data_8HFI # _model_server_result.job_id 94Ij44rAI8YAJYdWcrMdFQ _model_server_result.datetime_utc '2025-07-07 23:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8HFI # _exptl.entry_id 8HFI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 266.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HFI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 176 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 176 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 185 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 185 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 83 n n C18 H181 DSM sing 84 n n C18 H182 DSM sing 85 n n C18 H183 DSM sing 86 n n N2 C17 DSM sing 87 n n N2 HN2 DSM sing 88 n n C17 C16 DSM sing 89 n n C17 H171 DSM sing 90 n n C17 H172 DSM sing 91 n n C16 C15 DSM sing 92 n n C16 H161 DSM sing 93 n n C16 H162 DSM sing 94 n n C15 N1 DSM sing 95 n n C15 H151 DSM sing 96 n n C15 H152 DSM sing 97 n n N1 C11 DSM sing 98 n n N1 C14 DSM sing 99 n n C14 C1 DSM sing 100 n y C14 C13 DSM doub 101 n y C1 C2 DSM doub 102 n y C1 H1 DSM sing 103 n n C2 C3 DSM sing 104 n y C2 H2 DSM sing 105 n n C3 C4 DSM doub 106 n y C3 H3 DSM sing 107 n n C4 C13 DSM sing 108 n y C4 H4 DSM sing 109 n n C13 C5 DSM sing 110 n n C5 C6 DSM sing 111 n n C5 H51 DSM sing 112 n n C5 H52 DSM sing 113 n n C6 C12 DSM sing 114 n n C6 H61 DSM sing 115 n n C6 H62 DSM sing 116 n n C12 C11 DSM doub 117 n y C12 C7 DSM sing 118 n y C11 C10 DSM sing 119 n y C7 C8 DSM doub 120 n y C7 H7 DSM sing 121 n n C8 C9 DSM sing 122 n y C8 H8 DSM sing 123 n n C9 C10 DSM doub 124 n y C9 H9 DSM sing 125 n n C10 H10 DSM sing 126 n n # _atom_sites.entry_id 8HFI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSM A 1 701 701 DSM DSM . C 3 CL A 1 702 702 CL CL . D 4 HOH A 1 801 801 HOH HOH . D 4 HOH A 2 802 802 HOH HOH . D 4 HOH A 3 803 803 HOH HOH . D 4 HOH A 4 804 804 HOH HOH . D 4 HOH A 5 805 805 HOH HOH . D 4 HOH A 6 806 806 HOH HOH . D 4 HOH A 7 807 807 HOH HOH . D 4 HOH A 8 808 808 HOH HOH . D 4 HOH A 9 809 809 HOH HOH . D 4 HOH A 10 810 810 HOH HOH . D 4 HOH A 11 811 811 HOH HOH . D 4 HOH A 12 812 812 HOH HOH . D 4 HOH A 13 813 813 HOH HOH . D 4 HOH A 14 814 814 HOH HOH . D 4 HOH A 15 815 815 HOH HOH . D 4 HOH A 16 816 816 HOH HOH . D 4 HOH A 17 817 817 HOH HOH . D 4 HOH A 18 818 818 HOH HOH . D 4 HOH A 19 819 819 HOH HOH . D 4 HOH A 20 820 820 HOH HOH . D 4 HOH A 21 821 821 HOH HOH . D 4 HOH A 22 822 822 HOH HOH . D 4 HOH A 23 823 823 HOH HOH . D 4 HOH A 24 824 824 HOH HOH . D 4 HOH A 25 825 825 HOH HOH . D 4 HOH A 26 826 826 HOH HOH . D 4 HOH A 27 827 827 HOH HOH . D 4 HOH A 28 828 828 HOH HOH . D 4 HOH A 29 829 829 HOH HOH . D 4 HOH A 30 830 830 HOH HOH . D 4 HOH A 31 831 831 HOH HOH . D 4 HOH A 32 832 832 HOH HOH . D 4 HOH A 33 833 833 HOH HOH . D 4 HOH A 34 834 834 HOH HOH . D 4 HOH A 35 835 835 HOH HOH . D 4 HOH A 36 836 836 HOH HOH . D 4 HOH A 37 837 837 HOH HOH . D 4 HOH A 38 838 838 HOH HOH . D 4 HOH A 39 839 839 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . B 2 98.475 104.552 100.939 1 11.58 ? C18 DSM 701 A 1 HETATM 2 N N2 DSM . . . B 2 98.599 104.498 102.395 1 11.58 ? N2 DSM 701 A 1 HETATM 3 C C17 DSM . . . B 2 99.334 103.335 102.893 1 16.1 ? C17 DSM 701 A 1 HETATM 4 C C16 DSM . . . B 2 98.42 102.146 103.115 1 15.86 ? C16 DSM 701 A 1 HETATM 5 C C15 DSM . . . B 2 99.134 100.806 103.204 1 10.43 ? C15 DSM 701 A 1 HETATM 6 N N1 DSM . . . B 2 100.206 100.689 102.217 1 9.47 ? N1 DSM 701 A 1 HETATM 7 C C14 DSM . . . B 2 99.752 100.944 100.902 1 11.6 ? C14 DSM 701 A 1 HETATM 8 C C1 DSM . . . B 2 98.447 100.663 100.525 1 10.35 ? C1 DSM 701 A 1 HETATM 9 C C2 DSM . . . B 2 98.019 101.009 99.268 1 12.85 ? C2 DSM 701 A 1 HETATM 10 C C3 DSM . . . B 2 98.864 101.656 98.401 1 14.79 ? C3 DSM 701 A 1 HETATM 11 C C4 DSM . . . B 2 100.151 101.947 98.782 1 11.8 ? C4 DSM 701 A 1 HETATM 12 C C13 DSM . . . B 2 100.612 101.628 100.051 1 12.42 ? C13 DSM 701 A 1 HETATM 13 C C5 DSM . . . B 2 101.996 101.884 100.577 1 12.01 ? C5 DSM 701 A 1 HETATM 14 C C6 DSM . . . B 2 102.791 100.566 100.748 1 7.32 ? C6 DSM 701 A 1 HETATM 15 C C12 DSM . . . B 2 102.224 99.495 101.65 1 10.44 ? C12 DSM 701 A 1 HETATM 16 C C11 DSM . . . B 2 101.001 99.531 102.33 1 12.62 ? C11 DSM 701 A 1 HETATM 17 C C7 DSM . . . B 2 102.993 98.348 101.806 1 13.99 ? C7 DSM 701 A 1 HETATM 18 C C8 DSM . . . B 2 102.593 97.304 102.608 1 14.18 ? C8 DSM 701 A 1 HETATM 19 C C9 DSM . . . B 2 101.406 97.373 103.285 1 6.55 ? C9 DSM 701 A 1 HETATM 20 C C10 DSM . . . B 2 100.605 98.482 103.152 1 9.93 ? C10 DSM 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #