data_8HHT # _model_server_result.job_id na8VIfPFAEXqXwGeRCIHZg _model_server_result.datetime_utc '2024-11-21 08:33:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8HHT # _exptl.entry_id 8HHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.475 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(1,3-thiazol-2-ylmethylamino)butan-2-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.09 _cell.angle_gamma 90 _cell.entry_id 8HHT _cell.length_a 114.615 _cell.length_b 54.161 _cell.length_c 44.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 9.297392 0 -43.405421 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C12 _struct_conn.ptnr2_label_comp_id LV0 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LV0 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.769 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H21 N3 O3 S' _chem_comp.formula_weight 395.475 _chem_comp.id LV0 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(1,3-thiazol-2-ylmethylamino)butan-2-yl]benzamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N18 C19 LV0 sing 203 n y N18 C17 LV0 doub 204 n y C16 C17 LV0 sing 205 n n C16 N15 LV0 sing 206 n n C19 C20 LV0 doub 207 n y C17 S21 LV0 sing 208 n y N15 C14 LV0 sing 209 n n O22 C14 LV0 doub 210 n n C20 S21 LV0 sing 211 n y C14 C12 LV0 sing 212 n n C12 O13 LV0 sing 213 n n C12 C04 LV0 sing 214 n n C04 C05 LV0 sing 215 n n C04 N03 LV0 sing 216 n n C05 C06 LV0 sing 217 n n O01 C02 LV0 doub 218 n n N03 C02 LV0 sing 219 n n C02 C23 LV0 sing 220 n n C11 C06 LV0 doub 221 n y C11 C10 LV0 sing 222 n y C28 C23 LV0 doub 223 n y C28 C27 LV0 sing 224 n y C06 C07 LV0 sing 225 n y C23 C24 LV0 sing 226 n y C27 C26 LV0 doub 227 n y C10 C09 LV0 doub 228 n y C07 C08 LV0 doub 229 n y C24 C25 LV0 doub 230 n y C26 C25 LV0 sing 231 n y C09 C08 LV0 sing 232 n y C24 H1 LV0 sing 233 n n C25 H2 LV0 sing 234 n n C26 H3 LV0 sing 235 n n C27 H4 LV0 sing 236 n n C28 H5 LV0 sing 237 n n C10 H6 LV0 sing 238 n n C04 H7 LV0 sing 239 n n C05 H8 LV0 sing 240 n n C05 H9 LV0 sing 241 n n C07 H10 LV0 sing 242 n n C08 H11 LV0 sing 243 n n C09 H12 LV0 sing 244 n n C11 H13 LV0 sing 245 n n C12 H14 LV0 sing 246 n n N03 H15 LV0 sing 247 n n O13 H16 LV0 sing 248 n n C20 H17 LV0 sing 249 n n C16 H18 LV0 sing 250 n n C16 H19 LV0 sing 251 n n C19 H20 LV0 sing 252 n n N15 H21 LV0 sing 253 n n # _atom_sites.entry_id 8HHT _atom_sites.fract_transf_matrix[1][1] 0.008725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LV0 A 1 401 401 LV0 LIG . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 HOH A 1 501 106 HOH HOH . E 4 HOH A 2 502 47 HOH HOH . E 4 HOH A 3 503 161 HOH HOH . E 4 HOH A 4 504 23 HOH HOH . E 4 HOH A 5 505 35 HOH HOH . E 4 HOH A 6 506 241 HOH HOH . E 4 HOH A 7 507 163 HOH HOH . E 4 HOH A 8 508 109 HOH HOH . E 4 HOH A 9 509 78 HOH HOH . E 4 HOH A 10 510 14 HOH HOH . E 4 HOH A 11 511 63 HOH HOH . E 4 HOH A 12 512 54 HOH HOH . E 4 HOH A 13 513 193 HOH HOH . E 4 HOH A 14 514 134 HOH HOH . E 4 HOH A 15 515 39 HOH HOH . E 4 HOH A 16 516 117 HOH HOH . E 4 HOH A 17 517 206 HOH HOH . E 4 HOH A 18 518 42 HOH HOH . E 4 HOH A 19 519 20 HOH HOH . E 4 HOH A 20 520 22 HOH HOH . E 4 HOH A 21 521 129 HOH HOH . E 4 HOH A 22 522 98 HOH HOH . E 4 HOH A 23 523 147 HOH HOH . E 4 HOH A 24 524 94 HOH HOH . E 4 HOH A 25 525 96 HOH HOH . E 4 HOH A 26 526 15 HOH HOH . E 4 HOH A 27 527 259 HOH HOH . E 4 HOH A 28 528 105 HOH HOH . E 4 HOH A 29 529 37 HOH HOH . E 4 HOH A 30 530 60 HOH HOH . E 4 HOH A 31 531 116 HOH HOH . E 4 HOH A 32 532 126 HOH HOH . E 4 HOH A 33 533 2 HOH HOH . E 4 HOH A 34 534 77 HOH HOH . E 4 HOH A 35 535 13 HOH HOH . E 4 HOH A 36 536 118 HOH HOH . E 4 HOH A 37 537 69 HOH HOH . E 4 HOH A 38 538 122 HOH HOH . E 4 HOH A 39 539 40 HOH HOH . E 4 HOH A 40 540 115 HOH HOH . E 4 HOH A 41 541 8 HOH HOH . E 4 HOH A 42 542 108 HOH HOH . E 4 HOH A 43 543 11 HOH HOH . E 4 HOH A 44 544 53 HOH HOH . E 4 HOH A 45 545 189 HOH HOH . E 4 HOH A 46 546 29 HOH HOH . E 4 HOH A 47 547 36 HOH HOH . E 4 HOH A 48 548 6 HOH HOH . E 4 HOH A 49 549 64 HOH HOH . E 4 HOH A 50 550 32 HOH HOH . E 4 HOH A 51 551 5 HOH HOH . E 4 HOH A 52 552 125 HOH HOH . E 4 HOH A 53 553 3 HOH HOH . E 4 HOH A 54 554 255 HOH HOH . E 4 HOH A 55 555 111 HOH HOH . E 4 HOH A 56 556 44 HOH HOH . E 4 HOH A 57 557 34 HOH HOH . E 4 HOH A 58 558 33 HOH HOH . E 4 HOH A 59 559 9 HOH HOH . E 4 HOH A 60 560 233 HOH HOH . E 4 HOH A 61 561 72 HOH HOH . E 4 HOH A 62 562 222 HOH HOH . E 4 HOH A 63 563 27 HOH HOH . E 4 HOH A 64 564 21 HOH HOH . E 4 HOH A 65 565 130 HOH HOH . E 4 HOH A 66 566 178 HOH HOH . E 4 HOH A 67 567 4 HOH HOH . E 4 HOH A 68 568 185 HOH HOH . E 4 HOH A 69 569 92 HOH HOH . E 4 HOH A 70 570 10 HOH HOH . E 4 HOH A 71 571 74 HOH HOH . E 4 HOH A 72 572 26 HOH HOH . E 4 HOH A 73 573 80 HOH HOH . E 4 HOH A 74 574 151 HOH HOH . E 4 HOH A 75 575 107 HOH HOH . E 4 HOH A 76 576 7 HOH HOH . E 4 HOH A 77 577 55 HOH HOH . E 4 HOH A 78 578 56 HOH HOH . E 4 HOH A 79 579 68 HOH HOH . E 4 HOH A 80 580 204 HOH HOH . E 4 HOH A 81 581 170 HOH HOH . E 4 HOH A 82 582 240 HOH HOH . E 4 HOH A 83 583 16 HOH HOH . E 4 HOH A 84 584 95 HOH HOH . E 4 HOH A 85 585 1 HOH HOH . E 4 HOH A 86 586 121 HOH HOH . E 4 HOH A 87 587 86 HOH HOH . E 4 HOH A 88 588 88 HOH HOH . E 4 HOH A 89 589 24 HOH HOH . E 4 HOH A 90 590 218 HOH HOH . E 4 HOH A 91 591 101 HOH HOH . E 4 HOH A 92 592 205 HOH HOH . E 4 HOH A 93 593 164 HOH HOH . E 4 HOH A 94 594 103 HOH HOH . E 4 HOH A 95 595 17 HOH HOH . E 4 HOH A 96 596 57 HOH HOH . E 4 HOH A 97 597 154 HOH HOH . E 4 HOH A 98 598 59 HOH HOH . E 4 HOH A 99 599 66 HOH HOH . E 4 HOH A 100 600 236 HOH HOH . E 4 HOH A 101 601 128 HOH HOH . E 4 HOH A 102 602 149 HOH HOH . E 4 HOH A 103 603 25 HOH HOH . E 4 HOH A 104 604 51 HOH HOH . E 4 HOH A 105 605 62 HOH HOH . E 4 HOH A 106 606 43 HOH HOH . E 4 HOH A 107 607 211 HOH HOH . E 4 HOH A 108 608 99 HOH HOH . E 4 HOH A 109 609 93 HOH HOH . E 4 HOH A 110 610 48 HOH HOH . E 4 HOH A 111 611 41 HOH HOH . E 4 HOH A 112 612 12 HOH HOH . E 4 HOH A 113 613 84 HOH HOH . E 4 HOH A 114 614 49 HOH HOH . E 4 HOH A 115 615 19 HOH HOH . E 4 HOH A 116 616 235 HOH HOH . E 4 HOH A 117 617 167 HOH HOH . E 4 HOH A 118 618 196 HOH HOH . E 4 HOH A 119 619 73 HOH HOH . E 4 HOH A 120 620 217 HOH HOH . E 4 HOH A 121 621 18 HOH HOH . E 4 HOH A 122 622 58 HOH HOH . E 4 HOH A 123 623 190 HOH HOH . E 4 HOH A 124 624 38 HOH HOH . E 4 HOH A 125 625 30 HOH HOH . E 4 HOH A 126 626 176 HOH HOH . E 4 HOH A 127 627 46 HOH HOH . E 4 HOH A 128 628 153 HOH HOH . E 4 HOH A 129 629 104 HOH HOH . E 4 HOH A 130 630 232 HOH HOH . E 4 HOH A 131 631 216 HOH HOH . E 4 HOH A 132 632 65 HOH HOH . E 4 HOH A 133 633 166 HOH HOH . E 4 HOH A 134 634 179 HOH HOH . E 4 HOH A 135 635 102 HOH HOH . E 4 HOH A 136 636 244 HOH HOH . E 4 HOH A 137 637 83 HOH HOH . E 4 HOH A 138 638 144 HOH HOH . E 4 HOH A 139 639 31 HOH HOH . E 4 HOH A 140 640 76 HOH HOH . E 4 HOH A 141 641 188 HOH HOH . E 4 HOH A 142 642 85 HOH HOH . E 4 HOH A 143 643 209 HOH HOH . E 4 HOH A 144 644 160 HOH HOH . E 4 HOH A 145 645 207 HOH HOH . E 4 HOH A 146 646 110 HOH HOH . E 4 HOH A 147 647 219 HOH HOH . E 4 HOH A 148 648 67 HOH HOH . E 4 HOH A 149 649 201 HOH HOH . E 4 HOH A 150 650 89 HOH HOH . E 4 HOH A 151 651 123 HOH HOH . E 4 HOH A 152 652 183 HOH HOH . E 4 HOH A 153 653 150 HOH HOH . E 4 HOH A 154 654 192 HOH HOH . E 4 HOH A 155 655 137 HOH HOH . E 4 HOH A 156 656 250 HOH HOH . E 4 HOH A 157 657 254 HOH HOH . E 4 HOH A 158 658 223 HOH HOH . E 4 HOH A 159 659 210 HOH HOH . E 4 HOH A 160 660 113 HOH HOH . E 4 HOH A 161 661 133 HOH HOH . E 4 HOH A 162 662 148 HOH HOH . E 4 HOH A 163 663 199 HOH HOH . E 4 HOH A 164 664 175 HOH HOH . E 4 HOH A 165 665 120 HOH HOH . E 4 HOH A 166 666 228 HOH HOH . E 4 HOH A 167 667 213 HOH HOH . E 4 HOH A 168 668 87 HOH HOH . E 4 HOH A 169 669 202 HOH HOH . E 4 HOH A 170 670 52 HOH HOH . E 4 HOH A 171 671 158 HOH HOH . E 4 HOH A 172 672 75 HOH HOH . E 4 HOH A 173 673 180 HOH HOH . E 4 HOH A 174 674 162 HOH HOH . E 4 HOH A 175 675 131 HOH HOH . E 4 HOH A 176 676 168 HOH HOH . E 4 HOH A 177 677 146 HOH HOH . E 4 HOH A 178 678 257 HOH HOH . E 4 HOH A 179 679 70 HOH HOH . E 4 HOH A 180 680 81 HOH HOH . E 4 HOH A 181 681 186 HOH HOH . E 4 HOH A 182 682 152 HOH HOH . E 4 HOH A 183 683 212 HOH HOH . E 4 HOH A 184 684 258 HOH HOH . E 4 HOH A 185 685 127 HOH HOH . E 4 HOH A 186 686 260 HOH HOH . E 4 HOH A 187 687 136 HOH HOH . E 4 HOH A 188 688 224 HOH HOH . E 4 HOH A 189 689 171 HOH HOH . E 4 HOH A 190 690 182 HOH HOH . E 4 HOH A 191 691 169 HOH HOH . E 4 HOH A 192 692 203 HOH HOH . E 4 HOH A 193 693 238 HOH HOH . E 4 HOH A 194 694 234 HOH HOH . E 4 HOH A 195 695 97 HOH HOH . E 4 HOH A 196 696 165 HOH HOH . E 4 HOH A 197 697 159 HOH HOH . E 4 HOH A 198 698 50 HOH HOH . E 4 HOH A 199 699 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 LV0 . . . B 2 10.78 -29.791 1.275 1 47.38 ? C02 LV0 401 A 1 HETATM 2 O O01 LV0 . . . B 2 9.785 -30.307 0.866 1 42.83 ? O01 LV0 401 A 1 HETATM 3 C C23 LV0 . . . B 2 10.758 -28.548 2.192 1 49.48 ? C23 LV0 401 A 1 HETATM 4 C C24 LV0 . . . B 2 10.589 -28.673 3.56 1 52.33 ? C24 LV0 401 A 1 HETATM 5 C C25 LV0 . . . B 2 10.582 -27.542 4.374 1 56.28 ? C25 LV0 401 A 1 HETATM 6 C C26 LV0 . . . B 2 10.744 -26.27 3.842 1 48.09 ? C26 LV0 401 A 1 HETATM 7 C C27 LV0 . . . B 2 10.928 -26.141 2.47 1 55.25 ? C27 LV0 401 A 1 HETATM 8 C C28 LV0 . . . B 2 10.941 -27.276 1.658 1 54.37 ? C28 LV0 401 A 1 HETATM 9 C C04 LV0 . . . B 2 12.029 -31.518 0 1 41.54 ? C04 LV0 401 A 1 HETATM 10 C C12 LV0 . . . B 2 12.871 -31.224 -1.243 1 42.31 ? C12 LV0 401 A 1 HETATM 11 N N03 LV0 . . . B 2 12.049 -30.36 0.877 1 41.24 ? N03 LV0 401 A 1 HETATM 12 O O13 LV0 . . . B 2 14.142 -30.726 -0.89 1 34.22 ? O13 LV0 401 A 1 HETATM 13 C C14 LV0 . . . B 2 12.202 -30.198 -2.156 1 38.2 ? C14 LV0 401 A 1 HETATM 14 C C05 LV0 . . . B 2 12.616 -32.694 0.758 1 42.11 ? C05 LV0 401 A 1 HETATM 15 C C06 LV0 . . . B 2 11.659 -33.045 1.895 1 50.58 ? C06 LV0 401 A 1 HETATM 16 C C11 LV0 . . . B 2 10.509 -33.782 1.629 1 46.01 ? C11 LV0 401 A 1 HETATM 17 C C10 LV0 . . . B 2 9.632 -34.097 2.656 1 49.56 ? C10 LV0 401 A 1 HETATM 18 C C09 LV0 . . . B 2 9.91 -33.657 3.944 1 51.15 ? C09 LV0 401 A 1 HETATM 19 C C08 LV0 . . . B 2 11.051 -32.911 4.209 1 52.13 ? C08 LV0 401 A 1 HETATM 20 C C07 LV0 . . . B 2 11.929 -32.6 3.183 1 51.91 ? C07 LV0 401 A 1 HETATM 21 O O22 LV0 . . . B 2 11.052 -30.262 -2.409 1 35.34 ? O22 LV0 401 A 1 HETATM 22 C C17 LV0 . . . B 2 11.545 -27.105 -3.245 1 36.27 ? C17 LV0 401 A 1 HETATM 23 C C20 LV0 . . . B 2 9.946 -25.611 -2.162 1 44.39 ? C20 LV0 401 A 1 HETATM 24 C C16 LV0 . . . B 2 12.567 -28.155 -3.642 1 35.81 ? C16 LV0 401 A 1 HETATM 25 C C19 LV0 . . . B 2 10.001 -25.361 -3.558 1 43.05 ? C19 LV0 401 A 1 HETATM 26 N N15 LV0 . . . B 2 13.038 -29.149 -2.705 1 40.57 ? N15 LV0 401 A 1 HETATM 27 N N18 LV0 . . . B 2 10.964 -26.273 -4.184 1 35.05 ? N18 LV0 401 A 1 HETATM 28 S S21 LV0 . . . B 2 10.968 -26.784 -1.764 1 36.59 ? S21 LV0 401 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 1146 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #