data_8HG9 # _model_server_result.job_id 4s76Ah1Eha7vYfqHihDdcQ _model_server_result.datetime_utc '2025-09-14 01:46:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8HG9 # _exptl.entry_id 8HG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 8HG9 _cell.length_a 54.634 _cell.length_b 99.231 _cell.length_c 94.424 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8HG9 _atom_sites.fract_transf_matrix[1][1] 0.018304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005418 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 2 HEM HEM . D 2 HEM B 1 501 1 HEM HEM . E 3 HOH A 1 601 12 HOH HOH . E 3 HOH A 2 602 57 HOH HOH . E 3 HOH A 3 603 6 HOH HOH . E 3 HOH A 4 604 11 HOH HOH . E 3 HOH A 5 605 50 HOH HOH . E 3 HOH A 6 606 54 HOH HOH . E 3 HOH A 7 607 55 HOH HOH . E 3 HOH A 8 608 8 HOH HOH . E 3 HOH A 9 609 43 HOH HOH . E 3 HOH A 10 610 15 HOH HOH . E 3 HOH A 11 611 31 HOH HOH . E 3 HOH A 12 612 46 HOH HOH . E 3 HOH A 13 613 36 HOH HOH . E 3 HOH A 14 614 38 HOH HOH . E 3 HOH A 15 615 29 HOH HOH . E 3 HOH A 16 616 9 HOH HOH . E 3 HOH A 17 617 51 HOH HOH . E 3 HOH A 18 618 28 HOH HOH . E 3 HOH A 19 619 22 HOH HOH . E 3 HOH A 20 620 52 HOH HOH . E 3 HOH A 21 621 44 HOH HOH . E 3 HOH A 22 622 41 HOH HOH . E 3 HOH A 23 623 17 HOH HOH . E 3 HOH A 24 624 10 HOH HOH . E 3 HOH A 25 625 30 HOH HOH . E 3 HOH A 26 626 40 HOH HOH . E 3 HOH A 27 627 39 HOH HOH . E 3 HOH A 28 628 32 HOH HOH . E 3 HOH A 29 629 56 HOH HOH . E 3 HOH A 30 630 21 HOH HOH . E 3 HOH A 31 631 16 HOH HOH . E 3 HOH A 32 632 53 HOH HOH . F 3 HOH B 1 601 1 HOH HOH . F 3 HOH B 2 602 47 HOH HOH . F 3 HOH B 3 603 2 HOH HOH . F 3 HOH B 4 604 49 HOH HOH . F 3 HOH B 5 605 23 HOH HOH . F 3 HOH B 6 606 19 HOH HOH . F 3 HOH B 7 607 3 HOH HOH . F 3 HOH B 8 608 26 HOH HOH . F 3 HOH B 9 609 5 HOH HOH . F 3 HOH B 10 610 7 HOH HOH . F 3 HOH B 11 611 25 HOH HOH . F 3 HOH B 12 612 27 HOH HOH . F 3 HOH B 13 613 4 HOH HOH . F 3 HOH B 14 614 13 HOH HOH . F 3 HOH B 15 615 20 HOH HOH . F 3 HOH B 16 616 48 HOH HOH . F 3 HOH B 17 617 42 HOH HOH . F 3 HOH B 18 618 24 HOH HOH . F 3 HOH B 19 619 58 HOH HOH . F 3 HOH B 20 620 34 HOH HOH . F 3 HOH B 21 621 37 HOH HOH . F 3 HOH B 22 622 18 HOH HOH . F 3 HOH B 23 623 14 HOH HOH . F 3 HOH B 24 624 35 HOH HOH . F 3 HOH B 25 625 33 HOH HOH . F 3 HOH B 26 626 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 14.04 -5.384 -1.732 1 22.84 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 13.557 -3.303 2.628 1 24.09 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 12.857 0.989 0.497 1 22.69 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 12.724 -1.197 -3.833 1 23.81 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 14.083 -5.175 -0.369 1 27.37 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 14.575 -6.102 0.636 1 27.64 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 14.442 -5.52 1.83 1 23.39 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 13.856 -4.211 1.636 1 24.83 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 14.84 -6.136 3.186 1 26.12 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 15.17 -7.508 0.384 1 24.5 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 14.139 -8.605 0.629 1 23.75 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 14.726 -9.954 0.292 1 33.71 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 15.936 -10.177 0.559 1 35.14 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 13.978 -10.817 -0.238 1 36.09 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 13.338 -1.956 2.44 1 22.88 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 13.179 -0.965 3.484 1 23.28 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 12.981 0.229 2.892 1 24.7 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 13.013 0.016 1.459 1 20.68 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 13.236 -1.306 4.991 1 24.73 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 12.755 1.631 3.518 1 24.28 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 12.725 1.885 4.831 1 23.05 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 12.762 0.783 -0.862 1 27.11 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 12.562 1.809 -1.863 1 23.96 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 12.512 1.226 -3.063 1 23.82 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 12.695 -0.208 -2.87 1 23.19 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 12.41 3.32 -1.583 1 20.5 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 12.306 2.011 -4.382 1 24.09 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 12.093 1.413 -5.558 1 26.28 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 13.109 -2.51 -3.649 1 26.28 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 13.327 -3.49 -4.694 1 27.04 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 13.695 -4.643 -4.123 1 26.39 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 13.715 -4.442 -2.686 1 24.48 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 13.17 -3.239 -6.209 1 23.66 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 14.018 -5.959 -4.871 1 25.12 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 15.48 -6.357 -4.681 1 29.63 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 15.728 -7.745 -5.222 1 28.97 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 14.82 -8.612 -5.128 1 28.63 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 16.847 -7.99 -5.741 1 28.13 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 13.651 -4.033 0.282 1 27.7 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 13.232 -1.324 1.22 1 22.39 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 12.843 -0.434 -1.513 1 26.77 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 13.355 -3.129 -2.436 1 28.73 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 13.343 -2.218 -0.6 1 17.41 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #