data_8HHQ # _model_server_result.job_id DUQ8aiKNfX01u4xaa4vhfw _model_server_result.datetime_utc '2024-11-25 02:13:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8HHQ # _exptl.entry_id 8HHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.051 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.22 _cell.angle_gamma 90 _cell.entry_id 8HHQ _cell.length_a 92.142 _cell.length_b 59.802 _cell.length_c 117.956 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.071 29.901 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 285 1_555 C CA GOA . A GOA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale2 B SG CYS 84 B CYS 285 1_555 D CA GOA . B GOA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? # _chem_comp.formula 'C2 H4 O3' _chem_comp.formula_weight 76.051 _chem_comp.id GOA _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA GOA sing 129 n n C O GOA doub 130 n n C OXT GOA sing 131 n n CA O2 GOA sing 132 n n CA H22 GOA sing 133 n n CA H21 GOA sing 134 n n OXT HXT GOA sing 135 n n O2 H20 GOA sing 136 n n # _atom_sites.entry_id 8HHQ _atom_sites.fract_transf_matrix[1][1] 0.010853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00255 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOA A 1 501 1 GOA Iod . D 2 GOA B 1 501 2 GOA Iod . E 3 HOH A 1 601 1 HOH HOH . E 3 HOH A 2 602 285 HOH HOH . E 3 HOH A 3 603 287 HOH HOH . E 3 HOH A 4 604 60 HOH HOH . E 3 HOH A 5 605 254 HOH HOH . E 3 HOH A 6 606 260 HOH HOH . E 3 HOH A 7 607 270 HOH HOH . E 3 HOH A 8 608 283 HOH HOH . E 3 HOH A 9 609 269 HOH HOH . E 3 HOH A 10 610 53 HOH HOH . E 3 HOH A 11 611 286 HOH HOH . E 3 HOH A 12 612 282 HOH HOH . E 3 HOH A 13 613 255 HOH HOH . E 3 HOH A 14 614 290 HOH HOH . E 3 HOH A 15 615 272 HOH HOH . E 3 HOH A 16 616 86 HOH HOH . E 3 HOH A 17 617 258 HOH HOH . E 3 HOH A 18 618 61 HOH HOH . E 3 HOH A 19 619 4 HOH HOH . E 3 HOH A 20 620 25 HOH HOH . E 3 HOH A 21 621 158 HOH HOH . E 3 HOH A 22 622 147 HOH HOH . E 3 HOH A 23 623 143 HOH HOH . E 3 HOH A 24 624 161 HOH HOH . E 3 HOH A 25 625 271 HOH HOH . E 3 HOH A 26 626 289 HOH HOH . E 3 HOH A 27 627 19 HOH HOH . E 3 HOH A 28 628 262 HOH HOH . E 3 HOH A 29 629 288 HOH HOH . E 3 HOH A 30 630 173 HOH HOH . E 3 HOH A 31 631 268 HOH HOH . E 3 HOH A 32 632 222 HOH HOH . E 3 HOH A 33 633 28 HOH HOH . E 3 HOH A 34 634 108 HOH HOH . E 3 HOH A 35 635 276 HOH HOH . E 3 HOH A 36 636 261 HOH HOH . E 3 HOH A 37 637 15 HOH HOH . E 3 HOH A 38 638 129 HOH HOH . E 3 HOH A 39 639 284 HOH HOH . E 3 HOH A 40 640 277 HOH HOH . E 3 HOH A 41 641 109 HOH HOH . E 3 HOH A 42 642 63 HOH HOH . E 3 HOH A 43 643 128 HOH HOH . E 3 HOH A 44 644 79 HOH HOH . E 3 HOH A 45 645 126 HOH HOH . E 3 HOH A 46 646 50 HOH HOH . E 3 HOH A 47 647 18 HOH HOH . E 3 HOH A 48 648 21 HOH HOH . E 3 HOH A 49 649 42 HOH HOH . E 3 HOH A 50 650 176 HOH HOH . E 3 HOH A 51 651 141 HOH HOH . E 3 HOH A 52 652 115 HOH HOH . E 3 HOH A 53 653 206 HOH HOH . E 3 HOH A 54 654 54 HOH HOH . E 3 HOH A 55 655 67 HOH HOH . E 3 HOH A 56 656 55 HOH HOH . E 3 HOH A 57 657 103 HOH HOH . E 3 HOH A 58 658 165 HOH HOH . E 3 HOH A 59 659 112 HOH HOH . E 3 HOH A 60 660 242 HOH HOH . E 3 HOH A 61 661 246 HOH HOH . E 3 HOH A 62 662 248 HOH HOH . E 3 HOH A 63 663 172 HOH HOH . E 3 HOH A 64 664 240 HOH HOH . E 3 HOH A 65 665 239 HOH HOH . E 3 HOH A 66 666 252 HOH HOH . E 3 HOH A 67 667 280 HOH HOH . E 3 HOH A 68 668 245 HOH HOH . F 3 HOH B 1 601 292 HOH HOH . F 3 HOH B 2 602 9 HOH HOH . F 3 HOH B 3 603 256 HOH HOH . F 3 HOH B 4 604 263 HOH HOH . F 3 HOH B 5 605 2 HOH HOH . F 3 HOH B 6 606 77 HOH HOH . F 3 HOH B 7 607 46 HOH HOH . F 3 HOH B 8 608 279 HOH HOH . F 3 HOH B 9 609 257 HOH HOH . F 3 HOH B 10 610 295 HOH HOH . F 3 HOH B 11 611 266 HOH HOH . F 3 HOH B 12 612 41 HOH HOH . F 3 HOH B 13 613 195 HOH HOH . F 3 HOH B 14 614 298 HOH HOH . F 3 HOH B 15 615 125 HOH HOH . F 3 HOH B 16 616 297 HOH HOH . F 3 HOH B 17 617 296 HOH HOH . F 3 HOH B 18 618 294 HOH HOH . F 3 HOH B 19 619 259 HOH HOH . F 3 HOH B 20 620 205 HOH HOH . F 3 HOH B 21 621 281 HOH HOH . F 3 HOH B 22 622 227 HOH HOH . F 3 HOH B 23 623 88 HOH HOH . F 3 HOH B 24 624 253 HOH HOH . F 3 HOH B 25 625 274 HOH HOH . F 3 HOH B 26 626 123 HOH HOH . F 3 HOH B 27 627 265 HOH HOH . F 3 HOH B 28 628 291 HOH HOH . F 3 HOH B 29 629 166 HOH HOH . F 3 HOH B 30 630 275 HOH HOH . F 3 HOH B 31 631 224 HOH HOH . F 3 HOH B 32 632 187 HOH HOH . F 3 HOH B 33 633 27 HOH HOH . F 3 HOH B 34 634 209 HOH HOH . F 3 HOH B 35 635 233 HOH HOH . F 3 HOH B 36 636 293 HOH HOH . F 3 HOH B 37 637 121 HOH HOH . F 3 HOH B 38 638 105 HOH HOH . F 3 HOH B 39 639 49 HOH HOH . F 3 HOH B 40 640 180 HOH HOH . F 3 HOH B 41 641 57 HOH HOH . F 3 HOH B 42 642 264 HOH HOH . F 3 HOH B 43 643 120 HOH HOH . F 3 HOH B 44 644 24 HOH HOH . F 3 HOH B 45 645 35 HOH HOH . F 3 HOH B 46 646 104 HOH HOH . F 3 HOH B 47 647 44 HOH HOH . F 3 HOH B 48 648 167 HOH HOH . F 3 HOH B 49 649 3 HOH HOH . F 3 HOH B 50 650 148 HOH HOH . F 3 HOH B 51 651 162 HOH HOH . F 3 HOH B 52 652 185 HOH HOH . F 3 HOH B 53 653 16 HOH HOH . F 3 HOH B 54 654 31 HOH HOH . F 3 HOH B 55 655 151 HOH HOH . F 3 HOH B 56 656 174 HOH HOH . F 3 HOH B 57 657 249 HOH HOH . F 3 HOH B 58 658 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GOA . . . D 2 35.457 -4.377 36.362 1 37.11 ? C GOA 501 B 1 HETATM 2 C CA GOA . . . D 2 36.774 -4.93 36.882 1 34.47 ? CA GOA 501 B 1 HETATM 3 O O GOA . . . D 2 35.359 -3.726 35.268 1 39.42 ? O GOA 501 B 1 HETATM 4 O OXT GOA . . . D 2 34.406 -4.593 37.012 1 34.08 ? OXT GOA 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #