data_8HFJ # _model_server_result.job_id ZUN2xi213DoFIhA04JCksg _model_server_result.datetime_utc '2024-10-12 19:27:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8HFJ # _exptl.entry_id 8HFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HFJ _cell.length_a 124.92 _cell.length_b 124.92 _cell.length_c 133.778 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 270 n n PA O2A NAP sing 271 n n PA O5B NAP sing 272 n n PA O3 NAP sing 273 n n O2A HOA2 NAP sing 274 n n O5B C5B NAP sing 275 n n C5B C4B NAP sing 276 n n C5B H51A NAP sing 277 n n C5B H52A NAP sing 278 n n C4B O4B NAP sing 279 n n C4B C3B NAP sing 280 n n C4B H4B NAP sing 281 n n O4B C1B NAP sing 282 n n C3B O3B NAP sing 283 n n C3B C2B NAP sing 284 n n C3B H3B NAP sing 285 n n O3B HO3A NAP sing 286 n n C2B O2B NAP sing 287 n n C2B C1B NAP sing 288 n n C2B H2B NAP sing 289 n n O2B P2B NAP sing 290 n n C1B N9A NAP sing 291 n n C1B H1B NAP sing 292 n n N9A C8A NAP sing 293 n y N9A C4A NAP sing 294 n y C8A N7A NAP doub 295 n y C8A H8A NAP sing 296 n n N7A C5A NAP sing 297 n y C5A C6A NAP sing 298 n y C5A C4A NAP doub 299 n y C6A N6A NAP sing 300 n n C6A N1A NAP doub 301 n y N6A H61A NAP sing 302 n n N6A H62A NAP sing 303 n n N1A C2A NAP sing 304 n y C2A N3A NAP doub 305 n y C2A H2A NAP sing 306 n n N3A C4A NAP sing 307 n y O3 PN NAP sing 308 n n PN O1N NAP doub 309 n n PN O2N NAP sing 310 n n PN O5D NAP sing 311 n n O5D C5D NAP sing 312 n n C5D C4D NAP sing 313 n n C5D H51N NAP sing 314 n n C5D H52N NAP sing 315 n n C4D O4D NAP sing 316 n n C4D C3D NAP sing 317 n n C4D H4D NAP sing 318 n n O4D C1D NAP sing 319 n n C3D O3D NAP sing 320 n n C3D C2D NAP sing 321 n n C3D H3D NAP sing 322 n n O3D HO3N NAP sing 323 n n C2D O2D NAP sing 324 n n C2D C1D NAP sing 325 n n C2D H2D NAP sing 326 n n O2D HO2N NAP sing 327 n n C1D N1N NAP sing 328 n n C1D H1D NAP sing 329 n n N1N C2N NAP sing 330 n y N1N C6N NAP doub 331 n y C2N C3N NAP doub 332 n y C2N H2N NAP sing 333 n n C3N C7N NAP sing 334 n n C3N C4N NAP sing 335 n y C7N O7N NAP doub 336 n n C7N N7N NAP sing 337 n n N7N H71N NAP sing 338 n n N7N H72N NAP sing 339 n n C4N C5N NAP doub 340 n y C4N H4N NAP sing 341 n n C5N C6N NAP sing 342 n y C5N H5N NAP sing 343 n n C6N H6N NAP sing 344 n n P2B O1X NAP doub 345 n n P2B O2X NAP sing 346 n n P2B O3X NAP sing 347 n n O2X HOP2 NAP sing 348 n n O3X HOP3 NAP sing 349 n n # _atom_sites.entry_id 8HFJ _atom_sites.fract_transf_matrix[1][1] 0.008005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 1 NAP NAP . F 2 NAP B 1 301 2 NAP NAP . G 2 NAP C 1 301 3 NAP NAP . H 3 L7Z C 1 302 1 L7Z LIG . I 2 NAP D 1 301 4 NAP NAP . J 3 L7Z D 1 302 2 L7Z LIG . K 4 HOH A 1 401 81 HOH HOH . K 4 HOH A 2 402 142 HOH HOH . K 4 HOH A 3 403 180 HOH HOH . K 4 HOH A 4 404 103 HOH HOH . K 4 HOH A 5 405 52 HOH HOH . K 4 HOH A 6 406 69 HOH HOH . K 4 HOH A 7 407 14 HOH HOH . K 4 HOH A 8 408 87 HOH HOH . K 4 HOH A 9 409 255 HOH HOH . K 4 HOH A 10 410 77 HOH HOH . K 4 HOH A 11 411 32 HOH HOH . K 4 HOH A 12 412 62 HOH HOH . K 4 HOH A 13 413 13 HOH HOH . K 4 HOH A 14 414 3 HOH HOH . K 4 HOH A 15 415 273 HOH HOH . K 4 HOH A 16 416 1 HOH HOH . K 4 HOH A 17 417 230 HOH HOH . K 4 HOH A 18 418 57 HOH HOH . K 4 HOH A 19 419 37 HOH HOH . K 4 HOH A 20 420 234 HOH HOH . K 4 HOH A 21 421 26 HOH HOH . K 4 HOH A 22 422 53 HOH HOH . K 4 HOH A 23 423 50 HOH HOH . K 4 HOH A 24 424 147 HOH HOH . K 4 HOH A 25 425 208 HOH HOH . L 4 HOH B 1 401 15 HOH HOH . L 4 HOH B 2 402 73 HOH HOH . L 4 HOH B 3 403 31 HOH HOH . L 4 HOH B 4 404 261 HOH HOH . L 4 HOH B 5 405 246 HOH HOH . L 4 HOH B 6 406 43 HOH HOH . L 4 HOH B 7 407 9 HOH HOH . L 4 HOH B 8 408 186 HOH HOH . L 4 HOH B 9 409 66 HOH HOH . L 4 HOH B 10 410 82 HOH HOH . L 4 HOH B 11 411 49 HOH HOH . L 4 HOH B 12 412 39 HOH HOH . L 4 HOH B 13 413 95 HOH HOH . L 4 HOH B 14 414 34 HOH HOH . L 4 HOH B 15 415 44 HOH HOH . L 4 HOH B 16 416 10 HOH HOH . L 4 HOH B 17 417 12 HOH HOH . L 4 HOH B 18 418 171 HOH HOH . L 4 HOH B 19 419 47 HOH HOH . L 4 HOH B 20 420 161 HOH HOH . L 4 HOH B 21 421 41 HOH HOH . L 4 HOH B 22 422 304 HOH HOH . L 4 HOH B 23 423 130 HOH HOH . L 4 HOH B 24 424 33 HOH HOH . L 4 HOH B 25 425 453 HOH HOH . M 4 HOH C 1 401 132 HOH HOH . M 4 HOH C 2 402 46 HOH HOH . M 4 HOH C 3 403 94 HOH HOH . M 4 HOH C 4 404 68 HOH HOH . M 4 HOH C 5 405 24 HOH HOH . M 4 HOH C 6 406 40 HOH HOH . M 4 HOH C 7 407 48 HOH HOH . M 4 HOH C 8 408 30 HOH HOH . M 4 HOH C 9 409 111 HOH HOH . M 4 HOH C 10 410 21 HOH HOH . M 4 HOH C 11 411 28 HOH HOH . M 4 HOH C 12 412 35 HOH HOH . M 4 HOH C 13 413 22 HOH HOH . M 4 HOH C 14 414 256 HOH HOH . M 4 HOH C 15 415 36 HOH HOH . M 4 HOH C 16 416 212 HOH HOH . M 4 HOH C 17 417 18 HOH HOH . M 4 HOH C 18 418 29 HOH HOH . M 4 HOH C 19 419 143 HOH HOH . M 4 HOH C 20 420 118 HOH HOH . M 4 HOH C 21 421 45 HOH HOH . M 4 HOH C 22 422 51 HOH HOH . M 4 HOH C 23 423 122 HOH HOH . M 4 HOH C 24 424 4 HOH HOH . M 4 HOH C 25 425 457 HOH HOH . M 4 HOH C 26 426 452 HOH HOH . N 4 HOH D 1 401 80 HOH HOH . N 4 HOH D 2 402 205 HOH HOH . N 4 HOH D 3 403 74 HOH HOH . N 4 HOH D 4 404 101 HOH HOH . N 4 HOH D 5 405 23 HOH HOH . N 4 HOH D 6 406 253 HOH HOH . N 4 HOH D 7 407 42 HOH HOH . N 4 HOH D 8 408 60 HOH HOH . N 4 HOH D 9 409 11 HOH HOH . N 4 HOH D 10 410 162 HOH HOH . N 4 HOH D 11 411 17 HOH HOH . N 4 HOH D 12 412 240 HOH HOH . N 4 HOH D 13 413 25 HOH HOH . N 4 HOH D 14 414 112 HOH HOH . N 4 HOH D 15 415 38 HOH HOH . N 4 HOH D 16 416 55 HOH HOH . N 4 HOH D 17 417 8 HOH HOH . N 4 HOH D 18 418 16 HOH HOH . N 4 HOH D 19 419 2 HOH HOH . N 4 HOH D 20 420 54 HOH HOH . N 4 HOH D 21 421 352 HOH HOH . N 4 HOH D 22 422 71 HOH HOH . N 4 HOH D 23 423 199 HOH HOH . N 4 HOH D 24 424 75 HOH HOH . N 4 HOH D 25 425 83 HOH HOH . N 4 HOH D 26 426 90 HOH HOH . N 4 HOH D 27 427 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 -50.874 30.971 -15.528 1 12.25 ? PA NAP 301 B 1 HETATM 2 O O1A NAP . . . F 2 -51.263 30.145 -16.574 1 12.49 ? O1A NAP 301 B 1 HETATM 3 O O2A NAP . . . F 2 -50.431 32.219 -15.924 1 12.39 ? O2A NAP 301 B 1 HETATM 4 O O5B NAP . . . F 2 -52.154 31.154 -14.737 1 12.13 ? O5B NAP 301 B 1 HETATM 5 C C5B NAP . . . F 2 -52.459 32.313 -14.046 1 12.32 ? C5B NAP 301 B 1 HETATM 6 C C4B NAP . . . F 2 -53.451 32.099 -12.939 1 12.59 ? C4B NAP 301 B 1 HETATM 7 O O4B NAP . . . F 2 -53.216 33.102 -12.01 1 12.95 ? O4B NAP 301 B 1 HETATM 8 C C3B NAP . . . F 2 -54.855 32.322 -13.381 1 12.76 ? C3B NAP 301 B 1 HETATM 9 O O3B NAP . . . F 2 -55.777 31.444 -12.786 1 11.9 ? O3B NAP 301 B 1 HETATM 10 C C2B NAP . . . F 2 -55.103 33.721 -12.933 1 13.4 ? C2B NAP 301 B 1 HETATM 11 O O2B NAP . . . F 2 -56.477 34.036 -12.84 1 14.94 ? O2B NAP 301 B 1 HETATM 12 C C1B NAP . . . F 2 -54.366 33.768 -11.643 1 13.18 ? C1B NAP 301 B 1 HETATM 13 N N9A NAP . . . F 2 -54.119 35.158 -11.255 1 13.27 ? N9A NAP 301 B 1 HETATM 14 C C8A NAP . . . F 2 -53.329 36.015 -11.851 1 13.22 ? C8A NAP 301 B 1 HETATM 15 N N7A NAP . . . F 2 -53.348 37.211 -11.291 1 12.91 ? N7A NAP 301 B 1 HETATM 16 C C5A NAP . . . F 2 -54.179 37.142 -10.275 1 12.76 ? C5A NAP 301 B 1 HETATM 17 C C6A NAP . . . F 2 -54.658 38.032 -9.236 1 12.3 ? C6A NAP 301 B 1 HETATM 18 N N6A NAP . . . F 2 -54.252 39.302 -9.147 1 12.04 ? N6A NAP 301 B 1 HETATM 19 N N1A NAP . . . F 2 -55.501 37.531 -8.359 1 12.3 ? N1A NAP 301 B 1 HETATM 20 C C2A NAP . . . F 2 -55.916 36.316 -8.387 1 12.09 ? C2A NAP 301 B 1 HETATM 21 N N3A NAP . . . F 2 -55.54 35.487 -9.296 1 12.45 ? N3A NAP 301 B 1 HETATM 22 C C4A NAP . . . F 2 -54.683 35.8 -10.253 1 12.97 ? C4A NAP 301 B 1 HETATM 23 O O3 NAP . . . F 2 -49.765 30.337 -14.613 1 12.41 ? O3 NAP 301 B 1 HETATM 24 P PN NAP . . . F 2 -49.41 28.956 -14.011 1 12.08 ? PN NAP 301 B 1 HETATM 25 O O1N NAP . . . F 2 -48.329 28.431 -14.716 1 11.93 ? O1N NAP 301 B 1 HETATM 26 O O2N NAP . . . F 2 -50.592 28.207 -13.82 1 13.04 ? O2N NAP 301 B 1 HETATM 27 O O5D NAP . . . F 2 -48.947 29.325 -12.651 1 11.27 ? O5D NAP 301 B 1 HETATM 28 C C5D NAP . . . F 2 -49.446 28.816 -11.472 1 11.14 ? C5D NAP 301 B 1 HETATM 29 C C4D NAP . . . F 2 -48.417 29.029 -10.439 1 11.16 ? C4D NAP 301 B 1 HETATM 30 O O4D NAP . . . F 2 -47.317 28.269 -10.779 1 11.07 ? O4D NAP 301 B 1 HETATM 31 C C3D NAP . . . F 2 -47.94 30.442 -10.394 1 11.1 ? C3D NAP 301 B 1 HETATM 32 O O3D NAP . . . F 2 -47.866 30.833 -9.048 1 11 ? O3D NAP 301 B 1 HETATM 33 C C2D NAP . . . F 2 -46.583 30.384 -11.007 1 10.94 ? C2D NAP 301 B 1 HETATM 34 O O2D NAP . . . F 2 -45.76 31.437 -10.585 1 10.63 ? O2D NAP 301 B 1 HETATM 35 C C1D NAP . . . F 2 -46.132 29.005 -10.663 1 11.04 ? C1D NAP 301 B 1 HETATM 36 N N1N NAP . . . F 2 -45.142 28.426 -11.553 1 11.08 ? N1N NAP 301 B 1 HETATM 37 C C2N NAP . . . F 2 -45.498 28.116 -12.765 1 10.93 ? C2N NAP 301 B 1 HETATM 38 C C3N NAP . . . F 2 -44.625 27.56 -13.647 1 10.68 ? C3N NAP 301 B 1 HETATM 39 C C7N NAP . . . F 2 -45.099 27.239 -14.994 1 10.46 ? C7N NAP 301 B 1 HETATM 40 O O7N NAP . . . F 2 -44.418 26.743 -15.76 1 10.31 ? O7N NAP 301 B 1 HETATM 41 N N7N NAP . . . F 2 -46.284 27.497 -15.349 1 10.65 ? N7N NAP 301 B 1 HETATM 42 C C4N NAP . . . F 2 -43.34 27.342 -13.241 1 10.89 ? C4N NAP 301 B 1 HETATM 43 C C5N NAP . . . F 2 -42.973 27.675 -11.97 1 11.08 ? C5N NAP 301 B 1 HETATM 44 C C6N NAP . . . F 2 -43.907 28.222 -11.143 1 10.9 ? C6N NAP 301 B 1 HETATM 45 P P2B NAP . . . F 2 -57.219 35.001 -13.746 1 15.66 ? P2B NAP 301 B 1 HETATM 46 O O1X NAP . . . F 2 -56.618 36.177 -13.351 1 15.36 ? O1X NAP 301 B 1 HETATM 47 O O2X NAP . . . F 2 -56.867 34.669 -15.052 1 14.23 ? O2X NAP 301 B 1 HETATM 48 O O3X NAP . . . F 2 -58.558 34.864 -13.361 1 15.06 ? O3X NAP 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #