data_8HG7 # _model_server_result.job_id F5imdxWJbexhTVYUFkrmHw _model_server_result.datetime_utc '2024-12-21 12:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8HG7 # _exptl.entry_id 8HG7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 424.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[(4-ethoxyphenyl)methyl]phenyl]-6-methylsulfanyl-oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8HG7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 259 A CYS 255 1_555 A SG CYS 515 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? disulf ? disulf2 A SG CYS 349 A CYS 345 1_555 A SG CYS 355 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? disulf ? disulf3 A SG CYS 359 A CYS 355 1_555 A SG CYS 365 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? disulf ? disulf4 A SG CYS 521 A CYS 517 1_555 A SG CYS 526 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc1 A O ALA 77 A ALA 73 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 A O ILE 80 A ILE 76 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A O ALA 393 A ALA 389 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 A OG SER 396 A SER 392 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 A OG SER 397 A SER 393 1_555 E NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C21 H25 Cl O5 S' _chem_comp.formula_weight 424.938 _chem_comp.id LFL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[(4-ethoxyphenyl)methyl]phenyl]-6-methylsulfanyl-oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sotagliflozin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C17 LFL sing 194 n n O4 C16 LFL sing 195 n n C16 C17 LFL sing 196 n n C16 C15 LFL sing 197 n n C17 C18 LFL sing 198 n n O2 C15 LFL sing 199 n n C18 S1 LFL sing 200 n n C18 O1 LFL sing 201 n n C15 C14 LFL sing 202 n n S1 C19 LFL sing 203 n n C14 O1 LFL sing 204 n n C14 C11 LFL sing 205 n n C11 C12 LFL doub 206 n y C11 C10 LFL sing 207 n y C12 C13 LFL sing 208 n y C10 C8 LFL doub 209 n y C13 C9 LFL doub 210 n y C8 C9 LFL sing 211 n y C8 C7 LFL sing 212 n n C9 CL1 LFL sing 213 n n C7 C4 LFL sing 214 n n C3 C4 LFL doub 215 n y C3 C2 LFL sing 216 n y C4 C5 LFL sing 217 n y C2 C1 LFL doub 218 n y C5 C6 LFL doub 219 n y C1 C6 LFL sing 220 n y C1 O5 LFL sing 221 n n C20 O5 LFL sing 222 n n C20 C21 LFL sing 223 n n C2 H1 LFL sing 224 n n C3 H2 LFL sing 225 n n C5 H3 LFL sing 226 n n C6 H4 LFL sing 227 n n C7 H5 LFL sing 228 n n C7 H6 LFL sing 229 n n C10 H7 LFL sing 230 n n C12 H8 LFL sing 231 n n C13 H9 LFL sing 232 n n C14 H10 LFL sing 233 n n C15 H11 LFL sing 234 n n C16 H12 LFL sing 235 n n C17 H13 LFL sing 236 n n C18 H14 LFL sing 237 n n O2 H15 LFL sing 238 n n O3 H16 LFL sing 239 n n O4 H17 LFL sing 240 n n C19 H18 LFL sing 241 n n C19 H19 LFL sing 242 n n C19 H20 LFL sing 243 n n C20 H21 LFL sing 244 n n C20 H22 LFL sing 245 n n C21 H23 LFL sing 246 n n C21 H24 LFL sing 247 n n C21 H25 LFL sing 248 n n # _atom_sites.entry_id 8HG7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 LFL A 1 802 901 LFL sot . E 5 NA A 1 803 1 NA NA . F 6 HOH A 1 901 2 HOH HOH . F 6 HOH A 2 902 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFL . . . D 4 67.175 66.795 81.008 1 62.99 ? C1 LFL 802 A 1 HETATM 2 C C2 LFL . . . D 4 66.779 67.159 79.722 1 67.89 ? C2 LFL 802 A 1 HETATM 3 C C3 LFL . . . D 4 67.389 66.612 78.621 1 62.65 ? C3 LFL 802 A 1 HETATM 4 C C4 LFL . . . D 4 68.406 65.686 78.755 1 69.52 ? C4 LFL 802 A 1 HETATM 5 C C5 LFL . . . D 4 68.795 65.326 80.04 1 72.15 ? C5 LFL 802 A 1 HETATM 6 C C6 LFL . . . D 4 68.193 65.868 81.164 1 65.1 ? C6 LFL 802 A 1 HETATM 7 C C7 LFL . . . D 4 69.065 65.103 77.526 1 85.32 ? C7 LFL 802 A 1 HETATM 8 C C8 LFL . . . D 4 69.447 66.21 76.563 1 80.21 ? C8 LFL 802 A 1 HETATM 9 C C9 LFL . . . D 4 70.552 67.022 76.779 1 86.65 ? C9 LFL 802 A 1 HETATM 10 CL CL1 LFL . . . D 4 71.538 66.733 78.173 1 111.87 ? CL1 LFL 802 A 1 HETATM 11 C C10 LFL . . . D 4 68.659 66.48 75.446 1 78.71 ? C10 LFL 802 A 1 HETATM 12 C C11 LFL . . . D 4 68.955 67.498 74.544 1 83.85 ? C11 LFL 802 A 1 HETATM 13 C C12 LFL . . . D 4 70.076 68.28 74.795 1 95.43 ? C12 LFL 802 A 1 HETATM 14 C C13 LFL . . . D 4 70.879 68.057 75.913 1 96.6 ? C13 LFL 802 A 1 HETATM 15 C C14 LFL . . . D 4 68.116 67.764 73.318 1 80.46 ? C14 LFL 802 A 1 HETATM 16 C C15 LFL . . . D 4 67.249 66.601 72.806 1 75.72 ? C15 LFL 802 A 1 HETATM 17 C C16 LFL . . . D 4 66.476 67.054 71.582 1 69.11 ? C16 LFL 802 A 1 HETATM 18 C C17 LFL . . . D 4 65.656 68.299 71.912 1 74.18 ? C17 LFL 802 A 1 HETATM 19 C C18 LFL . . . D 4 66.566 69.372 72.476 1 85.86 ? C18 LFL 802 A 1 HETATM 20 O O1 LFL . . . D 4 67.261 68.876 73.621 1 86.72 ? O1 LFL 802 A 1 HETATM 21 O O2 LFL . . . D 4 68.046 65.474 72.452 1 70.85 ? O2 LFL 802 A 1 HETATM 22 O O3 LFL . . . D 4 65.024 68.795 70.749 1 75.99 ? O3 LFL 802 A 1 HETATM 23 S S1 LFL . . . D 4 65.562 70.811 72.868 1 99.45 ? S1 LFL 802 A 1 HETATM 24 O O4 LFL . . . D 4 65.622 65.996 71.187 1 62.4 ? O4 LFL 802 A 1 HETATM 25 C C19 LFL . . . D 4 66.955 71.953 73.187 1 92.32 ? C19 LFL 802 A 1 HETATM 26 O O5 LFL . . . D 4 66.626 67.284 82.158 1 62.59 ? O5 LFL 802 A 1 HETATM 27 C C20 LFL . . . D 4 65.861 68.497 82.15 1 64.08 ? C20 LFL 802 A 1 HETATM 28 C C21 LFL . . . D 4 65.003 68.485 83.346 1 83.03 ? C21 LFL 802 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #