data_8HI9 # _model_server_result.job_id kSTvJrdjF5d0akbby9ftmg _model_server_result.datetime_utc '2025-01-28 04:13:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8hi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8HI9 # _exptl.entry_id 8HI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 3,7-bis(oxidanyl)-2-[3,4,5-tris(oxidanyl)phenyl]chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.89 _cell.angle_gamma 90 _cell.entry_id 8HI9 _cell.length_a 44.156 _cell.length_b 54.182 _cell.length_c 115.416 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8HI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id LKR _chem_comp.mon_nstd_flag . _chem_comp.name 3,7-bis(oxidanyl)-2-[3,4,5-tris(oxidanyl)phenyl]chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Robinetin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C3 LKR sing 194 n n C3 C2 LKR doub 195 n y C3 C4 LKR sing 196 n y C2 C1 LKR sing 197 n y C4 C5 LKR doub 198 n y C1 C6 LKR doub 199 n y C5 C6 LKR sing 200 n y C5 O1 LKR sing 201 n n C6 C9 LKR sing 202 n n O1 C7 LKR sing 203 n n C9 O2 LKR doub 204 n n C9 C8 LKR sing 205 n n C7 C8 LKR doub 206 n n C7 C10 LKR sing 207 n n C8 O3 LKR sing 208 n n C10 C11 LKR doub 209 n y C10 C15 LKR sing 210 n y C11 C12 LKR sing 211 n y C15 C14 LKR doub 212 n y C12 O7 LKR sing 213 n n C12 C13 LKR doub 214 n y C14 C13 LKR sing 215 n y C14 O6 LKR sing 216 n n C13 O5 LKR sing 217 n n C4 H1 LKR sing 218 n n C15 H2 LKR sing 219 n n C1 H3 LKR sing 220 n n C11 H4 LKR sing 221 n n C2 H5 LKR sing 222 n n O3 H6 LKR sing 223 n n O4 H7 LKR sing 224 n n O5 H8 LKR sing 225 n n O6 H9 LKR sing 226 n n O7 H10 LKR sing 227 n n # _atom_sites.entry_id 8HI9 _atom_sites.fract_transf_matrix[1][1] 0.022647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LKR A 1 401 1 LKR LIG . D 2 LKR B 1 401 2 LKR LIG . E 3 HOH A 1 501 96 HOH HOH . E 3 HOH A 2 502 105 HOH HOH . E 3 HOH A 3 503 13 HOH HOH . E 3 HOH A 4 504 34 HOH HOH . E 3 HOH A 5 505 24 HOH HOH . E 3 HOH A 6 506 2 HOH HOH . E 3 HOH A 7 507 1 HOH HOH . E 3 HOH A 8 508 72 HOH HOH . E 3 HOH A 9 509 19 HOH HOH . E 3 HOH A 10 510 39 HOH HOH . E 3 HOH A 11 511 18 HOH HOH . E 3 HOH A 12 512 59 HOH HOH . E 3 HOH A 13 513 9 HOH HOH . E 3 HOH A 14 514 80 HOH HOH . E 3 HOH A 15 515 28 HOH HOH . E 3 HOH A 16 516 40 HOH HOH . E 3 HOH A 17 517 60 HOH HOH . E 3 HOH A 18 518 27 HOH HOH . E 3 HOH A 19 519 14 HOH HOH . E 3 HOH A 20 520 12 HOH HOH . E 3 HOH A 21 521 4 HOH HOH . E 3 HOH A 22 522 56 HOH HOH . E 3 HOH A 23 523 31 HOH HOH . E 3 HOH A 24 524 91 HOH HOH . E 3 HOH A 25 525 22 HOH HOH . E 3 HOH A 26 526 58 HOH HOH . E 3 HOH A 27 527 46 HOH HOH . E 3 HOH A 28 528 69 HOH HOH . E 3 HOH A 29 529 66 HOH HOH . E 3 HOH A 30 530 61 HOH HOH . E 3 HOH A 31 531 87 HOH HOH . E 3 HOH A 32 532 98 HOH HOH . E 3 HOH A 33 533 90 HOH HOH . E 3 HOH A 34 534 94 HOH HOH . E 3 HOH A 35 535 106 HOH HOH . E 3 HOH A 36 536 29 HOH HOH . E 3 HOH A 37 537 50 HOH HOH . E 3 HOH A 38 538 76 HOH HOH . E 3 HOH A 39 539 21 HOH HOH . E 3 HOH A 40 540 92 HOH HOH . F 3 HOH B 1 501 49 HOH HOH . F 3 HOH B 2 502 33 HOH HOH . F 3 HOH B 3 503 11 HOH HOH . F 3 HOH B 4 504 43 HOH HOH . F 3 HOH B 5 505 6 HOH HOH . F 3 HOH B 6 506 36 HOH HOH . F 3 HOH B 7 507 71 HOH HOH . F 3 HOH B 8 508 15 HOH HOH . F 3 HOH B 9 509 74 HOH HOH . F 3 HOH B 10 510 81 HOH HOH . F 3 HOH B 11 511 10 HOH HOH . F 3 HOH B 12 512 51 HOH HOH . F 3 HOH B 13 513 32 HOH HOH . F 3 HOH B 14 514 73 HOH HOH . F 3 HOH B 15 515 3 HOH HOH . F 3 HOH B 16 516 5 HOH HOH . F 3 HOH B 17 517 93 HOH HOH . F 3 HOH B 18 518 8 HOH HOH . F 3 HOH B 19 519 55 HOH HOH . F 3 HOH B 20 520 67 HOH HOH . F 3 HOH B 21 521 23 HOH HOH . F 3 HOH B 22 522 79 HOH HOH . F 3 HOH B 23 523 25 HOH HOH . F 3 HOH B 24 524 20 HOH HOH . F 3 HOH B 25 525 16 HOH HOH . F 3 HOH B 26 526 103 HOH HOH . F 3 HOH B 27 527 65 HOH HOH . F 3 HOH B 28 528 75 HOH HOH . F 3 HOH B 29 529 100 HOH HOH . F 3 HOH B 30 530 17 HOH HOH . F 3 HOH B 31 531 26 HOH HOH . F 3 HOH B 32 532 7 HOH HOH . F 3 HOH B 33 533 42 HOH HOH . F 3 HOH B 34 534 89 HOH HOH . F 3 HOH B 35 535 47 HOH HOH . F 3 HOH B 36 536 82 HOH HOH . F 3 HOH B 37 537 41 HOH HOH . F 3 HOH B 38 538 38 HOH HOH . F 3 HOH B 39 539 37 HOH HOH . F 3 HOH B 40 540 88 HOH HOH . F 3 HOH B 41 541 45 HOH HOH . F 3 HOH B 42 542 48 HOH HOH . F 3 HOH B 43 543 53 HOH HOH . F 3 HOH B 44 544 35 HOH HOH . F 3 HOH B 45 545 57 HOH HOH . F 3 HOH B 46 546 97 HOH HOH . F 3 HOH B 47 547 64 HOH HOH . F 3 HOH B 48 548 84 HOH HOH . F 3 HOH B 49 549 95 HOH HOH . F 3 HOH B 50 550 52 HOH HOH . F 3 HOH B 51 551 70 HOH HOH . F 3 HOH B 52 552 77 HOH HOH . F 3 HOH B 53 553 68 HOH HOH . F 3 HOH B 54 554 62 HOH HOH . F 3 HOH B 55 555 63 HOH HOH . F 3 HOH B 56 556 30 HOH HOH . F 3 HOH B 57 557 108 HOH HOH . F 3 HOH B 58 558 99 HOH HOH . F 3 HOH B 59 559 86 HOH HOH . F 3 HOH B 60 560 85 HOH HOH . F 3 HOH B 61 561 104 HOH HOH . F 3 HOH B 62 562 101 HOH HOH . F 3 HOH B 63 563 78 HOH HOH . F 3 HOH B 64 564 83 HOH HOH . F 3 HOH B 65 565 107 HOH HOH . F 3 HOH B 66 566 54 HOH HOH . F 3 HOH B 67 567 44 HOH HOH . F 3 HOH B 68 568 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 LKR . . . C 2 -14.951 -8.65 -45.615 1 37.49 ? C4 LKR 401 A 1 HETATM 2 C C5 LKR . . . C 2 -14.469 -9.059 -44.385 1 35.78 ? C5 LKR 401 A 1 HETATM 3 C C6 LKR . . . C 2 -13.968 -10.329 -44.152 1 35.86 ? C6 LKR 401 A 1 HETATM 4 C C7 LKR . . . C 2 -14.061 -8.383 -42.135 1 34.75 ? C7 LKR 401 A 1 HETATM 5 C C8 LKR . . . C 2 -13.569 -9.621 -41.833 1 35.29 ? C8 LKR 401 A 1 HETATM 6 C C10 LKR . . . C 2 -14.211 -7.275 -41.181 1 33.65 ? C10 LKR 401 A 1 HETATM 7 C C13 LKR . . . C 2 -14.518 -5.153 -39.399 1 35.37 ? C13 LKR 401 A 1 HETATM 8 C C15 LKR . . . C 2 -13.163 -6.911 -40.329 1 30.13 ? C15 LKR 401 A 1 HETATM 9 C C1 LKR . . . C 2 -13.962 -11.228 -45.228 1 36.26 ? C1 LKR 401 A 1 HETATM 10 C C11 LKR . . . C 2 -15.405 -6.548 -41.142 1 35.47 ? C11 LKR 401 A 1 HETATM 11 C C12 LKR . . . C 2 -15.561 -5.506 -40.251 1 36.81 ? C12 LKR 401 A 1 HETATM 12 C C14 LKR . . . C 2 -13.32 -5.863 -39.443 1 31.95 ? C14 LKR 401 A 1 HETATM 13 C C2 LKR . . . C 2 -14.424 -10.854 -46.457 1 37.06 ? C2 LKR 401 A 1 HETATM 14 C C3 LKR . . . C 2 -14.924 -9.565 -46.659 1 37.87 ? C3 LKR 401 A 1 HETATM 15 C C9 LKR . . . C 2 -13.483 -10.671 -42.825 1 35.48 ? C9 LKR 401 A 1 HETATM 16 O O1 LKR . . . C 2 -14.527 -8.115 -43.395 1 34.8 ? O1 LKR 401 A 1 HETATM 17 O O2 LKR . . . C 2 -13.02 -11.782 -42.531 1 33.23 ? O2 LKR 401 A 1 HETATM 18 O O3 LKR . . . C 2 -13.124 -9.909 -40.584 1 35.03 ? O3 LKR 401 A 1 HETATM 19 O O4 LKR . . . C 2 -15.382 -9.22 -47.884 1 37.59 ? O4 LKR 401 A 1 HETATM 20 O O5 LKR . . . C 2 -14.672 -4.117 -38.524 1 37.77 ? O5 LKR 401 A 1 HETATM 21 O O6 LKR . . . C 2 -12.322 -5.485 -38.589 1 30.42 ? O6 LKR 401 A 1 HETATM 22 O O7 LKR . . . C 2 -16.726 -4.792 -40.182 1 39.16 ? O7 LKR 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #