOH B 22 622 30 HOH HOH . M 5 HOH B 23 623 178 HOH HOH . M 5 HOH B 24 624 133 HOH HOH . M 5 HOH B 25 625 71 HOH HOH . M 5 HOH B 26 626 62 HOH HOH . M 5 HOH B 27 627 104 HOH HOH . M 5 HOH B 28 628 13 HOH HOH . M 5 HOH B 29 629 175 HOH HOH . M 5 HOH B 30 630 22 HOH HOH . M 5 HOH B 31 631 9 HOH HOH . M 5 HOH B 32 632 92 HOH HOH . M 5 HOH B 33 633 181 HOH HOH . M 5 HOH B 34 634 7 HOH HOH . M 5 HOH B 35 635 95 HOH HOH . M 5 HOH B 36 636 37 HOH HOH . M 5 HOH B 37 637 156 HOH HOH . M 5 HOH B 38 638 45 HOH HOH . M 5 HOH B 39 639 73 HOH HOH . M 5 HOH B 40 640 134 HOH HOH . M 5 HOH B 41 641 29 HOH HOH . M 5 HOH B 42 642 57 HOH HOH . M 5 HOH B 43 643 90 HOH HOH . M 5 HOH B 44 644 173 HOH HOH . M 5 HOH B 45 645 88 HOH HOH . M 5 HOH B 46 646 23 HOH HOH . M 5 HOH B 47 647 6 HOH HOH . M 5 HOH B 48 648 123 HOH HOH . M 5 HOH B 49 649 167 HOH HOH . M 5 HOH B 50 650 122 HOH HOH . M 5 HOH B 51 651 177 HOH HOH . M 5 HOH B 52 652 33 HOH HOH . M 5 HOH B 53 653 59 HOH HOH . M 5 HOH B 54 654 168 HOH HOH . M 5 HOH B 55 655 10 HOH HOH . M 5 HOH B 56 656 34 HOH HOH . M 5 HOH B 57 657 143 HOH HOH . M 5 HOH B 58 658 186 HOH HOH . M 5 HOH B 59 659 77 HOH HOH . M 5 HOH B 60 660 99 HOH HOH . M 5 HOH B 61 661 163 HOH HOH . M 5 HOH B 62 662 18 HOH HOH . M 5 HOH B 63 663 11 HOH HOH . M 5 HOH B 64 664 182 HOH HOH . M 5 HOH B 65 665 64 HOH HOH . M 5 HOH B 66 666 128 HOH HOH . M 5 HOH B 67 667 68 HOH HOH . M 5 HOH B 68 668 170 HOH HOH . M 5 HOH B 69 669 72 HOH HOH . M 5 HOH B 70 670 125 HOH HOH . M 5 HOH B 71 671 93 HOH HOH . M 5 HOH B 72 672 174 HOH HOH . M 5 HOH B 73 673 165 HOH HOH . M 5 HOH B 74 674 63 HOH HOH . M 5 HOH B 75 675 166 HOH HOH . M 5 HOH B 76 676 69 HOH HOH . M 5 HOH B 77 677 132 HOH HOH . M 5 HOH B 78 678 70 HOH HOH . M 5 HOH B 79 679 136 HOH HOH . M 5 HOH B 80 680 124 HOH HOH . M 5 HOH B 81 681 142 HOH HOH . M 5 HOH B 82 682 41 HOH HOH . M 5 HOH B 83 683 3 HOH HOH . M 5 HOH B 84 684 139 HOH HOH . M 5 HOH B 85 685 164 HOH HOH . M 5 HOH B 86 686 137 HOH HOH . M 5 HOH B 87 687 126 HOH HOH . M 5 HOH B 88 688 130 HOH HOH . M 5 HOH B 89 689 76 HOH HOH . M 5 HOH B 90 690 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.525 _atom_site.Cartn_y 48.315 _atom_site.Cartn_z 8.521 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1005 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #