data_8HFK # _model_server_result.job_id gOhdIWtfzUmy-JGBrBjvwQ _model_server_result.datetime_utc '2024-11-28 18:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 8HFK # _exptl.entry_id 8HFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-bromanyl-1-(4-bromanyl-2-oxidanyl-phenyl)ethanone _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HFK _cell.length_a 124.867 _cell.length_b 124.867 _cell.length_c 133.195 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C8 H6 Br2 O2' _chem_comp.formula_weight 293.94 _chem_comp.id L8U _chem_comp.mon_nstd_flag . _chem_comp.name 2-bromanyl-1-(4-bromanyl-2-oxidanyl-phenyl)ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C06 L8U doub 173 n y C01 C02 L8U sing 174 n y BR2 C02 L8U sing 175 n n C06 C05 L8U sing 176 n y C02 C03 L8U doub 177 n y C08 C07 L8U sing 178 n n C08 BR1 L8U sing 179 n n C05 C07 L8U sing 180 n n C05 C04 L8U doub 181 n y C03 C04 L8U sing 182 n y C07 O09 L8U doub 183 n n C04 O10 L8U sing 184 n n C01 H1 L8U sing 185 n n C03 H2 L8U sing 186 n n C06 H3 L8U sing 187 n n C08 H4 L8U sing 188 n n C08 H5 L8U sing 189 n n O10 H6 L8U sing 190 n n # _atom_sites.entry_id 8HFK _atom_sites.fract_transf_matrix[1][1] 0.008009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 1 NAP NAP . F 3 L8U A 1 302 1 L8U LIG . G 2 NAP B 1 301 2 NAP NAP . H 3 L8U B 1 302 3 L8U LIG . I 2 NAP C 1 301 3 NAP NAP . J 3 L8U C 1 302 2 L8U LIG . K 2 NAP D 1 301 4 NAP NAP . L 3 L8U D 1 302 4 L8U LIG . M 4 HOH A 1 401 52 HOH HOH . M 4 HOH A 2 402 54 HOH HOH . M 4 HOH A 3 403 6 HOH HOH . M 4 HOH A 4 404 22 HOH HOH . M 4 HOH A 5 405 3 HOH HOH . M 4 HOH A 6 406 182 HOH HOH . M 4 HOH A 7 407 31 HOH HOH . M 4 HOH A 8 408 94 HOH HOH . M 4 HOH A 9 409 126 HOH HOH . M 4 HOH A 10 410 30 HOH HOH . M 4 HOH A 11 411 122 HOH HOH . M 4 HOH A 12 412 7 HOH HOH . N 4 HOH B 1 401 29 HOH HOH . N 4 HOH B 2 402 23 HOH HOH . N 4 HOH B 3 403 66 HOH HOH . N 4 HOH B 4 404 10 HOH HOH . N 4 HOH B 5 405 24 HOH HOH . N 4 HOH B 6 406 32 HOH HOH . N 4 HOH B 7 407 116 HOH HOH . N 4 HOH B 8 408 5 HOH HOH . N 4 HOH B 9 409 44 HOH HOH . N 4 HOH B 10 410 4 HOH HOH . O 4 HOH C 1 401 34 HOH HOH . O 4 HOH C 2 402 38 HOH HOH . O 4 HOH C 3 403 27 HOH HOH . O 4 HOH C 4 404 57 HOH HOH . O 4 HOH C 5 405 40 HOH HOH . O 4 HOH C 6 406 21 HOH HOH . O 4 HOH C 7 407 43 HOH HOH . O 4 HOH C 8 408 117 HOH HOH . O 4 HOH C 9 409 113 HOH HOH . O 4 HOH C 10 410 48 HOH HOH . O 4 HOH C 11 411 33 HOH HOH . O 4 HOH C 12 412 58 HOH HOH . O 4 HOH C 13 413 93 HOH HOH . O 4 HOH C 14 414 215 HOH HOH . O 4 HOH C 15 415 15 HOH HOH . O 4 HOH C 16 416 331 HOH HOH . P 4 HOH D 1 401 85 HOH HOH . P 4 HOH D 2 402 59 HOH HOH . P 4 HOH D 3 403 42 HOH HOH . P 4 HOH D 4 404 20 HOH HOH . P 4 HOH D 5 405 9 HOH HOH . P 4 HOH D 6 406 102 HOH HOH . P 4 HOH D 7 407 19 HOH HOH . P 4 HOH D 8 408 8 HOH HOH . P 4 HOH D 9 409 28 HOH HOH . P 4 HOH D 10 410 202 HOH HOH . P 4 HOH D 11 411 1 HOH HOH . P 4 HOH D 12 412 26 HOH HOH . P 4 HOH D 13 413 60 HOH HOH . P 4 HOH D 14 414 25 HOH HOH . P 4 HOH D 15 415 13 HOH HOH . P 4 HOH D 16 416 16 HOH HOH . P 4 HOH D 17 417 332 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 L8U . . . J 3 38.845 25.767 51.126 1 82.72 ? C01 L8U 302 C 1 HETATM 2 C C02 L8U . . . J 3 37.985 25.147 50.236 1 89.21 ? C02 L8U 302 C 1 HETATM 3 C C03 L8U . . . J 3 37.854 25.628 48.945 1 85.89 ? C03 L8U 302 C 1 HETATM 4 C C04 L8U . . . J 3 38.595 26.73 48.557 1 82.05 ? C04 L8U 302 C 1 HETATM 5 C C05 L8U . . . J 3 39.455 27.334 49.446 1 76.96 ? C05 L8U 302 C 1 HETATM 6 C C06 L8U . . . J 3 39.591 26.866 50.735 1 76.94 ? C06 L8U 302 C 1 HETATM 7 C C07 L8U . . . J 3 40.246 28.529 48.963 1 66.69 ? C07 L8U 302 C 1 HETATM 8 C C08 L8U . . . J 3 41.646 28.78 49.473 1 61.27 ? C08 L8U 302 C 1 HETATM 9 O O09 L8U . . . J 3 39.789 29.266 48.167 1 61.41 ? O09 L8U 302 C 1 HETATM 10 O O10 L8U . . . J 3 38.51 27.249 47.264 1 79.05 ? O10 L8U 302 C 1 HETATM 11 BR BR1 L8U . . . J 3 42.273 30.255 48.414 1 55.27 ? BR1 L8U 302 C 1 HETATM 12 BR BR2 L8U . . . J 3 36.964 23.602 50.807 1 128.62 ? BR2 L8U 302 C 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 1040 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #