data_8HFK
#
_model_server_result.job_id            1vdSYIqQl_MtUIyd5zBiKg 
_model_server_result.datetime_utc      '2024-10-12 19:22:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hfk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    8HFK 
#
_exptl.entry_id    8HFK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              293.94 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-bromanyl-1-(4-bromanyl-2-oxidanyl-phenyl)ethanone 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8HFK 
_cell.length_a            124.867 
_cell.length_b            124.867 
_cell.length_c            133.195 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8HFK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C8 H6 Br2 O2' 
_chem_comp.formula_weight    293.94 
_chem_comp.id                L8U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-bromanyl-1-(4-bromanyl-2-oxidanyl-phenyl)ethanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C06 L8U doub 173 n y 
C01 C02 L8U sing 174 n y 
BR2 C02 L8U sing 175 n n 
C06 C05 L8U sing 176 n y 
C02 C03 L8U doub 177 n y 
C08 C07 L8U sing 178 n n 
C08 BR1 L8U sing 179 n n 
C05 C07 L8U sing 180 n n 
C05 C04 L8U doub 181 n y 
C03 C04 L8U sing 182 n y 
C07 O09 L8U doub 183 n n 
C04 O10 L8U sing 184 n n 
C01 H1 L8U sing 185 n n 
C03 H2 L8U sing 186 n n 
C06 H3 L8U sing 187 n n 
C08 H4 L8U sing 188 n n 
C08 H5 L8U sing 189 n n 
O10 H6 L8U sing 190 n n 
#
_atom_sites.entry_id                     8HFK 
_atom_sites.fract_transf_matrix[1][1]    0.008009 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 301 1 NAP NAP . 
F 3 L8U A 1 302 1 L8U LIG . 
G 2 NAP B 1 301 2 NAP NAP . 
H 3 L8U B 1 302 3 L8U LIG . 
I 2 NAP C 1 301 3 NAP NAP . 
J 3 L8U C 1 302 2 L8U LIG . 
K 2 NAP D 1 301 4 NAP NAP . 
L 3 L8U D 1 302 4 L8U LIG . 
M 4 HOH A 1 401 52 HOH HOH . 
M 4 HOH A 2 402 54 HOH HOH . 
M 4 HOH A 3 403 6 HOH HOH . 
M 4 HOH A 4 404 22 HOH HOH . 
M 4 HOH A 5 405 3 HOH HOH . 
M 4 HOH A 6 406 182 HOH HOH . 
M 4 HOH A 7 407 31 HOH HOH . 
M 4 HOH A 8 408 94 HOH HOH . 
M 4 HOH A 9 409 126 HOH HOH . 
M 4 HOH A 10 410 30 HOH HOH . 
M 4 HOH A 11 411 122 HOH HOH . 
M 4 HOH A 12 412 7 HOH HOH . 
N 4 HOH B 1 401 29 HOH HOH . 
N 4 HOH B 2 402 23 HOH HOH . 
N 4 HOH B 3 403 66 HOH HOH . 
N 4 HOH B 4 404 10 HOH HOH . 
N 4 HOH B 5 405 24 HOH HOH . 
N 4 HOH B 6 406 32 HOH HOH . 
N 4 HOH B 7 407 116 HOH HOH . 
N 4 HOH B 8 408 5 HOH HOH . 
N 4 HOH B 9 409 44 HOH HOH . 
N 4 HOH B 10 410 4 HOH HOH . 
O 4 HOH C 1 401 34 HOH HOH . 
O 4 HOH C 2 402 38 HOH HOH . 
O 4 HOH C 3 403 27 HOH HOH . 
O 4 HOH C 4 404 57 HOH HOH . 
O 4 HOH C 5 405 40 HOH HOH . 
O 4 HOH C 6 406 21 HOH HOH . 
O 4 HOH C 7 407 43 HOH HOH . 
O 4 HOH C 8 408 117 HOH HOH . 
O 4 HOH C 9 409 113 HOH HOH . 
O 4 HOH C 10 410 48 HOH HOH . 
O 4 HOH C 11 411 33 HOH HOH . 
O 4 HOH C 12 412 58 HOH HOH . 
O 4 HOH C 13 413 93 HOH HOH . 
O 4 HOH C 14 414 215 HOH HOH . 
O 4 HOH C 15 415 15 HOH HOH . 
O 4 HOH C 16 416 331 HOH HOH . 
P 4 HOH D 1 401 85 HOH HOH . 
P 4 HOH D 2 402 59 HOH HOH . 
P 4 HOH D 3 403 42 HOH HOH . 
P 4 HOH D 4 404 20 HOH HOH . 
P 4 HOH D 5 405 9 HOH HOH . 
P 4 HOH D 6 406 102 HOH HOH . 
P 4 HOH D 7 407 19 HOH HOH . 
P 4 HOH D 8 408 8 HOH HOH . 
P 4 HOH D 9 409 28 HOH HOH . 
P 4 HOH D 10 410 202 HOH HOH . 
P 4 HOH D 11 411 1 HOH HOH . 
P 4 HOH D 12 412 26 HOH HOH . 
P 4 HOH D 13 413 60 HOH HOH . 
P 4 HOH D 14 414 25 HOH HOH . 
P 4 HOH D 15 415 13 HOH HOH . 
P 4 HOH D 16 416 16 HOH HOH . 
P 4 HOH D 17 417 332 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 L8U . . . L 3 28.574 35.261 18.053 1 63.75 ? C01 L8U 302 D 1 
HETATM 2 C C02 L8U . . . L 3 28.571 34.133 18.845 1 69.64 ? C02 L8U 302 D 1 
HETATM 3 C C03 L8U . . . L 3 29.1 34.093 20.112 1 63.27 ? C03 L8U 302 D 1 
HETATM 4 C C04 L8U . . . L 3 29.653 35.238 20.612 1 62.36 ? C04 L8U 302 D 1 
HETATM 5 C C05 L8U . . . L 3 29.651 36.368 19.827 1 57.21 ? C05 L8U 302 D 1 
HETATM 6 C C06 L8U . . . L 3 29.125 36.408 18.556 1 57.5 ? C06 L8U 302 D 1 
HETATM 7 C C07 L8U . . . L 3 30.253 37.624 20.366 1 51.91 ? C07 L8U 302 D 1 
HETATM 8 C C08 L8U . . . L 3 30.01 38.947 19.642 1 48.28 ? C08 L8U 302 D 1 
HETATM 9 O O09 L8U . . . L 3 30.92 37.609 21.346 1 52.44 ? O09 L8U 302 D 1 
HETATM 10 O O10 L8U . . . L 3 30.2 35.254 21.902 1 67.41 ? O10 L8U 302 D 1 
HETATM 11 BR BR1 L8U . . . L 3 30.819 40.393 20.652 1 44.54 ? BR1 L8U 302 D 1 
HETATM 12 BR BR2 L8U . . . L 3 27.787 32.51 18.126 1 127.41 ? BR2 L8U 302 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#