data_8HI5 # _model_server_result.job_id q5C-hTpW9C1aodh7sQAM6g _model_server_result.datetime_utc '2024-10-20 00:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hi5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 8HI5 # _exptl.entry_id 8HI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8HI5 _cell.length_a 83.67 _cell.length_b 83.67 _cell.length_c 375.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 8HI5 _atom_sites.fract_transf_matrix[1][1] 0.011952 _atom_sites.fract_transf_matrix[1][2] 0.0069 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FK2 A 1 1301 1302 FK2 MSA . C 3 NAP A 1 1302 1303 NAP NAP . D 4 HOH A 1 1401 74 HOH HOH . D 4 HOH A 2 1402 30 HOH HOH . D 4 HOH A 3 1403 40 HOH HOH . D 4 HOH A 4 1404 31 HOH HOH . D 4 HOH A 5 1405 80 HOH HOH . D 4 HOH A 6 1406 73 HOH HOH . D 4 HOH A 7 1407 5 HOH HOH . D 4 HOH A 8 1408 86 HOH HOH . D 4 HOH A 9 1409 26 HOH HOH . D 4 HOH A 10 1410 17 HOH HOH . D 4 HOH A 11 1411 34 HOH HOH . D 4 HOH A 12 1412 16 HOH HOH . D 4 HOH A 13 1413 29 HOH HOH . D 4 HOH A 14 1414 83 HOH HOH . D 4 HOH A 15 1415 35 HOH HOH . D 4 HOH A 16 1416 8 HOH HOH . D 4 HOH A 17 1417 58 HOH HOH . D 4 HOH A 18 1418 15 HOH HOH . D 4 HOH A 19 1419 6 HOH HOH . D 4 HOH A 20 1420 1 HOH HOH . D 4 HOH A 21 1421 4 HOH HOH . D 4 HOH A 22 1422 49 HOH HOH . D 4 HOH A 23 1423 69 HOH HOH . D 4 HOH A 24 1424 14 HOH HOH . D 4 HOH A 25 1425 41 HOH HOH . D 4 HOH A 26 1426 64 HOH HOH . D 4 HOH A 27 1427 11 HOH HOH . D 4 HOH A 28 1428 22 HOH HOH . D 4 HOH A 29 1429 2 HOH HOH . D 4 HOH A 30 1430 21 HOH HOH . D 4 HOH A 31 1431 54 HOH HOH . D 4 HOH A 32 1432 23 HOH HOH . D 4 HOH A 33 1433 28 HOH HOH . D 4 HOH A 34 1434 59 HOH HOH . D 4 HOH A 35 1435 46 HOH HOH . D 4 HOH A 36 1436 52 HOH HOH . D 4 HOH A 37 1437 75 HOH HOH . D 4 HOH A 38 1438 10 HOH HOH . D 4 HOH A 39 1439 37 HOH HOH . D 4 HOH A 40 1440 20 HOH HOH . D 4 HOH A 41 1441 13 HOH HOH . D 4 HOH A 42 1442 33 HOH HOH . D 4 HOH A 43 1443 65 HOH HOH . D 4 HOH A 44 1444 45 HOH HOH . D 4 HOH A 45 1445 3 HOH HOH . D 4 HOH A 46 1446 53 HOH HOH . D 4 HOH A 47 1447 24 HOH HOH . D 4 HOH A 48 1448 9 HOH HOH . D 4 HOH A 49 1449 84 HOH HOH . D 4 HOH A 50 1450 81 HOH HOH . D 4 HOH A 51 1451 36 HOH HOH . D 4 HOH A 52 1452 76 HOH HOH . D 4 HOH A 53 1453 7 HOH HOH . D 4 HOH A 54 1454 47 HOH HOH . D 4 HOH A 55 1455 66 HOH HOH . D 4 HOH A 56 1456 43 HOH HOH . D 4 HOH A 57 1457 42 HOH HOH . D 4 HOH A 58 1458 27 HOH HOH . D 4 HOH A 59 1459 19 HOH HOH . D 4 HOH A 60 1460 18 HOH HOH . D 4 HOH A 61 1461 25 HOH HOH . D 4 HOH A 62 1462 39 HOH HOH . D 4 HOH A 63 1463 12 HOH HOH . D 4 HOH A 64 1464 32 HOH HOH . D 4 HOH A 65 1465 68 HOH HOH . D 4 HOH A 66 1466 38 HOH HOH . D 4 HOH A 67 1467 61 HOH HOH . D 4 HOH A 68 1468 48 HOH HOH . D 4 HOH A 69 1469 63 HOH HOH . D 4 HOH A 70 1470 85 HOH HOH . D 4 HOH A 71 1471 50 HOH HOH . D 4 HOH A 72 1472 57 HOH HOH . D 4 HOH A 73 1473 78 HOH HOH . D 4 HOH A 74 1474 51 HOH HOH . D 4 HOH A 75 1475 67 HOH HOH . D 4 HOH A 76 1476 70 HOH HOH . D 4 HOH A 77 1477 82 HOH HOH . D 4 HOH A 78 1478 56 HOH HOH . D 4 HOH A 79 1479 44 HOH HOH . D 4 HOH A 80 1480 77 HOH HOH . D 4 HOH A 81 1481 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -11.49 -0.282 22.34 1 20 ? PA NAP 1302 A 1 HETATM 2 O O1A NAP . . . C 3 -11.041 -1.688 22.537 1 20 ? O1A NAP 1302 A 1 HETATM 3 O O2A NAP . . . C 3 -12.49 0.274 23.293 1 20 ? O2A NAP 1302 A 1 HETATM 4 O O5B NAP . . . C 3 -10.217 0.676 22.278 1 20 ? O5B NAP 1302 A 1 HETATM 5 C C5B NAP . . . C 3 -9.801 1.327 23.491 1 20 ? C5B NAP 1302 A 1 HETATM 6 C C4B NAP . . . C 3 -9.013 2.56 23.143 1 20 ? C4B NAP 1302 A 1 HETATM 7 O O4B NAP . . . C 3 -9.902 3.706 23.156 1 20 ? O4B NAP 1302 A 1 HETATM 8 C C3B NAP . . . C 3 -7.918 2.921 24.146 1 20 ? C3B NAP 1302 A 1 HETATM 9 O O3B NAP . . . C 3 -6.934 3.757 23.556 1 20 ? O3B NAP 1302 A 1 HETATM 10 C C2B NAP . . . C 3 -8.759 3.634 25.188 1 20 ? C2B NAP 1302 A 1 HETATM 11 O O2B NAP . . . C 3 -7.93 4.367 26.075 1 20 ? O2B NAP 1302 A 1 HETATM 12 C C1B NAP . . . C 3 -9.591 4.514 24.266 1 20 ? C1B NAP 1302 A 1 HETATM 13 N N9A NAP . . . C 3 -10.831 4.99 24.858 1 20 ? N9A NAP 1302 A 1 HETATM 14 C C8A NAP . . . C 3 -11.783 4.237 25.492 1 20 ? C8A NAP 1302 A 1 HETATM 15 N N7A NAP . . . C 3 -12.795 4.942 25.926 1 20 ? N7A NAP 1302 A 1 HETATM 16 C C5A NAP . . . C 3 -12.492 6.243 25.556 1 20 ? C5A NAP 1302 A 1 HETATM 17 C C6A NAP . . . C 3 -13.173 7.461 25.73 1 20 ? C6A NAP 1302 A 1 HETATM 18 N N6A NAP . . . C 3 -14.342 7.57 26.348 1 20 ? N6A NAP 1302 A 1 HETATM 19 N N1A NAP . . . C 3 -12.591 8.578 25.24 1 20 ? N1A NAP 1302 A 1 HETATM 20 C C2A NAP . . . C 3 -11.414 8.462 24.619 1 20 ? C2A NAP 1302 A 1 HETATM 21 N N3A NAP . . . C 3 -10.683 7.376 24.398 1 20 ? N3A NAP 1302 A 1 HETATM 22 C C4A NAP . . . C 3 -11.283 6.285 24.895 1 20 ? C4A NAP 1302 A 1 HETATM 23 O O3 NAP . . . C 3 -12.04 -0.1 20.85 1 20 ? O3 NAP 1302 A 1 HETATM 24 P PN NAP . . . C 3 -11.813 -0.938 19.508 1 20 ? PN NAP 1302 A 1 HETATM 25 O O1N NAP . . . C 3 -12.383 -2.298 19.71 1 20 ? O1N NAP 1302 A 1 HETATM 26 O O2N NAP . . . C 3 -10.391 -0.815 19.084 1 20 ? O2N NAP 1302 A 1 HETATM 27 O O5D NAP . . . C 3 -12.736 -0.126 18.493 1 20 ? O5D NAP 1302 A 1 HETATM 28 C C5D NAP . . . C 3 -12.357 1.213 18.117 1 20 ? C5D NAP 1302 A 1 HETATM 29 C C4D NAP . . . C 3 -13.389 1.756 17.164 1 20 ? C4D NAP 1302 A 1 HETATM 30 O O4D NAP . . . C 3 -13.693 0.744 16.183 1 20 ? O4D NAP 1302 A 1 HETATM 31 C C3D NAP . . . C 3 -14.73 2.155 17.796 1 20 ? C3D NAP 1302 A 1 HETATM 32 O O3D NAP . . . C 3 -15.22 3.364 17.235 1 20 ? O3D NAP 1302 A 1 HETATM 33 C C2D NAP . . . C 3 -15.622 0.96 17.453 1 20 ? C2D NAP 1302 A 1 HETATM 34 O O2D NAP . . . C 3 -16.999 1.286 17.381 1 20 ? O2D NAP 1302 A 1 HETATM 35 C C1D NAP . . . C 3 -15.094 0.585 16.079 1 20 ? C1D NAP 1302 A 1 HETATM 36 N N1N NAP . . . C 3 -15.398 -0.824 15.713 1 20 ? N1N NAP 1302 A 1 HETATM 37 C C2N NAP . . . C 3 -14.863 -1.852 16.43 1 20 ? C2N NAP 1302 A 1 HETATM 38 C C3N NAP . . . C 3 -15.116 -3.164 16.061 1 20 ? C3N NAP 1302 A 1 HETATM 39 C C7N NAP . . . C 3 -14.636 -4.28 16.95 1 20 ? C7N NAP 1302 A 1 HETATM 40 O O7N NAP . . . C 3 -13.692 -4.085 17.709 1 20 ? O7N NAP 1302 A 1 HETATM 41 N N7N NAP . . . C 3 -15.267 -5.44 16.871 1 20 ? N7N NAP 1302 A 1 HETATM 42 C C4N NAP . . . C 3 -15.805 -3.41 14.885 1 20 ? C4N NAP 1302 A 1 HETATM 43 C C5N NAP . . . C 3 -16.368 -2.363 14.2 1 20 ? C5N NAP 1302 A 1 HETATM 44 C C6N NAP . . . C 3 -16.211 -1.085 14.676 1 20 ? C6N NAP 1302 A 1 HETATM 45 P P2B NAP . . . C 3 -8.58 4.737 27.494 1 20 ? P2B NAP 1302 A 1 HETATM 46 O O1X NAP . . . C 3 -9.586 3.703 27.912 1 20 ? O1X NAP 1302 A 1 HETATM 47 O O2X NAP . . . C 3 -7.401 4.776 28.427 1 20 ? O2X NAP 1302 A 1 HETATM 48 O O3X NAP . . . C 3 -9.198 6.095 27.308 1 20 ? O3X NAP 1302 A 1 HETATM 49 H H51A NAP . . . C 3 -9.183 0.653 24.081 1 20 ? H51A NAP 1302 A 1 HETATM 50 H H52A NAP . . . C 3 -10.668 1.61 24.085 1 20 ? H52A NAP 1302 A 1 HETATM 51 H H4B NAP . . . C 3 -8.59 2.438 22.147 1 20 ? H4B NAP 1302 A 1 HETATM 52 H H3B NAP . . . C 3 -7.462 2.027 24.568 1 20 ? H3B NAP 1302 A 1 HETATM 53 H HO3A NAP . . . C 3 -6.8 4.521 24.139 1 20 ? HO3A NAP 1302 A 1 HETATM 54 H H2B NAP . . . C 3 -9.38 2.918 25.722 1 20 ? H2B NAP 1302 A 1 HETATM 55 H H1B NAP . . . C 3 -8.991 5.365 23.947 1 20 ? H1B NAP 1302 A 1 HETATM 56 H H8A NAP . . . C 3 -11.703 3.166 25.619 1 20 ? H8A NAP 1302 A 1 HETATM 57 H H61A NAP . . . C 3 -14.819 6.734 26.674 1 20 ? H61A NAP 1302 A 1 HETATM 58 H H62A NAP . . . C 3 -14.752 8.488 26.491 1 20 ? H62A NAP 1302 A 1 HETATM 59 H H2A NAP . . . C 3 -10.994 9.387 24.246 1 20 ? H2A NAP 1302 A 1 HETATM 60 H H51N NAP . . . C 3 -11.381 1.202 17.635 1 20 ? H51N NAP 1302 A 1 HETATM 61 H H52N NAP . . . C 3 -12.304 1.846 19.001 1 20 ? H52N NAP 1302 A 1 HETATM 62 H H4D NAP . . . C 3 -12.962 2.618 16.655 1 20 ? H4D NAP 1302 A 1 HETATM 63 H H3D NAP . . . C 3 -14.626 2.249 18.875 1 20 ? H3D NAP 1302 A 1 HETATM 64 H HO3N NAP . . . C 3 -16.007 3.155 16.708 1 20 ? HO3N NAP 1302 A 1 HETATM 65 H H2D NAP . . . C 3 -15.459 0.15 18.162 1 20 ? H2D NAP 1302 A 1 HETATM 66 H HO2N NAP . . . C 3 -17.347 0.966 16.534 1 20 ? HO2N NAP 1302 A 1 HETATM 67 H H1D NAP . . . C 3 -15.488 1.258 15.32 1 20 ? H1D NAP 1302 A 1 HETATM 68 H H2N NAP . . . C 3 -14.246 -1.648 17.294 1 20 ? H2N NAP 1302 A 1 HETATM 69 H H71N NAP . . . C 3 -15.821 -5.775 17.654 1 20 ? H71N NAP 1302 A 1 HETATM 70 H H72N NAP . . . C 3 -15.203 -6 16.025 1 20 ? H72N NAP 1302 A 1 HETATM 71 H H4N NAP . . . C 3 -15.899 -4.419 14.508 1 20 ? H4N NAP 1302 A 1 HETATM 72 H H5N NAP . . . C 3 -16.933 -2.532 13.294 1 20 ? H5N NAP 1302 A 1 HETATM 73 H H6N NAP . . . C 3 -16.74 -0.253 14.232 1 20 ? H6N NAP 1302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #