data_8HHO # _model_server_result.job_id YBoFlTfDA48TVGNh4Rrv1w _model_server_result.datetime_utc '2025-10-01 16:03:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8HHO # _exptl.entry_id 8HHO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag ? _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 8HHO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NAP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id NAP _pdbx_nonpoly_scheme.auth_mon_id NAP _pdbx_nonpoly_scheme.pdb_ins_code ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 155.072 144.876 150.261 1 83.56 0 PA NAP 501 A 1 HETATM 2 O O1A NAP . . . B 2 155.008 144.121 151.567 1 83.56 -1 O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . B 2 155.254 144.123 148.965 1 83.56 0 O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . B 2 156.242 145.977 150.373 1 83.56 0 O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . B 2 156.009 147.324 149.969 1 83.56 0 C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . B 2 157.116 147.767 149.02 1 83.56 0 C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . B 2 158.368 147.773 149.711 1 83.56 0 O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . B 2 157.238 146.818 147.838 1 83.56 0 C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . B 2 157.035 147.542 146.618 1 83.56 0 O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . B 2 158.628 146.203 147.933 1 83.56 0 C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . B 2 159.401 146.392 146.748 1 83.56 0 O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . B 2 159.312 146.884 149.108 1 83.56 0 C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . B 2 159.742 145.866 150.099 1 83.56 0 N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . B 2 160.037 144.58 149.831 1 83.56 0 C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . B 2 160.397 143.914 150.959 1 83.56 0 N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . B 2 160.333 144.788 151.981 1 83.56 0 C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . B 2 160.583 144.745 153.441 1 83.56 0 C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . B 2 160.983 143.603 154.05 1 83.56 0 N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . B 2 160.397 145.884 154.145 1 83.56 0 N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . B 2 160 147.025 153.552 1 83.56 0 C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . B 2 159.756 147.136 152.234 1 83.56 0 N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . B 2 159.901 146.072 151.408 1 83.56 0 C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . B 2 153.747 145.782 150.137 1 83.56 0 O3 NAP 501 A 1 HETATM 24 P PN NAP . . . B 2 152.693 145.532 148.945 1 83.56 0 PN NAP 501 A 1 HETATM 25 O O1N NAP . . . B 2 153.464 145.389 147.655 1 83.56 -1 O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . B 2 151.741 144.444 149.379 1 83.56 0 O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . B 2 151.88 146.921 148.894 1 83.56 0 O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . B 2 150.557 146.966 148.364 1 83.56 0 C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . B 2 149.559 146.63 149.465 1 83.56 0 C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . B 2 148.383 147.431 149.319 1 83.56 0 O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . B 2 149.136 145.17 149.403 1 83.56 0 C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . B 2 149.661 144.464 150.536 1 83.56 0 O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . B 2 147.614 145.173 149.362 1 83.56 0 C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . B 2 147.028 144.499 150.484 1 83.56 0 O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . B 2 147.195 146.636 149.368 1 83.56 0 C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . B 2 146.356 146.917 148.202 1 83.56 0 N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . B 2 145.078 146.517 148.2 1 83.56 0 C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . B 2 144.256 146.769 147.107 1 83.56 0 C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . B 2 142.827 146.314 147.119 1 83.56 0 C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . B 2 142.417 145.657 148.062 1 83.56 0 O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . B 2 142.039 146.64 146.096 1 83.56 0 N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . B 2 144.768 147.443 146.008 1 83.56 0 C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . B 2 146.096 147.848 146.034 1 83.56 0 C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . B 2 146.873 147.569 147.153 1 83.56 0 C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . B 2 160.681 145.462 146.453 1 83.56 0 P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . B 2 160.717 145.36 144.947 1 83.56 0 O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . B 2 160.36 144.166 147.157 1 83.56 -1 O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . B 2 161.835 146.229 147.053 1 83.56 0 O3X NAP 501 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 192 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #