data_8HFJ # _model_server_result.job_id t52trL_1EtLD3UtQuUmKhg _model_server_result.datetime_utc '2024-10-12 19:28:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8HFJ # _exptl.entry_id 8HFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HFJ _cell.length_a 124.92 _cell.length_b 124.92 _cell.length_c 133.778 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 270 n n PA O2A NAP sing 271 n n PA O5B NAP sing 272 n n PA O3 NAP sing 273 n n O2A HOA2 NAP sing 274 n n O5B C5B NAP sing 275 n n C5B C4B NAP sing 276 n n C5B H51A NAP sing 277 n n C5B H52A NAP sing 278 n n C4B O4B NAP sing 279 n n C4B C3B NAP sing 280 n n C4B H4B NAP sing 281 n n O4B C1B NAP sing 282 n n C3B O3B NAP sing 283 n n C3B C2B NAP sing 284 n n C3B H3B NAP sing 285 n n O3B HO3A NAP sing 286 n n C2B O2B NAP sing 287 n n C2B C1B NAP sing 288 n n C2B H2B NAP sing 289 n n O2B P2B NAP sing 290 n n C1B N9A NAP sing 291 n n C1B H1B NAP sing 292 n n N9A C8A NAP sing 293 n y N9A C4A NAP sing 294 n y C8A N7A NAP doub 295 n y C8A H8A NAP sing 296 n n N7A C5A NAP sing 297 n y C5A C6A NAP sing 298 n y C5A C4A NAP doub 299 n y C6A N6A NAP sing 300 n n C6A N1A NAP doub 301 n y N6A H61A NAP sing 302 n n N6A H62A NAP sing 303 n n N1A C2A NAP sing 304 n y C2A N3A NAP doub 305 n y C2A H2A NAP sing 306 n n N3A C4A NAP sing 307 n y O3 PN NAP sing 308 n n PN O1N NAP doub 309 n n PN O2N NAP sing 310 n n PN O5D NAP sing 311 n n O5D C5D NAP sing 312 n n C5D C4D NAP sing 313 n n C5D H51N NAP sing 314 n n C5D H52N NAP sing 315 n n C4D O4D NAP sing 316 n n C4D C3D NAP sing 317 n n C4D H4D NAP sing 318 n n O4D C1D NAP sing 319 n n C3D O3D NAP sing 320 n n C3D C2D NAP sing 321 n n C3D H3D NAP sing 322 n n O3D HO3N NAP sing 323 n n C2D O2D NAP sing 324 n n C2D C1D NAP sing 325 n n C2D H2D NAP sing 326 n n O2D HO2N NAP sing 327 n n C1D N1N NAP sing 328 n n C1D H1D NAP sing 329 n n N1N C2N NAP sing 330 n y N1N C6N NAP doub 331 n y C2N C3N NAP doub 332 n y C2N H2N NAP sing 333 n n C3N C7N NAP sing 334 n n C3N C4N NAP sing 335 n y C7N O7N NAP doub 336 n n C7N N7N NAP sing 337 n n N7N H71N NAP sing 338 n n N7N H72N NAP sing 339 n n C4N C5N NAP doub 340 n y C4N H4N NAP sing 341 n n C5N C6N NAP sing 342 n y C5N H5N NAP sing 343 n n C6N H6N NAP sing 344 n n P2B O1X NAP doub 345 n n P2B O2X NAP sing 346 n n P2B O3X NAP sing 347 n n O2X HOP2 NAP sing 348 n n O3X HOP3 NAP sing 349 n n # _atom_sites.entry_id 8HFJ _atom_sites.fract_transf_matrix[1][1] 0.008005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 1 NAP NAP . F 2 NAP B 1 301 2 NAP NAP . G 2 NAP C 1 301 3 NAP NAP . H 3 L7Z C 1 302 1 L7Z LIG . I 2 NAP D 1 301 4 NAP NAP . J 3 L7Z D 1 302 2 L7Z LIG . K 4 HOH A 1 401 81 HOH HOH . K 4 HOH A 2 402 142 HOH HOH . K 4 HOH A 3 403 180 HOH HOH . K 4 HOH A 4 404 103 HOH HOH . K 4 HOH A 5 405 52 HOH HOH . K 4 HOH A 6 406 69 HOH HOH . K 4 HOH A 7 407 14 HOH HOH . K 4 HOH A 8 408 87 HOH HOH . K 4 HOH A 9 409 255 HOH HOH . K 4 HOH A 10 410 77 HOH HOH . K 4 HOH A 11 411 32 HOH HOH . K 4 HOH A 12 412 62 HOH HOH . K 4 HOH A 13 413 13 HOH HOH . K 4 HOH A 14 414 3 HOH HOH . K 4 HOH A 15 415 273 HOH HOH . K 4 HOH A 16 416 1 HOH HOH . K 4 HOH A 17 417 230 HOH HOH . K 4 HOH A 18 418 57 HOH HOH . K 4 HOH A 19 419 37 HOH HOH . K 4 HOH A 20 420 234 HOH HOH . K 4 HOH A 21 421 26 HOH HOH . K 4 HOH A 22 422 53 HOH HOH . K 4 HOH A 23 423 50 HOH HOH . K 4 HOH A 24 424 147 HOH HOH . K 4 HOH A 25 425 208 HOH HOH . L 4 HOH B 1 401 15 HOH HOH . L 4 HOH B 2 402 73 HOH HOH . L 4 HOH B 3 403 31 HOH HOH . L 4 HOH B 4 404 261 HOH HOH . L 4 HOH B 5 405 246 HOH HOH . L 4 HOH B 6 406 43 HOH HOH . L 4 HOH B 7 407 9 HOH HOH . L 4 HOH B 8 408 186 HOH HOH . L 4 HOH B 9 409 66 HOH HOH . L 4 HOH B 10 410 82 HOH HOH . L 4 HOH B 11 411 49 HOH HOH . L 4 HOH B 12 412 39 HOH HOH . L 4 HOH B 13 413 95 HOH HOH . L 4 HOH B 14 414 34 HOH HOH . L 4 HOH B 15 415 44 HOH HOH . L 4 HOH B 16 416 10 HOH HOH . L 4 HOH B 17 417 12 HOH HOH . L 4 HOH B 18 418 171 HOH HOH . L 4 HOH B 19 419 47 HOH HOH . L 4 HOH B 20 420 161 HOH HOH . L 4 HOH B 21 421 41 HOH HOH . L 4 HOH B 22 422 304 HOH HOH . L 4 HOH B 23 423 130 HOH HOH . L 4 HOH B 24 424 33 HOH HOH . L 4 HOH B 25 425 453 HOH HOH . M 4 HOH C 1 401 132 HOH HOH . M 4 HOH C 2 402 46 HOH HOH . M 4 HOH C 3 403 94 HOH HOH . M 4 HOH C 4 404 68 HOH HOH . M 4 HOH C 5 405 24 HOH HOH . M 4 HOH C 6 406 40 HOH HOH . M 4 HOH C 7 407 48 HOH HOH . M 4 HOH C 8 408 30 HOH HOH . M 4 HOH C 9 409 111 HOH HOH . M 4 HOH C 10 410 21 HOH HOH . M 4 HOH C 11 411 28 HOH HOH . M 4 HOH C 12 412 35 HOH HOH . M 4 HOH C 13 413 22 HOH HOH . M 4 HOH C 14 414 256 HOH HOH . M 4 HOH C 15 415 36 HOH HOH . M 4 HOH C 16 416 212 HOH HOH . M 4 HOH C 17 417 18 HOH HOH . M 4 HOH C 18 418 29 HOH HOH . M 4 HOH C 19 419 143 HOH HOH . M 4 HOH C 20 420 118 HOH HOH . M 4 HOH C 21 421 45 HOH HOH . M 4 HOH C 22 422 51 HOH HOH . M 4 HOH C 23 423 122 HOH HOH . M 4 HOH C 24 424 4 HOH HOH . M 4 HOH C 25 425 457 HOH HOH . M 4 HOH C 26 426 452 HOH HOH . N 4 HOH D 1 401 80 HOH HOH . N 4 HOH D 2 402 205 HOH HOH . N 4 HOH D 3 403 74 HOH HOH . N 4 HOH D 4 404 101 HOH HOH . N 4 HOH D 5 405 23 HOH HOH . N 4 HOH D 6 406 253 HOH HOH . N 4 HOH D 7 407 42 HOH HOH . N 4 HOH D 8 408 60 HOH HOH . N 4 HOH D 9 409 11 HOH HOH . N 4 HOH D 10 410 162 HOH HOH . N 4 HOH D 11 411 17 HOH HOH . N 4 HOH D 12 412 240 HOH HOH . N 4 HOH D 13 413 25 HOH HOH . N 4 HOH D 14 414 112 HOH HOH . N 4 HOH D 15 415 38 HOH HOH . N 4 HOH D 16 416 55 HOH HOH . N 4 HOH D 17 417 8 HOH HOH . N 4 HOH D 18 418 16 HOH HOH . N 4 HOH D 19 419 2 HOH HOH . N 4 HOH D 20 420 54 HOH HOH . N 4 HOH D 21 421 352 HOH HOH . N 4 HOH D 22 422 71 HOH HOH . N 4 HOH D 23 423 199 HOH HOH . N 4 HOH D 24 424 75 HOH HOH . N 4 HOH D 25 425 83 HOH HOH . N 4 HOH D 26 426 90 HOH HOH . N 4 HOH D 27 427 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 -28.167 47.798 12.205 1 16.18 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . E 2 -27.21 48.078 13.229 1 16.54 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . E 2 -29.539 47.894 12.521 1 15.75 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . E 2 -27.91 48.859 11.165 1 16.83 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . E 2 -28.898 49.172 10.239 1 17.76 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . E 2 -28.337 50.016 9.127 1 18.07 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . E 2 -29.325 50.21 8.185 1 17.21 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . E 2 -27.986 51.381 9.591 1 18.09 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . E 2 -26.773 51.745 8.987 1 19.03 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . E 2 -29.082 52.231 9.1 1 17.93 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . E 2 -28.719 53.577 8.917 1 20.09 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . E 2 -29.39 51.559 7.823 1 16.99 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . E 2 -30.731 51.948 7.352 1 15.5 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . E 2 -31.868 51.742 7.947 1 14.99 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . E 2 -32.886 52.208 7.275 1 14.9 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . E 2 -32.395 52.766 6.205 1 14.06 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . E 2 -32.917 53.462 5.037 1 13.53 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . E 2 -34.208 53.685 4.838 1 12.66 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . E 2 -32.042 53.839 4.141 1 13.88 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . E 2 -30.745 53.648 4.279 1 14.13 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . E 2 -30.23 53.031 5.297 1 13.96 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . E 2 -30.984 52.577 6.266 1 14.24 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . E 2 -28.018 46.381 11.536 1 15.45 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . E 2 -26.898 45.448 11.061 1 14.55 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . E 2 -26.971 44.338 11.812 1 15.34 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . E 2 -25.677 46.124 10.895 1 15.49 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . E 2 -27.436 45.103 9.702 1 14.51 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . E 2 -26.602 45.079 8.568 1 14.02 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . E 2 -27.089 44.112 7.537 1 13.62 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . E 2 -26.885 42.811 7.986 1 13.46 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . E 2 -28.568 44.297 7.328 1 13.27 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . E 2 -28.88 44.214 5.952 1 12.36 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . E 2 -29.161 43.19 8.123 1 13.25 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . E 2 -30.449 42.876 7.651 1 12.69 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . E 2 -28.1 42.145 7.975 1 13.83 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . E 2 -28.072 41.143 8.988 1 14.7 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . E 2 -27.702 41.401 10.194 1 15.95 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . E 2 -27.677 40.394 11.146 1 17.5 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . E 2 -27.304 40.609 12.556 1 18.81 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . E 2 -26.708 41.573 12.873 1 21.03 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . E 2 -27.643 39.711 13.412 1 19.04 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . E 2 -28.03 39.129 10.78 1 16.75 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . E 2 -28.383 38.894 9.502 1 16.66 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . E 2 -28.396 39.929 8.618 1 15.79 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . E 2 -29.392 54.815 9.491 1 22.18 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . E 2 -30.795 54.665 9.36 1 18.52 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . E 2 -28.785 55.782 8.637 1 22.49 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . E 2 -28.928 54.83 10.837 1 20.9 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #