data_8HHA
#
_model_server_result.job_id            scGCkdG0RSGnEGN4uGkX9g 
_model_server_result.datetime_utc      '2025-07-30 12:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8hha 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":603}' 
#
_entry.id    8HHA 
#
_exptl.entry_id    8HHA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 175 A THR 176 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc2 H O1G ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc3 J O2G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc4 C OG1 THR 175 C THR 176 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 L MG MG . C MG 601 1_555 M O1G ATP . C ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc6 L MG MG . C MG 601 1_555 M O2B ATP . C ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc7 L MG MG . C MG 601 1_555 M O3B ATP . C ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc8 D OG1 THR 176 D THR 165 1_555 N MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc9 N MG MG . D MG 601 1_555 O O3 PO4 . D PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc10 N MG MG . D MG 601 1_555 O O4 PO4 . D PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc11 N MG MG . D MG 601 1_555 P O3B ADP . D ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc12 F OG1 THR 176 F THR 165 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc13 F OE1 GLU 201 F GLU 190 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc14 F OE2 GLU 205 F GLU 194 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc15 Q MG MG . F MG 601 1_555 R O3G ATP . F ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8HHA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 4 ATP A 1 600 600 ATP ATP . 
I 5 MG A 1 601 601 MG MG . 
J 4 ATP B 1 600 600 ATP ATP . 
K 5 MG B 1 601 601 MG MG . 
L 5 MG C 1 601 601 MG MG . 
M 4 ATP C 1 602 600 ATP ATP . 
N 5 MG D 1 601 601 MG MG . 
O 6 PO4 D 1 602 603 PO4 PO4 . 
P 7 ADP D 1 603 602 ADP ADP . 
Q 5 MG F 1 601 601 MG MG . 
R 4 ATP F 1 602 602 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . P 7 129.938 173.788 189.779 1 65.69 ? PB ADP 603 D 1 
HETATM 2 O O1B ADP . . . P 7 129.662 172.635 188.849 1 65.69 ? O1B ADP 603 D 1 
HETATM 3 O O2B ADP . . . P 7 131.351 173.849 190.298 1 65.69 ? O2B ADP 603 D 1 
HETATM 4 O O3B ADP . . . P 7 128.868 174.004 190.818 1 65.69 ? O3B ADP 603 D 1 
HETATM 5 P PA ADP . . . P 7 128.555 176.036 188.825 1 65.69 ? PA ADP 603 D 1 
HETATM 6 O O1A ADP . . . P 7 127.415 175.309 188.16 1 65.69 ? O1A ADP 603 D 1 
HETATM 7 O O2A ADP . . . P 7 128.358 176.638 190.193 1 65.69 ? O2A ADP 603 D 1 
HETATM 8 O O3A ADP . . . P 7 129.831 175.06 188.807 1 65.69 ? O3A ADP 603 D 1 
HETATM 9 O O5' ADP . . . P 7 129.038 177.196 187.827 1 65.69 ? O5' ADP 603 D 1 
HETATM 10 C C5' ADP . . . P 7 129.091 176.916 186.434 1 65.69 ? C5' ADP 603 D 1 
HETATM 11 C C4' ADP . . . P 7 128.976 178.203 185.637 1 65.69 ? C4' ADP 603 D 1 
HETATM 12 O O4' ADP . . . P 7 128.77 177.859 184.268 1 65.69 ? O4' ADP 603 D 1 
HETATM 13 C C3' ADP . . . P 7 127.781 179.012 186.102 1 65.69 ? C3' ADP 603 D 1 
HETATM 14 O O3' ADP . . . P 7 128.208 180.293 186.568 1 65.69 ? O3' ADP 603 D 1 
HETATM 15 C C2' ADP . . . P 7 126.892 179.179 184.891 1 65.69 ? C2' ADP 603 D 1 
HETATM 16 O O2' ADP . . . P 7 126.771 180.566 184.571 1 65.69 ? O2' ADP 603 D 1 
HETATM 17 C C1' ADP . . . P 7 127.574 178.442 183.755 1 65.69 ? C1' ADP 603 D 1 
HETATM 18 N N9 ADP . . . P 7 126.666 177.362 183.31 1 65.69 ? N9 ADP 603 D 1 
HETATM 19 C C8 ADP . . . P 7 126.656 176.1 183.775 1 65.69 ? C8 ADP 603 D 1 
HETATM 20 N N7 ADP . . . P 7 125.695 175.363 183.163 1 65.69 ? N7 ADP 603 D 1 
HETATM 21 C C5 ADP . . . P 7 125.07 176.167 182.286 1 65.69 ? C5 ADP 603 D 1 
HETATM 22 C C6 ADP . . . P 7 123.963 176.032 181.312 1 65.69 ? C6 ADP 603 D 1 
HETATM 23 N N6 ADP . . . P 7 123.312 174.857 181.151 1 65.69 ? N6 ADP 603 D 1 
HETATM 24 N N1 ADP . . . P 7 123.622 177.121 180.592 1 65.69 ? N1 ADP 603 D 1 
HETATM 25 C C2 ADP . . . P 7 124.258 178.296 180.741 1 65.69 ? C2 ADP 603 D 1 
HETATM 26 N N3 ADP . . . P 7 125.27 178.491 181.603 1 65.69 ? N3 ADP 603 D 1 
HETATM 27 C C4 ADP . . . P 7 125.713 177.483 182.388 1 65.69 ? C4 ADP 603 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#